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Number of ports: 59
py-xopen Open compressed files transparently
0.2.1 archivers search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-11-29 16:00:40
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/archivers/py-xopen/ && make install clean
To add the package: pkg install py27-xopen

PKGNAME: py27-xopen

distinfo:

TIMESTAMP = 1509552397
SHA256 (xopen-0.2.1.tar.gz) = 9b054f8c1c906ca416412e8b7430bac4e683a2c5ce1a59e7e62d667418165dfe
SIZE (xopen-0.2.1.tar.gz) = 4353

praat Phonetics by Computer
5.4.08_3 audio search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/audio/praat/ && make install clean
To add the package: pkg install praat

PKGNAME: praat

distinfo:

SHA256 (praat-praat-v5.4.08_GH0.tar.gz) = 820f6c6e43a46c565778c2494fef6de3b0c5100e78ae5e2979194619c332e165
SIZE (praat-praat-v5.4.08_GH0.tar.gz) = 6973960

bowtie Ultrafast, memory-efficient short read aligner
1.1.2_4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: ART10
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/bowtie/ && make install clean
To add the package: pkg install bowtie

PKGNAME: bowtie

distinfo:

SHA256 (BenLangmead-bowtie-v1.1.2_GH0.tar.gz) = 717145f12d599e9b3672981f5444fbbdb8e02bfde2a80eba577e28baa4125ba7
SIZE (BenLangmead-bowtie-v1.1.2_GH0.tar.gz) = 7831346

bowtie2 Ultrafast, memory-efficient short read aligner
2.3.3.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-11-30 02:59:16
License: GPLv3+
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/bowtie2/ && make install clean
To add the package: pkg install bowtie2

PKGNAME: bowtie2

distinfo:

TIMESTAMP = 1511991430
SHA256 (BenLangmead-bowtie2-v2.3.3.1_GH0.tar.gz) = 8b9c0b9c595ebcddcac5feaf6acb44b2294d6deb91de107596ecad242a1a58e9
SIZE (BenLangmead-bowtie2-v2.3.3.1_GH0.tar.gz) = 5796279

bwa Burrows-Wheeler sequence aligner
0.7.17 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/bwa/ && make install clean
To add the package: pkg install bwa

PKGNAME: bwa

distinfo:

TIMESTAMP = 1511844744
SHA256 (lh3-bwa-v0.7.17_GH0.tar.gz) = 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd
SIZE (lh3-bwa-v0.7.17_GH0.tar.gz) = 232593

canu Single molecule sequence assembler
1.6_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-18 04:11:03
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/canu/ && make install clean
To add the package: pkg install canu

PKGNAME: canu

distinfo:

TIMESTAMP = 1507077399
SHA256 (marbl-canu-v1.6_GH0.tar.gz) = 470e0ac761d69d1fecab85da810a6474b1e2387d7124290a0e4124d660766498
SIZE (marbl-canu-v1.6_GH0.tar.gz) = 2486338

cd-hit Clustering and comparing protein or nucleotide sequences
4.6.6_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/cd-hit/ && make install clean
To add the package: pkg install cd-hit

PKGNAME: cd-hit

distinfo:

TIMESTAMP = 1482076217
SHA256 (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = a0c89c969ad338f958620083b12bc69fa30fcba8246a7ec0b6243e5b2ba0365d
SIZE (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = 1149112

cdbfasta Fast indexing and retrieval of FASTA records from flat file databases
2010.07.22 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/cdbfasta/ && make install clean
To add the package: pkg install cdbfasta

PKGNAME: cdbfasta

distinfo:

SHA256 (cdbfasta-2010.07.22.tar.gz) = 68767e8b2fb9de5a6d68ee16df73293f65e02f05cf2f747a9dd6b8854766722c
SIZE (cdbfasta-2010.07.22.tar.gz) = 59735

fastool Simple and quick FastQ and FastA tool for file reading and conversion
0.1.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/fastool/ && make install clean
To add the package: pkg install fastool

PKGNAME: fastool

distinfo:

SHA256 (fstrozzi-Fastool-0.1.4_GH0.tar.gz) = f86f02fced9479b77d6d27a442b66e66f0c55d40d5ad2ddd91a752de57024540
SIZE (fstrozzi-Fastool-0.1.4_GH0.tar.gz) = 6346

fastqc Quality control tool for high throughput sequence data
0.11.5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-11-30 22:54:29
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/fastqc/ && make install clean
To add the package: pkg install fastqc

PKGNAME: fastqc

distinfo:

TIMESTAMP = 1509737655
SHA256 (fastqc_v0.11.5.zip) = dd7a5ad80ceed2588cf6d6ffe35e0f161c0d9977ed08355f5e4d9473282cbd66
SIZE (fastqc_v0.11.5.zip) = 10026429

fasttree Approximately-maximum-likelihood phylogenetic trees from alignments
2.1.10 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-12-05 03:03:38
License: GPLv2+
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/fasttree/ && make install clean
To add the package: pkg install FastTree

PKGNAME: FastTree

distinfo:

TIMESTAMP = 1512317739
SHA256 (FastTree-2.1.10.c) = 54cb89fc1728a974a59eae7a7ee6309cdd3cddda9a4c55b700a71219fc6e926d
SIZE (FastTree-2.1.10.c) = 390916

fastx-toolkit CLI tools for Short-Reads FASTA/FASTQ files preprocessing
0.0.14 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: AGPLv3+
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/fastx-toolkit/ && make install clean
To add the package: pkg install fastx_toolkit

PKGNAME: fastx_toolkit

distinfo:

SHA256 (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa
SIZE (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = 259576

gmap Genomic Mapping and Alignment Program for mRNA and EST Sequences
2015.09.21 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GMAP
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/gmap/ && make install clean
To add the package: pkg install gmap

PKGNAME: gmap

distinfo:

SHA256 (gmap-gsnap-2015-09-21.tar.gz) = af78237ee9b90ba4416872b3509536060749c3622bbcaadec10e2dcc01301d9c
SIZE (gmap-gsnap-2015-09-21.tar.gz) = 4168019

jellyfish Fast, memory-efficient counting of k-mers in DNA
2.2.6_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv3+
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/jellyfish/ && make install clean
To add the package: pkg install jellyfish

PKGNAME: jellyfish

distinfo:

TIMESTAMP = 1482069678
SHA256 (gmarcais-Jellyfish-v2.2.6_GH0.tar.gz) = 800bc60aaec273dc04296ee7493e714457f2fe88551f76693e5d9f9a679dd35e
SIZE (gmarcais-Jellyfish-v2.2.6_GH0.tar.gz) = 660858

kallisto Quantify abundances of transcripts from RNA-Seq data
0.43.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-12-02 20:44:28
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/kallisto/ && make install clean
To add the package: pkg install kallisto

PKGNAME: kallisto

distinfo:

TIMESTAMP = 1512166931
SHA256 (pachterlab-kallisto-v0.43.1_GH0.tar.gz) = 2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e
SIZE (pachterlab-kallisto-v0.43.1_GH0.tar.gz) = 1067076

libgtextutils Gordon's text utilities
0.7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: AGPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/libgtextutils/ && make install clean
To add the package: pkg install libgtextutils

PKGNAME: libgtextutils

distinfo:

SHA256 (agordon-libgtextutils-0.7_GH0.tar.gz) = 9eed751dea812ab247486f040754815bd3d0239557d0f91c0152d1b5b10dbc3e
SIZE (agordon-libgtextutils-0.7_GH0.tar.gz) = 32478

ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool
2.5.0_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: PD
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/ncbi-blast+/ && make install clean
To add the package: pkg install ncbi-blast+

PKGNAME: ncbi-blast+

distinfo:

TIMESTAMP = 1480648908
SHA256 (ncbi-blast-2.5.0+-src.tar.gz) = cce122a29d309127a478353856b351914232e78a9546941781ff0a4c18ec9c54
SIZE (ncbi-blast-2.5.0+-src.tar.gz) = 19938544

p5-TrimGalore Wrapper around Cutadapt and FastQC for adapter and quality trimming
0.4.5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-12-09 13:23:32
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/p5-TrimGalore/ && make install clean
To add the package: pkg install p5-TrimGalore

PKGNAME: p5-TrimGalore

distinfo:

TIMESTAMP = 1512570215
SHA256 (FelixKrueger-TrimGalore-0.4.5_GH0.tar.gz) = a6b97e554944ddc6ecd50e78df486521f17225d415aad84e9911163faafe1f3c
SIZE (FelixKrueger-TrimGalore-0.4.5_GH0.tar.gz) = 21983909

p5-transdecoder Identify candidate coding regions within transcript sequences
2.1.0 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/p5-transdecoder/ && make install clean
To add the package: pkg install p5-transdecoder

PKGNAME: p5-transdecoder

distinfo:

SHA256 (transdecoder-TransDecoder-v2.1.0_GH0.tar.gz) = 681a8dd72e482cb322d74d8431ddcda61f25c53ad5453d0e22c02c92b2157b24
SIZE (transdecoder-TransDecoder-v2.1.0_GH0.tar.gz) = 11500688

plink Whole genome association analysis toolset
1.07_7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Broken BROKEN: no public distfiles
Ignore IGNORE: is marked as broken: no public distfiles
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/plink/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: plink

distinfo:

SHA256 (plink-1.07-src.zip) = 4af56348443d0c6a1db64950a071b1fcb49cc74154875a7b43cccb4b6a7f482b
SIZE (plink-1.07-src.zip) = 2257297

plinkseq Toolset for working with human genetic variation data
0.10_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/plinkseq/ && make install clean
To add the package: pkg install plinkseq

PKGNAME: plinkseq

distinfo:

SHA256 (plinkseq-src-0.10.tgz) = e9d4705acf8b22eddba0c48cf502e3bd4236f3b60b010f39f94deecf37e94b58
SIZE (plinkseq-src-0.10.tgz) = 6090698

py-cutadapt Finds and removes adapter sequences, primers, poly-A tails, etc
1.14 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-08 20:18:09
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/py-cutadapt/ && make install clean
To add the package: pkg install py27-cutadapt

PKGNAME: py27-cutadapt

distinfo:

TIMESTAMP = 1509552013
SHA256 (cutadapt-1.14.tar.gz) = f32990a8b2f8b53f8f4c723ada3d256a8e8476febdd296506764cc8e83397d3d
SIZE (cutadapt-1.14.tar.gz) = 283631

py-macs2 Analysis of chromatin immunoprecipitation (ChIP) sequences
2.1.0.p20170505 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-12-05 02:59:01
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/py-macs2/ && make install clean
To add the package: pkg install py27-macs2

PKGNAME: py27-macs2

distinfo:

TIMESTAMP = 1512241922
SHA256 (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = c6e4fb8b69b955134399fcdfc075cea5fbc29fabbc46cc4e9acdedeb1174fcfd
SIZE (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = 159560613

slclust Single-linkage clustering with Jaccard similarity
2010.02.02 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: ART10
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/slclust/ && make install clean
To add the package: pkg install slclust

PKGNAME: slclust

distinfo:

SHA256 (slclust_02022010.tar.gz) = 9e21b65288e7fc35647721380cfedffd68608e164b4240c692c511c18c1620f8
SIZE (slclust_02022010.tar.gz) = 23097

trimmomatic Flexible read trimming tool for Illumina NGS data
0.35 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/trimmomatic/ && make install clean
To add the package: pkg install trimmomatic

PKGNAME: trimmomatic

distinfo:

SHA256 (Trimmomatic-0.35.zip) = 43b993ffa91c039b529db8334bc6aa4b0d601e69c79aaa9a1457ecd1c2c3cc69
SIZE (Trimmomatic-0.35.zip) = 129810

vcftools Tools for working with VCF genomics files
0.1.15 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/vcftools/ && make install clean
To add the package: pkg install vcftools

PKGNAME: vcftools

distinfo:

TIMESTAMP = 1502305250
SHA256 (vcftools-vcftools-v0.1.15_GH0.tar.gz) = bfbc50d92262868802d62f595c076b34f8e61a5ecaf48682328dad19defd3e7d
SIZE (vcftools-vcftools-v0.1.15_GH0.tar.gz) = 246909

cutecom Graphical serial terminal
0.20.0_2 comms search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/comms/cutecom/ && make install clean
To add the package: pkg install cutecom

PKGNAME: cutecom

distinfo:

SHA256 (cutecom-0.20.0.tar.gz) = 44bf6c3a827b5d3b3a2b201010215faebde6af42dc16f5e0f877c858c6e19fe0
SIZE (cutecom-0.20.0.tar.gz) = 22217

libgamepad Generic gamepad API
0.1.2 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : PortsMon

To install the port: cd /usr/ports/devel/libgamepad/ && make install clean
To add the package: pkg install libgamepad

PKGNAME: libgamepad

distinfo:

SHA256 (libgamepad-0.1.2.tar.xz) = 23268d2aae99f21a0365695ba9fa9e52609b9d5469642912f7625d81a39438d6
SIZE (libgamepad-0.1.2.tar.xz) = 7960

libnxt Lego NXT library
0.3 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/libnxt/ && make install clean
To add the package: pkg install libnxt

PKGNAME: libnxt

distinfo:

SHA256 (libnxt-0.3.tar.gz) = fe310cb917ec69d4e20f9d70ef96d9eec51d0434a8a3580c8a6615488526f8cf
SIZE (libnxt-0.3.tar.gz) = 16247

lnphost Lego RCX iinfrared communication API
1.0a devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/lnphost/ && make install clean
To add the package: pkg install lnphost

PKGNAME: lnphost

distinfo:

SHA256 (lnphost-1.0a.zip) = 194aa84b926b6b2a742184d45ad88ef3e8c6976ad28fdfb8cea1ed69cc236641
SIZE (lnphost-1.0a.zip) = 30007

py-instant Python module for instant inlining of C and C++ code in Python
1.2.0_2 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/py-instant/ && make install clean
To add the package: pkg install py27-instant

PKGNAME: py27-instant

distinfo:

SHA256 (instant-1.2.0.tar.gz) = 12507f90b75f7ac4e222b2b5048212fa849e650b8dae94534a88ef2fe8378618
SIZE (instant-1.2.0.tar.gz) = 125833

roboctl API and tools for communicating with Lego and Vex robots
0.3.8 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/roboctl/ && make install clean
To add the package: pkg install roboctl

PKGNAME: roboctl

distinfo:

SHA256 (roboctl-0.3.8.tar.xz) = ca2a1c700f289691eb7dd40d61ccd78cd176afc154a500eabed7919dac47c383
SIZE (roboctl-0.3.8.tar.xz) = 270384

yaggo Generate command line parser using getopt_long
1.5.9 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/yaggo/ && make install clean
To add the package: pkg install yaggo

PKGNAME: yaggo

distinfo:

SHA256 (gmarcais-yaggo-v1.5.9_GH0.tar.gz) = c96f7d5932fad30c88300446cae9a49d35b6a1fcd5a971e02de129c5d7a53bb7
SIZE (gmarcais-yaggo-v1.5.9_GH0.tar.gz) = 42480

x10 Object-oriented parallel programming language
2.2.1_6 lang search for ports that depend on this port Find issues related to this port Report an issue related to this port
Broken BROKEN: Fails to build with modern compilers (cf. PR 219282)
Deprecated DEPRECATED: Broken for more than 6 months
Expiration Date EXPIRATION DATE: 2018-03-19
Ignore IGNORE: is marked as broken: Fails to build with modern compilers (cf. PR 219282)
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-18 09:29:28
License: EPL
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/lang/x10/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: x10

distinfo:

SHA256 (x10-2.2.1-src.tar.bz2) = 7d177e4e3d6a8ad5c76b87ec9a4c96346a758883b540e84645406612b1cdf41f
SIZE (x10-2.2.1-src.tar.bz2) = 2075405
SHA256 (lpg.runtime.java_2.0.22.jar) = bb632e820f052ac5f441b66f5d9c7f8f4578a257542affa759d8569d61811bdf
SIZE (lpg.runtime.java_2.0.22.jar) = 103421
SHA256 (ecj-3.5.1.jar) = c37fb3d2b5a5065b9e538378d92ffc1904eb513b73b9e3dffbbbf7d8b7616404
SIZE (ecj-3.5.1.jar) = 1674737
SHA256 (com.ibm.wala.cast.java_1.0.0.201101071300.jar) = 6b45463b888b7e1c6109e61bcb166ed3a71601ecd579f01b5016315509a84a47
SIZE (com.ibm.wala.cast.java_1.0.0.201101071300.jar) = 62892
SHA256 (com.ibm.wala.cast_1.0.0.201101071300.jar) = b14545a2872c38ae451f946b83d6d6bcc4a6950d066786daf4707a0e5d85304b
SIZE (com.ibm.wala.cast_1.0.0.201101071300.jar) = 296742
SHA256 (com.ibm.wala.core_1.1.3.201101071300.jar) = cd8ca518ea661484e549b3e660c1282acf61f221fff9a8cb76c31cdf663196c8
SIZE (com.ibm.wala.core_1.1.3.201101071300.jar) = 1397396
SHA256 (com.ibm.wala.shrike_1.3.1.201101071300.jar) = 9672252add64728356bb732fd092dff4680fdba72face2fdd2eb8cd63793e8a6
SIZE (com.ibm.wala.shrike_1.3.1.201101071300.jar) = 233564
SHA256 (org.eclipse.equinox.common_3.6.0.v20100503.jar) = fa816ceb8eb7027badf733dbee5f6f1f9a6cdf706a193d2413676c245e40c51c
SIZE (org.eclipse.equinox.common_3.6.0.v20100503.jar) = 101957
SHA256 (commons-math-2.2.jar) = 15993bb2a3cf50f3291b40fc980a3166a0984e7b5f1abbe5232151fd94954584
SIZE (commons-math-2.2.jar) = 988514
SHA256 (bdwgc-7.1.tar.gz) = 7cc33d0dd5eedaaa88889c968daa9b8dffb14b1b1fa13e5a50b16bb2ad4a09fd
SIZE (bdwgc-7.1.tar.gz) = 1172288

matlab-installer Easy installation of Linux Matlab(r) on FreeBSD
0.2_4 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/matlab-installer/ && make install clean
To add the package: pkg install matlab-installer

PKGNAME: matlab-installer

distinfo:

SHA256 (matlab-installer-0.2.tar.xz) = 461e694d6140000cb40350daa126ae0e8c9a1e3ee0defee8c84643460bf977b6
SIZE (matlab-installer-0.2.tar.xz) = 6668

py-ffc C++ code generator for multilinear forms
1.2.0_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/py-ffc/ && make install clean
To add the package: pkg install py27-ffc

PKGNAME: py27-ffc

distinfo:

SHA256 (ffc-1.2.0.tar.gz) = ac7cca537dac4610821c9ecb0338700970d713d03a9bc176567f1979c89ed869
SIZE (ffc-1.2.0.tar.gz) = 4457544

py-fiat FInite element Automatic Tabulator
1.1.0_4 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/py-fiat/ && make install clean
To add the package: pkg install py27-fiat

PKGNAME: py27-fiat

distinfo:

SHA256 (fiat-1.1.tar.gz) = 94a9926f478ce9d12e3f0cf4dee0937dfbc7518a37ad4ac701fda3b6cb62a475
SIZE (fiat-1.1.tar.gz) = 3870562

py-ufl Unified Form Language for finite element discretizations
1.20_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/py-ufl/ && make install clean
To add the package: pkg install py27-ufl

PKGNAME: py27-ufl

distinfo:

SHA256 (ufl-1.2.0.tar.gz) = a6336b7a0bb29852696886bf02ed08ed1558050bd017de884fb7499c73bb9719
SIZE (ufl-1.2.0.tar.gz) = 748689

py-viper Minimalistic scientific plotter and visualization module
1.0.1_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/py-viper/ && make install clean
To add the package: pkg install py27-viper

PKGNAME: py27-viper

distinfo:

SHA256 (viper-1.0.1.tar.gz) = b3cff721e71a96ff62d58f9b3e32383dcfa425f69017d291d03fb3b452a3a01f
SIZE (viper-1.0.1.tar.gz) = 192880

rapid Robust and Accurate Polygon Interference Detection
2.01 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Restricted RESTRICTED: For any commercial purpose, you must request a license from http://www.cs.unc.edu/~geom/OBB/OBBT.html
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/rapid/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: rapid

distinfo:

SHA256 (RAPID_v2_01.tar.gz) = f924759b9fe144a2ed40fab54047d3bad091ff2ee857e81b70e1b466dde91143
SIZE (RAPID_v2_01.tar.gz) = 24123

ufc Unified framework for finite element assembly
2.2.0_8 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/ufc/ && make install clean
To add the package: pkg install ufc

