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Number of ports: 82
py-xopen Open compressed files transparently
0.3.5 archivers search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-07-07 14:41:19
SVN Revision: 474083
License: MIT
SVNWeb : Homepage : PortsMon

Dependency line: py27-xopen>0:archivers/py-xopen


To install the port: cd /usr/ports/archivers/py-xopen/ && make install clean
To add the package: pkg install py27-xopen

PKGNAME: py27-xopen

There is no flavor information for this port.

praat Phonetics by Computer
5.4.08_3 audio search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: praat>0:audio/praat


To install the port: cd /usr/ports/audio/praat/ && make install clean
To add the package: pkg install praat

PKGNAME: praat

There is no flavor information for this port.

bamtools API and toolkit for handling BAM files
2.5.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-25 20:25:40
SVN Revision: 488341
License: MIT
SVNWeb : Homepage : PortsMon

Dependency line: bamtools>0:biology/bamtools


To install the port: cd /usr/ports/biology/bamtools/ && make install clean
To add the package: pkg install bamtools

PKGNAME: bamtools

There is no flavor information for this port.

bedtools Toolset for genome set arithmetic such as intersect, union
2.27.1_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: bedtools>0:biology/bedtools


To install the port: cd /usr/ports/biology/bedtools/ && make install clean
To add the package: pkg install bedtools

PKGNAME: bedtools

There is no flavor information for this port.

bowtie Ultrafast, memory-efficient short read aligner
1.1.2_8 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: ART10
SVNWeb : Homepage : PortsMon

Dependency line: bowtie>0:biology/bowtie


To install the port: cd /usr/ports/biology/bowtie/ && make install clean
To add the package: pkg install bowtie

PKGNAME: bowtie

There is no flavor information for this port.

bowtie2 Ultrafast, memory-efficient short read aligner
2.3.3.1_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-10-11 15:47:14
SVN Revision: 481833
License: GPLv3+
SVNWeb : Homepage : PortsMon

Dependency line: bowtie2>0:biology/bowtie2


To install the port: cd /usr/ports/biology/bowtie2/ && make install clean
To add the package: pkg install bowtie2

PKGNAME: bowtie2

There is no flavor information for this port.

bwa Burrows-Wheeler sequence aligner
0.7.17 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: bwa>0:biology/bwa


To install the port: cd /usr/ports/biology/bwa/ && make install clean
To add the package: pkg install bwa

PKGNAME: bwa

There is no flavor information for this port.

canu Single molecule sequence assembler
1.8_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: canu>0:biology/canu


To install the port: cd /usr/ports/biology/canu/ && make install clean
To add the package: pkg install canu

PKGNAME: canu

There is no flavor information for this port.

cd-hit Clustering and comparing protein or nucleotide sequences
4.6.6_5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: cd-hit>0:biology/cd-hit


To install the port: cd /usr/ports/biology/cd-hit/ && make install clean
To add the package: pkg install cd-hit

PKGNAME: cd-hit

There is no flavor information for this port.

cdbfasta Fast indexing and retrieval of FASTA records from flat file databases
2010.07.22 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: not specified in port
SVNWeb : Homepage : PortsMon

Dependency line: cdbfasta>0:biology/cdbfasta


To install the port: cd /usr/ports/biology/cdbfasta/ && make install clean
To add the package: pkg install cdbfasta

PKGNAME: cdbfasta

There is no flavor information for this port.

clustal-omega Multiple alignment of nucleic acid and protein, replaces clustalw
1.2.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-21 23:15:26
SVN Revision: 470582
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: clustal-omega>0:biology/clustal-omega


To install the port: cd /usr/ports/biology/clustal-omega/ && make install clean
To add the package: pkg install clustal-omega

PKGNAME: clustal-omega

There is no flavor information for this port.

clustalw Multiple alignment program for DNA or proteins
2.1_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-21 02:13:40
SVN Revision: 470494
License: LGPL3
SVNWeb : Homepage : PortsMon

Dependency line: clustalw>0:biology/clustalw


To install the port: cd /usr/ports/biology/clustalw/ && make install clean
To add the package: pkg install clustalw

PKGNAME: clustalw

There is no flavor information for this port.

