notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

Hardware failure

The website is running on the old server. The new server stopped working at about 0200 UTC on 2020-08-22. The database was restored from 2020-08-21 00:59:15+00 UTC. We think we have covered all commits. Nothing should be missing. Any changes you made to your accounts after the restore date will be lost. Sorry about that.
Search FreshPorts using Google

The FreshPorts Search


Include deleted ports Case sensitive search Sort by:
Include /src tree
Output format:
HTML
Plain Text
Maximum Effort Minimal output
Branch:

Notes

  • Case sensitivity is ignored for "sounds like" and output is ordered by the soundex.
  • When searching on 'Message ID', the type of match is ignored.
  • When searching on 'Commit Message' only 'containing' is used.
  • When searching by 'Under a pathname', your path must start with something like /ports/, /doc/, or /src/. All commits under that point will be returned. The selected match type is ignored and defaults to 'Starts with'.
  • Searching for 'sounds like' is only valid for Committer, Maintainer, Package Name, and Port Name.
Number of ports: 90
py-lzstring LZ-based in-memory string compression
1.0.4 archivers search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-22 17:15:07
SVN Revision: 512591
License: MIT
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}lzstring>0:archivers/py-lzstring
To install the port: cd /usr/ports/archivers/py-lzstring/ && make install clean
To add the package: pkg install py36-lzstring
PKGNAME: py36-lzstring
Package flavors (<flavor>: <package>)
  • py36: py36-lzstring
  • py27: py27-lzstring

py-xopen Open compressed files transparently
0.8.4 archivers search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-11-23 14:41:38
SVN Revision: 518241
License: MIT
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}xopen>0:archivers/py-xopen
To install the port: cd /usr/ports/archivers/py-xopen/ && make install clean
To add the package: pkg install py36-xopen
PKGNAME: py36-xopen
Package flavors (<flavor>: <package>)
  • py36: py36-xopen

bamtools API and toolkit for handling BAM files
2.5.1_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-06-30 18:46:18
SVN Revision: 540909
License: MIT
SVNWeb : Homepage
Dependency lines:
  • bamtools>0:biology/bamtools
To install the port: cd /usr/ports/biology/bamtools/ && make install clean
To add the package: pkg install bamtools
PKGNAME: bamtools
Flavors: there is no flavor information for this port.

bcftools Tools for manipulating next-generation sequencing data
1.10.2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-03 19:16:54
SVN Revision: 544096
License: MIT GPLv3
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:biology/bcftools
To install the port: cd /usr/ports/biology/bcftools/ && make install clean
To add the package: pkg install bcftools
PKGNAME: bcftools
Flavors: there is no flavor information for this port.

bedtools Toolset for genome set arithmetic such as intersect, union
2.29.2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-12-19 01:04:11
SVN Revision: 520414
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:biology/bedtools
To install the port: cd /usr/ports/biology/bedtools/ && make install clean
To add the package: pkg install bedtools
PKGNAME: bedtools
Flavors: there is no flavor information for this port.

bioawk BWK awk modified for biological data
1.0.7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-06-05 03:45:33
SVN Revision: 537983
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • bioawk>0:biology/bioawk
To install the port: cd /usr/ports/biology/bioawk/ && make install clean
To add the package: pkg install bioawk
PKGNAME: bioawk
Flavors: there is no flavor information for this port.

bolt-lmm Mixed model association testing and variance component analysis
2.3.4_4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-09-27 08:41:33
SVN Revision: 550247
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • bolt-lmm>0:biology/bolt-lmm
To install the port: cd /usr/ports/biology/bolt-lmm/ && make install clean
To add the package: pkg install bolt-lmm
PKGNAME: bolt-lmm
Flavors: there is no flavor information for this port.

bowtie Ultrafast, memory-efficient short read aligner
1.1.2_9 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-07-04 11:46:08
SVN Revision: 541191
License: ART10
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:biology/bowtie
To install the port: cd /usr/ports/biology/bowtie/ && make install clean
To add the package: pkg install bowtie
PKGNAME: bowtie
Flavors: there is no flavor information for this port.