PKGNAME: ufc

distinfo:

SHA256 (ufc-2.2.0.tar.gz) = e98cd4a748459fc62739534e87cf3d632b188b48381820672213f34ba61170e0
SIZE (ufc-2.2.0.tar.gz) = 602068

genplist Generates a static plist for a port
1.2 ports-mgmt search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/ports-mgmt/genplist/ && make install clean
To add the package: pkg install genplist

PKGNAME: genplist

distinfo:

SHA256 (genplist-1.2.tar.xz) = bf5d61dc01c2699701897cf91332d73dd1abd8e948bd954c0c0bb7710ef600eb
SIZE (genplist-1.2.tar.xz) = 5780

afni Advanced Functional Neuro Imaging
2015.11.13_5 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/afni/ && make install clean
To add the package: pkg install afni

PKGNAME: afni

distinfo:

SHA256 (afni-2015.11.13.tar.xz) = b8647ed2f522a520d90cbfd3da70d34849cec421678ff3baf0ecbb6e9e72414b
SIZE (afni-2015.11.13.tar.xz) = 48722840

dlpoly-classic Molecular dynamics simulation package
1.8_13 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/dlpoly-classic/ && make install clean
To add the package: pkg install dlpolyclassic

PKGNAME: dlpolyclassic

distinfo:

SHA256 (dl_class_1.8.tar.gz) = 4ee7e7ded64dd659ddccca6e26326045ce8f49b59217dcbb404363e5a5daf3d5
SIZE (dl_class_1.8.tar.gz) = 2769075

fvcom Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_10 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/fvcom/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: fvcom

distinfo:

SHA256 (fvcom/sourcecode1.tar.gz) = b687fccef91e37b3b98554bd80bfbf6f857703cd9bdfde166b502bee7473b7ad
SIZE (fvcom/sourcecode1.tar.gz) = 6162463

fvcom-mpi Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_10 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/fvcom-mpi/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: fvcom-openmpi

distinfo:

SHA256 (fvcom/sourcecode1.tar.gz) = b687fccef91e37b3b98554bd80bfbf6f857703cd9bdfde166b502bee7473b7ad
SIZE (fvcom/sourcecode1.tar.gz) = 6162463

nifticlib Neuroimaging Informatics Technology Initiative data format
2.0.0_1 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: PD
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/nifticlib/ && make install clean
To add the package: pkg install nifticlib

PKGNAME: nifticlib

distinfo:

SHA256 (nifticlib-2.0.0.tar.gz) = a3e988e6a32ec57833056f6b09f940c69e79829028da121ff2c5c6f7f94a7f88
SIZE (nifticlib-2.0.0.tar.gz) = 258491

openkim Knowledgebase of Interatomic Models
1.1.1_5 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: CDDL
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/openkim/ && make install clean
To add the package: pkg install openkim

PKGNAME: openkim

distinfo:

SHA256 (openkim-api-v1.1.1.tgz) = 683bda8011754b2525e6f935f52909c141e9d39c2184cefb98babb9e4e5e0959
SIZE (openkim-api-v1.1.1.tgz) = 1529043

voro++ Three-dimensional computations of the Voronoi tessellation
0.4.6 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/voro++/ && make install clean
To add the package: pkg install voro++

PKGNAME: voro++

distinfo:

SHA256 (voro++-0.4.6.tar.gz) = ef7970071ee2ce3800daa8723649ca069dc4c71cc25f0f7d22552387f3ea437e
SIZE (voro++-0.4.6.tar.gz) = 809124

auto-admin Portable tools for automating systems management
0.4.2 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-12-28 19:39:50
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/auto-admin/ && make install clean
To add the package: pkg install auto-admin

PKGNAME: auto-admin

distinfo:

TIMESTAMP = 1514486919
SHA256 (auto-admin-0.4.2.tar.xz) = bd164f68ecfd6b07981d6811e226a7d0ab3ba5e7e1ca1a5727092a31df7ea942
SIZE (auto-admin-0.4.2.tar.xz) = 54852

condor High-throughput computing on distributively owned resources
8.4.9_8 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: APACHE20
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/condor/ && make install clean
To add the package: pkg install condor