clustalx Multiple alignment of nucleic acid and protein sequences with GUI
2.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Deprecated DEPRECATED: Qt4 has been EOL since december 2015
Expiration Date EXPIRATION DATE: 2019-03-15
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-02 15:41:48
SVN Revision: 486467
License: LGPL3
SVNWeb : Homepage : PortsMon

Dependency line: clustalx>0:biology/clustalx


To install the port: cd /usr/ports/biology/clustalx/ && make install clean
To add the package: pkg install clustalx

PKGNAME: clustalx

There is no flavor information for this port.

ddocent Bash pipeline for RAD sequencing
2.2.25_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: MIT
SVNWeb : Homepage : PortsMon

Dependency line: dDocent>0:biology/ddocent


To install the port: cd /usr/ports/biology/ddocent/ && make install clean
To add the package: pkg install dDocent

PKGNAME: dDocent

There is no flavor information for this port.

fastahack Utility for indexing and sequence extraction from FASTA files
g20160702 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-16 15:50:46
SVN Revision: 467485
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: fastahack>0:biology/fastahack


To install the port: cd /usr/ports/biology/fastahack/ && make install clean
To add the package: pkg install fastahack

PKGNAME: fastahack

There is no flavor information for this port.

fastool Simple and quick FastQ and FastA tool for file reading and conversion
0.1.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: fastool>0:biology/fastool


To install the port: cd /usr/ports/biology/fastool/ && make install clean
To add the package: pkg install fastool

PKGNAME: fastool

There is no flavor information for this port.

fastqc Quality control tool for high throughput sequence data
0.11.5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2017-11-30 22:54:29
SVN Revision: 455236
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: fastqc>0:biology/fastqc


To install the port: cd /usr/ports/biology/fastqc/ && make install clean
To add the package: pkg install fastqc

PKGNAME: fastqc

There is no flavor information for this port.

fasttree Approximately-maximum-likelihood phylogenetic trees from alignments
2.1.10_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: GPLv2+
SVNWeb : Homepage : PortsMon

Dependency line: FastTree>0:biology/fasttree


To install the port: cd /usr/ports/biology/fasttree/ && make install clean
To add the package: pkg install FastTree

PKGNAME: FastTree

There is no flavor information for this port.

fastx-toolkit CLI tools for Short-Reads FASTA/FASTQ files preprocessing
0.0.14 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-16 16:13:43
SVN Revision: 470124
License: AGPLv3+
SVNWeb : Homepage : PortsMon

Dependency line: fastx_toolkit>0:biology/fastx-toolkit


To install the port: cd /usr/ports/biology/fastx-toolkit/ && make install clean
To add the package: pkg install fastx_toolkit

PKGNAME: fastx_toolkit

There is no flavor information for this port.

freebayes Bayesian haplotype-based polymorphism discovery and genotyping
1.2.0_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: MIT
SVNWeb : Homepage : PortsMon

Dependency line: freebayes>0:biology/freebayes


To install the port: cd /usr/ports/biology/freebayes/ && make install clean
To add the package: pkg install freebayes

PKGNAME: freebayes

There is no flavor information for this port.

gmap Genomic Mapping and Alignment Program for mRNA and EST Sequences
2015.09.21 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GMAP
SVNWeb : Homepage : PortsMon

Dependency line: gmap>0:biology/gmap


To install the port: cd /usr/ports/biology/gmap/ && make install clean
To add the package: pkg install gmap

PKGNAME: gmap

There is no flavor information for this port.

hisat2 Alignment program for mapping next-generation sequencing reads
2.1.0.23 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-01-11 16:02:05
SVN Revision: 489981
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: hisat2>0:biology/hisat2


To install the port: cd /usr/ports/biology/hisat2/ && make install clean
To add the package: pkg install hisat2

PKGNAME: hisat2

There is no flavor information for this port.

jellyfish Fast, memory-efficient counting of k-mers in DNA
2.2.6_4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: GPLv3+
SVNWeb : Homepage : PortsMon

Dependency line: jellyfish>0:biology/jellyfish


To install the port: cd /usr/ports/biology/jellyfish/ && make install clean
To add the package: pkg install jellyfish

PKGNAME: jellyfish

There is no flavor information for this port.