bowtie2 Ultrafast, memory-efficient short read aligner
2.4.1_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-07-17 11:12:26
SVN Revision: 542423
License: GPLv3+
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:biology/bowtie2
To install the port: cd /usr/ports/biology/bowtie2/ && make install clean
To add the package: pkg install bowtie2
PKGNAME: bowtie2
Flavors: there is no flavor information for this port.

bwa Burrows-Wheeler sequence aligner
0.7.17 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-28 12:17:14
SVN Revision: 546721
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • bwa>0:biology/bwa
To install the port: cd /usr/ports/biology/bwa/ && make install clean
To add the package: pkg install bwa
PKGNAME: bwa
Flavors: there is no flavor information for this port.

canu Single molecule sequence assembler
2.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-09-14 23:27:37
SVN Revision: 548685
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • canu>0:biology/canu
To install the port: cd /usr/ports/biology/canu/ && make install clean
To add the package: pkg install canu
PKGNAME: canu
Flavors: there is no flavor information for this port.

cd-hit Clustering and comparing protein or nucleotide sequences
4.8.1_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • cd-hit>0:biology/cd-hit
To install the port: cd /usr/ports/biology/cd-hit/ && make install clean
To add the package: pkg install cd-hit
PKGNAME: cd-hit
Flavors: there is no flavor information for this port.

cdbfasta Fast indexing and retrieval of FASTA records from flat file databases
2010.07.22 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • cdbfasta>0:biology/cdbfasta
To install the port: cd /usr/ports/biology/cdbfasta/ && make install clean
To add the package: pkg install cdbfasta
PKGNAME: cdbfasta
Flavors: there is no flavor information for this port.

clustal-omega Multiple alignment of nucleic acid and protein, replaces clustalw
1.2.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-21 23:15:26
SVN Revision: 470582
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • clustal-omega>0:biology/clustal-omega
To install the port: cd /usr/ports/biology/clustal-omega/ && make install clean
To add the package: pkg install clustal-omega
PKGNAME: clustal-omega
Flavors: there is no flavor information for this port.

clustalw Multiple alignment program for DNA or proteins
2.1_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-21 02:13:40
SVN Revision: 470494
License: LGPL3
SVNWeb : Homepage
Dependency lines:
  • clustalw>0:biology/clustalw
To install the port: cd /usr/ports/biology/clustalw/ && make install clean
To add the package: pkg install clustalw
PKGNAME: clustalw
Flavors: there is no flavor information for this port.

ddocent Bash pipeline for RAD sequencing
2.7.8_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: MIT
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:biology/ddocent
To install the port: cd /usr/ports/biology/ddocent/ && make install clean
To add the package: pkg install dDocent
PKGNAME: dDocent
Flavors: there is no flavor information for this port.

fastahack Utility for indexing and sequence extraction from FASTA files
1.0.0 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-10-06 22:34:32
SVN Revision: 513910
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • fastahack>0:biology/fastahack
To install the port: cd /usr/ports/biology/fastahack/ && make install clean
To add the package: pkg install fastahack
PKGNAME: fastahack
Flavors: there is no flavor information for this port.

fastool Simple and quick FastQ and FastA tool for file reading and conversion
0.1.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • fastool>0:biology/fastool
To install the port: cd /usr/ports/biology/fastool/ && make install clean
To add the package: pkg install fastool
PKGNAME: fastool
Flavors: there is no flavor information for this port.

fastp Ultra-fast all-in-one FASTQ preprocessor
0.20.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-04-09 17:17:03
SVN Revision: 531215
License: MIT
SVNWeb : Homepage
Dependency lines:
  • fastp>0:biology/fastp
To install the port: cd /usr/ports/biology/fastp/ && make install clean
To add the package: pkg install fastp
PKGNAME: fastp
Flavors: there is no flavor information for this port.

fastqc Quality control tool for high throughput sequence data
0.11.8 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-21 03:44:54
SVN Revision: 512461
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • fastqc>0:biology/fastqc
To install the port: cd /usr/ports/biology/fastqc/ && make install clean
To add the package: pkg install fastqc
PKGNAME: fastqc
Flavors: there is no flavor information for this port.

fasttree Approximately-maximum-likelihood phylogenetic trees from alignments
2.1.10_4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv2+
SVNWeb : Homepage
Dependency lines:
  • FastTree>0:biology/fasttree
To install the port: cd /usr/ports/biology/fasttree/ && make install clean
To add the package: pkg install FastTree
PKGNAME: FastTree
Flavors: there is no flavor information for this port.