PKGNAME: condor

distinfo:

TIMESTAMP = 1475844209
SHA256 (condor_src-8.4.9-all-all.tar.gz) = 56be45f54c014680dfd5439749b02fb9da4a11fb5645ff36d22dd0ccef1043ce
SIZE (condor_src-8.4.9-all-all.tar.gz) = 17379991

desktop-installer Quickly configure a FreeBSD desktop system
0.6.0 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/desktop-installer/ && make install clean
To add the package: pkg install desktop-installer

PKGNAME: desktop-installer

distinfo:

TIMESTAMP = 1514490603
SHA256 (desktop-installer-0.6.0.tar.xz) = 1177e260e40244ef06cea372bf2b7c4f139decfb093e06015c6a52048b897e98
SIZE (desktop-installer-0.6.0.tar.xz) = 169440

diskimage-tools Convenience tools for manipulating disk images
0.1 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/diskimage-tools/ && make install clean
To add the package: pkg install diskimage-tools

PKGNAME: diskimage-tools

distinfo:

SHA256 (diskimage-tools-0.1.tar.xz) = 4f0b6257fe7ea989adaff356c0e1ad6c1f1d206855164048aecb6174585f50b0
SIZE (diskimage-tools-0.1.tar.xz) = 1748

endian Report endianness of a system
1.1 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : PortsMon

To install the port: cd /usr/ports/sysutils/endian/ && make install clean
To add the package: pkg install endian

PKGNAME: endian

distinfo:

SHA256 (endian-1.1.tar.xz) = 490183dc9466d97f8ca4a6b03c3823a73efbf8686c1c2023c7978ce5f2aa8603
SIZE (endian-1.1.tar.xz) = 2912

ganglia-monitor-core Ganglia cluster monitor, monitoring daemon
3.7.1 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/ganglia-monitor-core/ && make install clean
To add the package: pkg install ganglia-monitor-core

PKGNAME: ganglia-monitor-core

distinfo:

TIMESTAMP = 1470747673
SHA256 (ganglia-3.7.1.tar.gz) = e735a6218986a0ff77c737e5888426b103196c12dc2d679494ca9a4269ca69a3
SIZE (ganglia-3.7.1.tar.gz) = 1311019

mcweject Removable media eject
1.1 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD3CLAUSE
SVNWeb : PortsMon

To install the port: cd /usr/ports/sysutils/mcweject/ && make install clean
To add the package: pkg install mcweject

PKGNAME: mcweject

distinfo:

SHA256 (mcweject-1.1.tar.xz) = a42f537c49a47d8044cb918912c921221e0cfe311962ac1364a2de353a83b5cc
SIZE (mcweject-1.1.tar.xz) = 5728

parafly Process multiple commands in parallel on a single server
2013.01.21_3 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/parafly/ && make install clean
To add the package: pkg install parafly

PKGNAME: parafly

distinfo:

SHA256 (parafly-r2013-01-21.tgz) = 64cf7ac2d4af0801b78d58f4057a1489d76b2b8ae59c78997f434d1239fa4abe
SIZE (parafly-r2013-01-21.tgz) = 198711

webbrowser Wrapper for running the "best" available WEB browser
0.3 www search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/www/webbrowser/ && make install clean
To add the package: pkg install webbrowser

PKGNAME: webbrowser

distinfo:

SHA256 (webbrowser-0.3.tar.xz) = 7e100607622d36c5822ffcf8b7cf135c5a70a29179ce832e86c07037f2f0c31f
SIZE (webbrowser-0.3.tar.xz) = 1656

lilyterm Lightweight, but functional terminal emulator
0.9.9.4_1 x11 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-12-18 03:55:29
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/x11/lilyterm/ && make install clean
To add the package: pkg install lilyterm

PKGNAME: lilyterm

distinfo:

TIMESTAMP = 1509307368
SHA256 (Tetralet-LilyTerm-v0.9.9.4_GH0.tar.gz) = 310cafcc6c155db1862ee42bd2d57da5083d8f6616ffa3a50083113c06846c3a
SIZE (Tetralet-LilyTerm-v0.9.9.4_GH0.tar.gz) = 345032

Number of ports: 59
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