kallisto Quantify abundances of transcripts from RNA-Seq data
0.43.1_4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-01-05 22:46:54
SVN Revision: 489412
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: kallisto>0:biology/kallisto


To install the port: cd /usr/ports/biology/kallisto/ && make install clean
To add the package: pkg install kallisto

PKGNAME: kallisto

There is no flavor information for this port.

libgtextutils Gordon's text utilities
0.7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-03-29 16:41:07
SVN Revision: 465904
License: AGPLv3
SVNWeb : Homepage : PortsMon

Dependency line: libgtextutils>0:biology/libgtextutils


To install the port: cd /usr/ports/biology/libgtextutils/ && make install clean
To add the package: pkg install libgtextutils

PKGNAME: libgtextutils

There is no flavor information for this port.

ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool
2.8.1_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-01-06 20:39:43
SVN Revision: 489529
License: PD
SVNWeb : Homepage : PortsMon

Dependency line: ncbi-blast+>0:biology/ncbi-blast+


To install the port: cd /usr/ports/biology/ncbi-blast+/ && make install clean
To add the package: pkg install ncbi-blast+

PKGNAME: ncbi-blast+

There is no flavor information for this port.

p5-TrimGalore Wrapper around Cutadapt and FastQC for adapter and quality trimming
0.4.5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2017-12-09 13:23:32
SVN Revision: 455857
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: p5-TrimGalore>0:biology/p5-TrimGalore


To install the port: cd /usr/ports/biology/p5-TrimGalore/ && make install clean
To add the package: pkg install p5-TrimGalore

PKGNAME: p5-TrimGalore

There is no flavor information for this port.

p5-transdecoder Identify candidate coding regions within transcript sequences
5.4.0_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: p5-transdecoder>0:biology/p5-transdecoder


To install the port: cd /usr/ports/biology/p5-transdecoder/ && make install clean
To add the package: pkg install p5-transdecoder

PKGNAME: p5-transdecoder

There is no flavor information for this port.

pbbam PacBio BAM C++ library, with SWIG bindings
g20180416_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: pbbam>0:biology/pbbam


To install the port: cd /usr/ports/biology/pbbam/ && make install clean
To add the package: pkg install pbbam

PKGNAME: pbbam

There is no flavor information for this port.

pbcopper Core C++ library for Pacific Biosciences tools
g20180413_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: pbcopper>0:biology/pbcopper


To install the port: cd /usr/ports/biology/pbcopper/ && make install clean
To add the package: pkg install pbcopper

PKGNAME: pbcopper

There is no flavor information for this port.

pbseqan Pacific Biosciences patched and stripped down SeqAn
g20171002 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-21 18:21:30
SVN Revision: 467901
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: pbseqan>0:biology/pbseqan


To install the port: cd /usr/ports/biology/pbseqan/ && make install clean
To add the package: pkg install pbseqan

PKGNAME: pbseqan

There is no flavor information for this port.

pear-merger Memory-efficient and highly accurate paired-end read merger
0.9.6 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-06-22 00:52:37
SVN Revision: 473009
License: CC-BY-NC-SA-3.0
SVNWeb : Homepage : PortsMon

Dependency line: pear-merger>0:biology/pear-merger


To install the port: cd /usr/ports/biology/pear-merger/ && make install clean
To add the package: pkg install pear-merger

PKGNAME: pear-merger

There is no flavor information for this port.

plinkseq Toolset for working with human genetic variation data
0.10_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: plinkseq>0:biology/plinkseq


To install the port: cd /usr/ports/biology/plinkseq/ && make install clean
To add the package: pkg install plinkseq

PKGNAME: plinkseq

There is no flavor information for this port.

py-cutadapt Trim adapters from high-throughput sequencing reads
1.18 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-09-20 15:10:52
SVN Revision: 480173
License: MIT
SVNWeb : Homepage : PortsMon

Dependency line: py27-cutadapt>0:biology/py-cutadapt


To install the port: cd /usr/ports/biology/py-cutadapt/ && make install clean
To add the package: pkg install py27-cutadapt

PKGNAME: py27-cutadapt

There is no flavor information for this port.

py-macs2 Analysis of chromatin immunoprecipitation (ChIP) sequences
2.1.0.p20170505_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: py27-macs2>0:biology/py-macs2