fastx-toolkit CLI tools for Short-Reads FASTA/FASTQ files preprocessing
0.0.14 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-16 16:13:43
SVN Revision: 470124
License: AGPLv3+
SVNWeb : Homepage
Dependency lines:
  • fastx_toolkit>0:biology/fastx-toolkit
To install the port: cd /usr/ports/biology/fastx-toolkit/ && make install clean
To add the package: pkg install fastx_toolkit
PKGNAME: fastx_toolkit
Flavors: there is no flavor information for this port.

freebayes Bayesian haplotype-based polymorphism discovery and genotyping
1.2.0_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-09-21 19:14:57
SVN Revision: 549476
License: MIT
SVNWeb : Homepage
Dependency lines:
  • freebayes>0:biology/freebayes
To install the port: cd /usr/ports/biology/freebayes/ && make install clean
To add the package: pkg install freebayes
PKGNAME: freebayes
Flavors: there is no flavor information for this port.

gcta Genome-wide Complex Trait Analysis
1.26.0_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-05-06 17:11:15
SVN Revision: 534185
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • gcta>0:biology/gcta
To install the port: cd /usr/ports/biology/gcta/ && make install clean
To add the package: pkg install gcta
PKGNAME: gcta
Flavors: there is no flavor information for this port.

gemma Genome-wide Efficient Mixed Model Association
0.98.1_5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-05-06 17:39:12
SVN Revision: 534190
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • gemma>0:biology/gemma
To install the port: cd /usr/ports/biology/gemma/ && make install clean
To add the package: pkg install gemma
PKGNAME: gemma
Flavors: there is no flavor information for this port.

gmap Genomic Mapping and Alignment Program for mRNA and EST Sequences
2020.09.12 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-10-09 14:23:13
SVN Revision: 551768
License: GMAP
SVNWeb : Homepage
Dependency lines:
  • gmap>0:biology/gmap
To install the port: cd /usr/ports/biology/gmap/ && make install clean
To add the package: pkg install gmap
PKGNAME: gmap
Flavors: there is no flavor information for this port.

hisat2 Alignment program for mapping next-generation sequencing reads
2.1.0.23 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-01-11 16:02:05
SVN Revision: 489981
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:biology/hisat2
To install the port: cd /usr/ports/biology/hisat2/ && make install clean
To add the package: pkg install hisat2
PKGNAME: hisat2
Flavors: there is no flavor information for this port.

htslib C library for high-throughput sequencing data formats
1.10.2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-03 18:40:04
SVN Revision: 544090
License: BSD3CLAUSE MIT
SVNWeb : Homepage
Dependency lines:
  • htslib>0:biology/htslib
To install the port: cd /usr/ports/biology/htslib/ && make install clean
To add the package: pkg install htslib
PKGNAME: htslib
Flavors: there is no flavor information for this port.

jellyfish Fast, memory-efficient counting of k-mers in DNA
2.2.10_9 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-03 18:40:04
SVN Revision: 544090
License: GPLv3+
SVNWeb : Homepage
Dependency lines:
  • Jellyfish>0:biology/jellyfish
To install the port: cd /usr/ports/biology/jellyfish/ && make install clean
To add the package: pkg install Jellyfish
PKGNAME: Jellyfish
Flavors: there is no flavor information for this port.

kallisto Quantify abundances of transcripts from RNA-Seq data
0.46.1,1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-03 16:45:22
SVN Revision: 544077
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • kallisto>0:biology/kallisto
To install the port: cd /usr/ports/biology/kallisto/ && make install clean
To add the package: pkg install kallisto
PKGNAME: kallisto
Flavors: there is no flavor information for this port.

libgtextutils Gordon's text utilities
0.7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-03-29 16:41:07
SVN Revision: 465904
License: AGPLv3
SVNWeb : Homepage
Dependency lines:
  • libgtextutils>0:biology/libgtextutils
To install the port: cd /usr/ports/biology/libgtextutils/ && make install clean
To add the package: pkg install libgtextutils
PKGNAME: libgtextutils
Flavors: there is no flavor information for this port.

minimap2 Pairwise aligner for genomic and spliced nucleotide sequences
2.17 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-05-05 15:56:07
SVN Revision: 500860
License: MIT
SVNWeb : Homepage
Dependency lines:
  • minimap2>0:biology/minimap2
To install the port: cd /usr/ports/biology/minimap2/ && make install clean
To add the package: pkg install minimap2
PKGNAME: minimap2
Flavors: there is no flavor information for this port.

ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool
2.10.0_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-30 04:10:24
SVN Revision: 546967
License: PD
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}blast+>0:biology/ncbi-blast+
To install the port: cd /usr/ports/biology/ncbi-blast+/ && make install clean
To add the package: pkg install ncbi-blast+
PKGNAME: ncbi-blast+
Flavors: there is no flavor information for this port.

p5-TrimGalore Wrapper around Cutadapt and FastQC for adapter and quality trimming
0.6.5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-11-26 16:20:12
SVN Revision: 518469
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}TrimGalore>0:biology/p5-TrimGalore
To install the port: cd /usr/ports/biology/p5-TrimGalore/ && make install clean
To add the package: pkg install p5-TrimGalore
PKGNAME: p5-TrimGalore
Flavors: there is no flavor information for this port.

p5-transdecoder Identify candidate coding regions within transcript sequences
5.4.0_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • p5-transdecoder>0:biology/p5-transdecoder
To install the port: cd /usr/ports/biology/p5-transdecoder/ && make install clean
To add the package: pkg install p5-transdecoder
PKGNAME: p5-transdecoder
Flavors: there is no flavor information for this port.

pear-merger Memory-efficient and highly accurate paired-end read merger
0.9.6 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-06-22 00:52:37
SVN Revision: 473009
License: CC-BY-NC-SA-3.0
SVNWeb : Homepage
Dependency lines:
  • pear-merger>0:biology/pear-merger
To install the port: cd /usr/ports/biology/pear-merger/ && make install clean
To add the package: pkg install pear-merger
PKGNAME: pear-merger
Flavors: there is no flavor information for this port.

picard-tools CLI tools for manipulating high-throughput sequencing (HTS) data
2.22.9 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-30 15:06:54
SVN Revision: 547056
License: MIT
SVNWeb : Homepage
Dependency lines:
  • picard-tools>0:biology/picard-tools
To install the port: cd /usr/ports/biology/picard-tools/ && make install clean
To add the package: pkg install picard-tools
PKGNAME: picard-tools
Flavors: there is no flavor information for this port.

py-cutadapt Trim adapters from high-throughput sequencing reads
2.7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-11-23 14:45:53
SVN Revision: 518242
License: MIT
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}cutadapt>0:biology/py-cutadapt
To install the port: cd /usr/ports/biology/py-cutadapt/ && make install clean
To add the package: pkg install py36-cutadapt
PKGNAME: py36-cutadapt
Package flavors (<flavor>: <package>)
  • py36: py36-cutadapt

py-dnaio Read and write FASTQ and FASTA
0.4.2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-05-24 16:23:15
SVN Revision: 536409
License: MIT
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}dnaio>0:biology/py-dnaio
To install the port: cd /usr/ports/biology/py-dnaio/ && make install clean
To add the package: pkg install py37-dnaio
PKGNAME: py37-dnaio
Package flavors (<flavor>: <package>)
  • py37: py37-dnaio

py-macs2 Identify transcription factor binding sites
2.2.7.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-04-14 13:13:55
SVN Revision: 531674
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2
To install the port: cd /usr/ports/biology/py-macs2/ && make install clean
To add the package: pkg install py37-macs2
PKGNAME: py37-macs2
Package flavors (<flavor>: <package>)
  • py37: py37-macs2

py-multiqc Aggregate bioinformatics analysis reports across samples and tools
1.8 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-09-19 15:15:43
SVN Revision: 548989
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc
To install the port: cd /usr/ports/biology/py-multiqc/ && make install clean
To add the package: pkg install py37-multiqc
PKGNAME: py37-multiqc
Package flavors (<flavor>: <package>)
  • py37: py37-multiqc

rainbow Efficient clustering and assembling of short reads, especially for RAD
2.0.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-04-01 00:18:10
SVN Revision: 530167
License: GPLv3+
SVNWeb : Homepage
Dependency lines:
  • rainbow>0:biology/rainbow
To install the port: cd /usr/ports/biology/rainbow/ && make install clean
To add the package: pkg install rainbow
PKGNAME: rainbow
Flavors: there is no flavor information for this port.

samtools Tools for manipulating next-generation sequencing data
1.10 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-03 19:22:06
SVN Revision: 544098
License: MIT
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:biology/samtools
To install the port: cd /usr/ports/biology/samtools/ && make install clean
To add the package: pkg install samtools
PKGNAME: samtools
Flavors: there is no flavor information for this port.

seqtk Tool for processing sequences in FASTA/FASTQ format
1.2.8 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-03 21:57:05
SVN Revision: 466379
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • seqtk>0:biology/seqtk
To install the port: cd /usr/ports/biology/seqtk/ && make install clean
To add the package: pkg install seqtk
PKGNAME: seqtk
Flavors: there is no flavor information for this port.

slclust Single-linkage clustering with Jaccard similarity
2010.02.02 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: ART10
SVNWeb : Homepage
Dependency lines:
  • slclust>0:biology/slclust
To install the port: cd /usr/ports/biology/slclust/ && make install clean
To add the package: pkg install slclust
PKGNAME: slclust
Flavors: there is no flavor information for this port.

smithwaterman Smith-waterman-gotoh alignment algorithm
g20160702 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-15 18:45:52
SVN Revision: 467402
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • smithwaterman>0:biology/smithwaterman
To install the port: cd /usr/ports/biology/smithwaterman/ && make install clean
To add the package: pkg install smithwaterman
PKGNAME: smithwaterman
Flavors: there is no flavor information for this port.

stacks Software pipeline for building loci from short-read sequences
2.4_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:biology/stacks
To install the port: cd /usr/ports/biology/stacks/ && make install clean
To add the package: pkg install stacks
PKGNAME: stacks
Flavors: there is no flavor information for this port.

star Spliced Transcripts Alignment to a Reference
2.7.3.a biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-04-09 13:43:03
SVN Revision: 531206
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • rna-STAR>0:biology/star
To install the port: cd /usr/ports/biology/star/ && make install clean
To add the package: pkg install rna-STAR
PKGNAME: rna-STAR
Flavors: there is no flavor information for this port.

subread High-performance read alignment, quantification and mutation discovery
2.0.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-09-18 01:57:36
SVN Revision: 548871
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • subread>0:biology/subread
To install the port: cd /usr/ports/biology/subread/ && make install clean
To add the package: pkg install subread
PKGNAME: subread
Flavors: there is no flavor information for this port.

tabixpp C++ wrapper to tabix indexer
1.0.0.10_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-03 18:40:04
SVN Revision: 544090
License: MIT
SVNWeb : Homepage
Dependency lines:
  • tabixpp>0:biology/tabixpp
To install the port: cd /usr/ports/biology/tabixpp/ && make install clean
To add the package: pkg install tabixpp
PKGNAME: tabixpp
Flavors: there is no flavor information for this port.

trimadap Trim adapter sequences from Illumina data using heuristic rules
0.1.3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-05-11 01:18:24
SVN Revision: 501207
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • trimadap>0:biology/trimadap
To install the port: cd /usr/ports/biology/trimadap/ && make install clean
To add the package: pkg install trimadap
PKGNAME: trimadap
Flavors: there is no flavor information for this port.

trimmomatic Flexible read trimming tool for Illumina NGS data
0.39 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-11-26 21:46:13
SVN Revision: 518482
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • trimmomatic>0:biology/trimmomatic
To install the port: cd /usr/ports/biology/trimmomatic/ && make install clean
To add the package: pkg install trimmomatic
PKGNAME: trimmomatic
Flavors: there is no flavor information for this port.

vcflib C++ library and CLI tools for parsing and manipulating VCF files
1.0.0.r1.130_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-03 18:40:04
SVN Revision: 544090
License: MIT
SVNWeb : Homepage
Dependency lines:
  • vcflib>0:biology/vcflib
To install the port: cd /usr/ports/biology/vcflib/ && make install clean
To add the package: pkg install vcflib
PKGNAME: vcflib
Flavors: there is no flavor information for this port.