To install the port: cd /usr/ports/biology/py-macs2/ && make install clean
To add the package: pkg install py27-macs2

PKGNAME: py27-macs2

There is no flavor information for this port.

rainbow Efficient clustering and assembling of short reads, especially for RAD
2.0.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-02 17:50:46
SVN Revision: 466235
License: GPLv3+
SVNWeb : Homepage : PortsMon

Dependency line: rainbow>0:biology/rainbow


To install the port: cd /usr/ports/biology/rainbow/ && make install clean
To add the package: pkg install rainbow

PKGNAME: rainbow

There is no flavor information for this port.

seqtk Tool for processing sequences in FASTA/FASTQ format
1.2.8 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-03 21:57:05
SVN Revision: 466379
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: seqtk>0:biology/seqtk


To install the port: cd /usr/ports/biology/seqtk/ && make install clean
To add the package: pkg install seqtk

PKGNAME: seqtk

There is no flavor information for this port.

slclust Single-linkage clustering with Jaccard similarity
2010.02.02 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: ART10
SVNWeb : Homepage : PortsMon

Dependency line: slclust>0:biology/slclust


To install the port: cd /usr/ports/biology/slclust/ && make install clean
To add the package: pkg install slclust

PKGNAME: slclust

There is no flavor information for this port.

smithwaterman Smith-waterman-gotoh alignment algorithm
g20160702 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-15 18:45:52
SVN Revision: 467402
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: smithwaterman>0:biology/smithwaterman


To install the port: cd /usr/ports/biology/smithwaterman/ && make install clean
To add the package: pkg install smithwaterman

PKGNAME: smithwaterman

There is no flavor information for this port.

stacks Software pipeline for building loci from short-read sequences
2.3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-01-12 15:53:01
SVN Revision: 490062
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: stacks>0:biology/stacks


To install the port: cd /usr/ports/biology/stacks/ && make install clean
To add the package: pkg install stacks

PKGNAME: stacks

There is no flavor information for this port.

tabixpp C++ wrapper to tabix indexer
1.0.0.10 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-15 00:52:17
SVN Revision: 467343
License: MIT
SVNWeb : Homepage : PortsMon

Dependency line: tabixpp>0:biology/tabixpp


To install the port: cd /usr/ports/biology/tabixpp/ && make install clean
To add the package: pkg install tabixpp

PKGNAME: tabixpp

There is no flavor information for this port.

trimadap Trim adapter sequences from Illumina data using heuristic rules
0.1.3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-06-22 00:52:37
SVN Revision: 473009
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: trimadap>0:biology/trimadap


To install the port: cd /usr/ports/biology/trimadap/ && make install clean
To add the package: pkg install trimadap

PKGNAME: trimadap

There is no flavor information for this port.

trimmomatic Flexible read trimming tool for Illumina NGS data
0.35 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: trimmomatic>0:biology/trimmomatic


To install the port: cd /usr/ports/biology/trimmomatic/ && make install clean
To add the package: pkg install trimmomatic

PKGNAME: trimmomatic

There is no flavor information for this port.

unanimity Pacific Biosciences consensus library and applications
3.1.0_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-25 20:25:40
SVN Revision: 488341
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: unanimity>0:biology/unanimity


To install the port: cd /usr/ports/biology/unanimity/ && make install clean
To add the package: pkg install unanimity

PKGNAME: unanimity

There is no flavor information for this port.

vcflib C++ library and CLI tools for parsing and manipulating VCF files
1.0.0.r1.130 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-06-22 01:03:08
SVN Revision: 473010
License: MIT
SVNWeb : Homepage : PortsMon

Dependency line: vcflib>0:biology/vcflib


To install the port: cd /usr/ports/biology/vcflib/ && make install clean
To add the package: pkg install vcflib

PKGNAME: vcflib

There is no flavor information for this port.

vcftools Tools for working with VCF genomics files
0.1.16 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-08-04 02:29:29
SVN Revision: 476330
License: LGPL3
SVNWeb : Homepage : PortsMon

Dependency line: vcftools>0:biology/vcftools


To install the port: cd /usr/ports/biology/vcftools/ && make install clean
To add the package: pkg install vcftools

PKGNAME: vcftools

There is no flavor information for this port.

cutecom Graphical serial terminal for embedded programming
0.51.0 comms search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-01-21 13:18:36
SVN Revision: 490857
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: cutecom>0:comms/cutecom


To install the port: cd /usr/ports/comms/cutecom/ && make install clean
To add the package: pkg install cutecom

PKGNAME: cutecom

There is no flavor information for this port.

libgamepad Generic gamepad API
0.1.2 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb : PortsMon

Dependency line: libgamepad>0:devel/libgamepad


To install the port: cd /usr/ports/devel/libgamepad/ && make install clean
To add the package: pkg install libgamepad

PKGNAME: libgamepad

There is no flavor information for this port.

libnxt Lego NXT library
0.3 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: not specified in port
SVNWeb : Homepage : PortsMon

Dependency line: libnxt>0:devel/libnxt


To install the port: cd /usr/ports/devel/libnxt/ && make install clean
To add the package: pkg install libnxt

PKGNAME: libnxt

There is no flavor information for this port.

lnphost Lego RCX iinfrared communication API
1.0a devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: lnphost>0:devel/lnphost


To install the port: cd /usr/ports/devel/lnphost/ && make install clean
To add the package: pkg install lnphost

PKGNAME: lnphost

There is no flavor information for this port.

py-instant Python module for instant inlining of C and C++ code in Python
1.2.0_2 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-02-19 11:10:43
SVN Revision: 462307
License: LGPL3
SVNWeb : Homepage : PortsMon

Dependency line: py27-instant>0:devel/py-instant


To install the port: cd /usr/ports/devel/py-instant/ && make install clean
To add the package: pkg install py27-instant

PKGNAME: py27-instant

There is no flavor information for this port.

roboctl API and tools for communicating with Lego and Vex robots
0.3.8 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: roboctl>0:devel/roboctl


To install the port: cd /usr/ports/devel/roboctl/ && make install clean
To add the package: pkg install roboctl

PKGNAME: roboctl

There is no flavor information for this port.

yaggo Generate command line parser using getopt_long
1.5.9 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: yaggo>0:devel/yaggo


To install the port: cd /usr/ports/devel/yaggo/ && make install clean
To add the package: pkg install yaggo

PKGNAME: yaggo

There is no flavor information for this port.

intervaltree Minimal C++ interval tree implementation
g20151213_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: MIT
SVNWeb : Homepage : PortsMon

Dependency line: intervaltree>0:math/intervaltree


To install the port: cd /usr/ports/math/intervaltree/ && make install clean
To add the package: pkg install intervaltree

PKGNAME: intervaltree

There is no flavor information for this port.

matlab-installer Easy installation of Linux Matlab(r) on FreeBSD
0.2_4 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: matlab-installer>0:math/matlab-installer


To install the port: cd /usr/ports/math/matlab-installer/ && make install clean
To add the package: pkg install matlab-installer

PKGNAME: matlab-installer

There is no flavor information for this port.

multichoose Generate multiset combinations (n multichoose k)
1.0.3.2 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-16 19:31:42
SVN Revision: 467502
License: MIT
SVNWeb : Homepage : PortsMon

Dependency line: multichoose>0:math/multichoose


To install the port: cd /usr/ports/math/multichoose/ && make install clean
To add the package: pkg install multichoose

PKGNAME: multichoose

There is no flavor information for this port.

py-ffc C++ code generator for multilinear forms
1.2.0_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-02-19 11:10:43
SVN Revision: 462307
License: LGPL3
SVNWeb : Homepage : PortsMon

Dependency line: py27-ffc>0:math/py-ffc


To install the port: cd /usr/ports/math/py-ffc/ && make install clean
To add the package: pkg install py27-ffc

PKGNAME: py27-ffc

There is no flavor information for this port.

py-fiat FInite element Automatic Tabulator
1.1.0_6 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: LGPL3
SVNWeb : Homepage : PortsMon

Dependency line: py27-fiat>0:math/py-fiat


To install the port: cd /usr/ports/math/py-fiat/ && make install clean
To add the package: pkg install py27-fiat

PKGNAME: py27-fiat

There is no flavor information for this port.