vcftools Tools for working with VCF genomics files
0.1.16 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-08-04 02:29:29
SVN Revision: 476330
License: LGPL3
SVNWeb : Homepage
Dependency lines:
  • vcftools>0:biology/vcftools
To install the port: cd /usr/ports/biology/vcftools/ && make install clean
To add the package: pkg install vcftools
PKGNAME: vcftools
Flavors: there is no flavor information for this port.

vsearch Versatile open-source tool for metagenomics
2.15.0 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-06-20 15:31:59
SVN Revision: 539742
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • vsearch>0:biology/vsearch
To install the port: cd /usr/ports/biology/vsearch/ && make install clean
To add the package: pkg install vsearch
PKGNAME: vsearch
Flavors: there is no flavor information for this port.

vt Discovers short variants from Next Generation Sequencing data
0.57721_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-03 18:42:32
SVN Revision: 544091
License: MIT
SVNWeb : Homepage
Dependency lines:
  • vt>0:biology/vt
To install the port: cd /usr/ports/biology/vt/ && make install clean
To add the package: pkg install vt
PKGNAME: vt
Flavors: there is no flavor information for this port.

cutecom Graphical serial terminal for embedded programming
0.51.0_1 comms search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-05-19 19:06:11
SVN Revision: 535877

People watching this port, also watch: tmux, coreutils, python, monit, irc

License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • cutecom>0:comms/cutecom
To install the port: cd /usr/ports/comms/cutecom/ && make install clean
To add the package: pkg install cutecom
PKGNAME: cutecom
Flavors: there is no flavor information for this port.

R-cran-getopt Accept short and long flags in Rscript
1.20.3_1 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-05-05 17:07:54
SVN Revision: 534095
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • R-cran-getopt>0:devel/R-cran-getopt
To install the port: cd /usr/ports/devel/R-cran-getopt/ && make install clean
To add the package: pkg install R-cran-getopt
PKGNAME: R-cran-getopt
Flavors: there is no flavor information for this port.

R-cran-optparse Command line flag parser inspired by Python's optparse
1.6.6 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-05-24 16:20:42
SVN Revision: 536407
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • R-cran-optparse>0:devel/R-cran-optparse
To install the port: cd /usr/ports/devel/R-cran-optparse/ && make install clean
To add the package: pkg install R-cran-optparse
PKGNAME: R-cran-optparse
Flavors: there is no flavor information for this port.

libgamepad Generic gamepad API
0.1.2 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb
Dependency lines:
  • libgamepad>0:devel/libgamepad
To install the port: cd /usr/ports/devel/libgamepad/ && make install clean
To add the package: pkg install libgamepad
PKGNAME: libgamepad
Flavors: there is no flavor information for this port.

lnphost Lego RCX iinfrared communication API
1.0a devel search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • lnphost>0:devel/lnphost
To install the port: cd /usr/ports/devel/lnphost/ && make install clean
To add the package: pkg install lnphost
PKGNAME: lnphost
Flavors: there is no flavor information for this port.

py-srsly Modern high-performance serialization utilities for Python
2.1.0 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-07-03 22:15:29
SVN Revision: 541135
License: MIT
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}srsly>0:devel/py-srsly
To install the port: cd /usr/ports/devel/py-srsly/ && make install clean
To add the package: pkg install py37-srsly
PKGNAME: py37-srsly
Package flavors (<flavor>: <package>)
  • py37: py37-srsly

roboctl API and tools for communicating with Lego and Vex robots
0.3.8 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • roboctl>0:devel/roboctl
To install the port: cd /usr/ports/devel/roboctl/ && make install clean
To add the package: pkg install roboctl
PKGNAME: roboctl
Flavors: there is no flavor information for this port.

yaggo Generate command line parser using getopt_long
1.5.9 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • yaggo>0:devel/yaggo
To install the port: cd /usr/ports/devel/yaggo/ && make install clean
To add the package: pkg install yaggo
PKGNAME: yaggo
Flavors: there is no flavor information for this port.