py-ufl Unified Form Language for finite element discretizations
1.20_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-02-19 11:10:43
SVN Revision: 462307
License: LGPL3
SVNWeb : Homepage : PortsMon

Dependency line: py27-ufl>0:math/py-ufl


To install the port: cd /usr/ports/math/py-ufl/ && make install clean
To add the package: pkg install py27-ufl

PKGNAME: py27-ufl

There is no flavor information for this port.

py-viper Minimalistic scientific plotter and visualization module
1.0.1_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-02-19 11:10:43
SVN Revision: 462307
License: LGPL3
SVNWeb : Homepage : PortsMon

Dependency line: py27-viper>0:math/py-viper


To install the port: cd /usr/ports/math/py-viper/ && make install clean
To add the package: pkg install py27-viper

PKGNAME: py27-viper

There is no flavor information for this port.

rapid Robust and Accurate Polygon Interference Detection
2.01 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-19 15:09:01
SVN Revision: 470408
License: UNKNOWN
SVNWeb : Homepage : PortsMon

Dependency line: rapid>0:math/rapid


To install the port: cd /usr/ports/math/rapid/ && make install clean
To add the package: pkg install rapid

PKGNAME: rapid

There is no flavor information for this port.

genplist Generates a static plist for a port
1.2 ports-mgmt search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: genplist>0:ports-mgmt/genplist


To install the port: cd /usr/ports/ports-mgmt/genplist/ && make install clean
To add the package: pkg install genplist

PKGNAME: genplist

There is no flavor information for this port.

afni Advanced Functional Neuro Imaging
2015.11.13_8 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: GPLv2
SVNWeb : Homepage : PortsMon

Dependency line: afni>0:science/afni


To install the port: cd /usr/ports/science/afni/ && make install clean
To add the package: pkg install afni

PKGNAME: afni

There is no flavor information for this port.

dlpoly-classic Molecular dynamics simulation package
1.8_16 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: not specified in port
SVNWeb : Homepage : PortsMon

Dependency line: dlpolyclassic>0:science/dlpoly-classic


To install the port: cd /usr/ports/science/dlpoly-classic/ && make install clean
To add the package: pkg install dlpolyclassic

PKGNAME: dlpolyclassic

There is no flavor information for this port.

fsom Tiny C library for managing SOM (Self-Organizing Maps) neural networks
g20151117_1 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: fsom>0:science/fsom


To install the port: cd /usr/ports/science/fsom/ && make install clean
To add the package: pkg install fsom

PKGNAME: fsom

There is no flavor information for this port.

fvcom Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_13 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: not specified in port
SVNWeb : Homepage : PortsMon

Dependency line: fvcom>0:science/fvcom


To install the port: cd /usr/ports/science/fvcom/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: fvcom

There is no flavor information for this port.

fvcom-mpi Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_12 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: not specified in port
SVNWeb : Homepage : PortsMon

Dependency line: fvcom-openmpi>0:science/fvcom-mpi


To install the port: cd /usr/ports/science/fvcom-mpi/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: fvcom-openmpi

There is no flavor information for this port.

nifticlib Neuroimaging Informatics Technology Initiative data format
2.0.0_1 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: PD
SVNWeb : Homepage : PortsMon

Dependency line: nifticlib>0:science/nifticlib


To install the port: cd /usr/ports/science/nifticlib/ && make install clean
To add the package: pkg install nifticlib

PKGNAME: nifticlib

There is no flavor information for this port.

openkim Knowledgebase of Interatomic Models
1.1.1_8 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: CDDL
SVNWeb : Homepage : PortsMon

Dependency line: openkim>0:science/openkim


To install the port: cd /usr/ports/science/openkim/ && make install clean
To add the package: pkg install openkim

PKGNAME: openkim

There is no flavor information for this port.

voro++ Three-dimensional computations of the Voronoi tessellation
0.4.6_1 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-11-04 15:52:43
SVN Revision: 484101
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: voro++>0:science/voro++


To install the port: cd /usr/ports/science/voro++/ && make install clean
To add the package: pkg install voro++

PKGNAME: voro++

There is no flavor information for this port.

auto-admin Portable tools for automating systems management
0.4.6 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-28 14:06:04
SVN Revision: 488601
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: auto-admin>0:sysutils/auto-admin


To install the port: cd /usr/ports/sysutils/auto-admin/ && make install clean
To add the package: pkg install auto-admin

PKGNAME: auto-admin

There is no flavor information for this port.

condor High-throughput computing on distributively owned resources
8.4.12_5 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: APACHE20
SVNWeb : Homepage : PortsMon

Dependency line: condor>0:sysutils/condor


To install the port: cd /usr/ports/sysutils/condor/ && make install clean
To add the package: pkg install condor

PKGNAME: condor

There is no flavor information for this port.

desktop-installer Quickly configure a FreeBSD desktop system
0.6.4 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-28 14:57:34
SVN Revision: 488604
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: desktop-installer>0:sysutils/desktop-installer


To install the port: cd /usr/ports/sysutils/desktop-installer/ && make install clean
To add the package: pkg install desktop-installer

PKGNAME: desktop-installer

There is no flavor information for this port.

diskimage-tools Convenience tools for manipulating disk images
0.2 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-03-01 02:25:59
SVN Revision: 463277
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: diskimage-tools>0:sysutils/diskimage-tools


To install the port: cd /usr/ports/sysutils/diskimage-tools/ && make install clean
To add the package: pkg install diskimage-tools

PKGNAME: diskimage-tools

There is no flavor information for this port.

endian Report endianness of a system
1.1 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb : PortsMon

Dependency line: endian>0:sysutils/endian


To install the port: cd /usr/ports/sysutils/endian/ && make install clean
To add the package: pkg install endian

PKGNAME: endian

There is no flavor information for this port.

filevercmp Compare version strings as in sort --version-sort
g20151117 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-16 17:21:32
SVN Revision: 467487
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: filevercmp>0:sysutils/filevercmp


To install the port: cd /usr/ports/sysutils/filevercmp/ && make install clean
To add the package: pkg install filevercmp

PKGNAME: filevercmp

There is no flavor information for this port.

ganglia-monitor-core Ganglia cluster monitor, monitoring daemon
3.7.1_2 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-03-21 21:24:44
SVN Revision: 465240
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: ganglia-monitor-core>0:sysutils/ganglia-monitor-core


To install the port: cd /usr/ports/sysutils/ganglia-monitor-core/ && make install clean
To add the package: pkg install ganglia-monitor-core

PKGNAME: ganglia-monitor-core

There is no flavor information for this port.

ganglia-webfrontend Ganglia cluster monitor, web frontend
3.7.2_2 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-09-21 15:57:26
SVN Revision: 480273
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: ganglia-webfrontend>0:sysutils/ganglia-webfrontend


To install the port: cd /usr/ports/sysutils/ganglia-webfrontend/ && make install clean
To add the package: pkg install ganglia-webfrontend

PKGNAME: ganglia-webfrontend

There is no flavor information for this port.

mcweject Removable media eject
1.1 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD3CLAUSE
SVNWeb : PortsMon

Dependency line: mcweject>0:sysutils/mcweject


To install the port: cd /usr/ports/sysutils/mcweject/ && make install clean
To add the package: pkg install mcweject

PKGNAME: mcweject

There is no flavor information for this port.

parafly Process multiple commands in parallel on a single server
2013.01.21_6 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: parafly>0:sysutils/parafly


To install the port: cd /usr/ports/sysutils/parafly/ && make install clean
To add the package: pkg install parafly

PKGNAME: parafly

There is no flavor information for this port.

webbrowser Wrapper for running the "best" available WEB browser
0.3 www search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

Dependency line: webbrowser>0:www/webbrowser


To install the port: cd /usr/ports/www/webbrowser/ && make install clean
To add the package: pkg install webbrowser

PKGNAME: webbrowser

There is no flavor information for this port.

lilyterm Lightweight, but functional terminal emulator
0.9.9.4_1 x11 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2017-12-18 03:55:29
SVN Revision: 456586
License: GPLv3
SVNWeb : Homepage : PortsMon

Dependency line: lilyterm>0:x11/lilyterm


To install the port: cd /usr/ports/x11/lilyterm/ && make install clean
To add the package: pkg install lilyterm

PKGNAME: lilyterm

There is no flavor information for this port.

Number of ports: 82
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