py-spectra Color scales and color conversion made easy for Python
0.0.11 graphics search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-22 16:54:33
SVN Revision: 512590
License: MIT
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}spectra>0:graphics/py-spectra
To install the port: cd /usr/ports/graphics/py-spectra/ && make install clean
To add the package: pkg install py36-spectra
PKGNAME: py36-spectra
Package flavors (<flavor>: <package>)
  • py36: py36-spectra
  • py27: py27-spectra

intervaltree Minimal C++ interval tree implementation
g20151213_2 math search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: MIT
SVNWeb : Homepage
Dependency lines:
  • intervaltree>0:math/intervaltree
To install the port: cd /usr/ports/math/intervaltree/ && make install clean
To add the package: pkg install intervaltree
PKGNAME: intervaltree
Flavors: there is no flavor information for this port.

matlab-installer Easy installation of Linux Matlab(r) on FreeBSD
0.2_4 math search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-11-26 21:46:13
SVN Revision: 518482
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • matlab-installer>0:math/matlab-installer
To install the port: cd /usr/ports/math/matlab-installer/ && make install clean
To add the package: pkg install matlab-installer
PKGNAME: matlab-installer
Flavors: there is no flavor information for this port.

multichoose Generate multiset combinations (n multichoose k)
1.0.3.2 math search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-16 19:31:42
SVN Revision: 467502
License: MIT
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}>0:math/multichoose
To install the port: cd /usr/ports/math/multichoose/ && make install clean
To add the package: pkg install multichoose
PKGNAME: multichoose
Flavors: there is no flavor information for this port.

rapid Robust and Accurate Polygon Interference Detection
2.01 math search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-13 23:29:43
SVN Revision: 508882
License: UNKNOWN
SVNWeb : Homepage
Dependency lines:
  • rapid>0:math/rapid
To install the port: cd /usr/ports/math/rapid/ && make install clean
To add the package: pkg install rapid
PKGNAME: rapid
Flavors: there is no flavor information for this port.

genplist Generates a static plist for a port
1.2 ports-mgmt search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452

People watching this port, also watch: libdrm, sudo, postfix, xdg-utils, p5-MIME-Tools

License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • genplist>0:ports-mgmt/genplist
To install the port: cd /usr/ports/ports-mgmt/genplist/ && make install clean
To add the package: pkg install genplist
PKGNAME: genplist
Flavors: there is no flavor information for this port.

dlpoly-classic Molecular dynamics simulation package
1.8_19 science search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: MASTERSITE gone; possibly replaced by https://gitlab.com/DL_POLY_Classic/dl_poly?
Expiration Date EXPIRATION DATE: 2021-01-14
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-10-14 21:38:48
SVN Revision: 552355
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • dlpolyclassic>0:science/dlpoly-classic
To install the port: cd /usr/ports/science/dlpoly-classic/ && make install clean
To add the package: pkg install dlpolyclassic
PKGNAME: dlpolyclassic
Flavors: there is no flavor information for this port.

fsom Tiny C library for managing SOM (Self-Organizing Maps) neural networks
g20151117_2 science search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • fsom>0:science/fsom
To install the port: cd /usr/ports/science/fsom/ && make install clean
To add the package: pkg install fsom
PKGNAME: fsom
Flavors: there is no flavor information for this port.

fvcom Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_16 science search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-31 18:11:57
SVN Revision: 510405
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • fvcom>0:science/fvcom
To install the port: cd /usr/ports/science/fvcom/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: fvcom
Flavors: there is no flavor information for this port.

fvcom-mpi Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_15 science search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch. NOTE: Slave port - quarterly revision is most likely wrong.
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-04-19 10:49:02
SVN Revision: 532095
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • fvcom-openmpi>0:science/fvcom-mpi
To install the port: cd /usr/ports/science/fvcom-mpi/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: fvcom-openmpi
Flavors: there is no flavor information for this port.

nifticlib Neuroimaging Informatics Technology Initiative data format
2.0.0_1 science search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-06-08 20:24:18
SVN Revision: 503748
License: PD
SVNWeb : Homepage
Dependency lines:
  • nifticlib>0:science/nifticlib
To install the port: cd /usr/ports/science/nifticlib/ && make install clean
To add the package: pkg install nifticlib
PKGNAME: nifticlib
Flavors: there is no flavor information for this port.

openkim Knowledgebase of Interatomic Models
1.1.1_10 science search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: CDDL
SVNWeb : Homepage
Dependency lines:
  • openkim>0:science/openkim
To install the port: cd /usr/ports/science/openkim/ && make install clean
To add the package: pkg install openkim
PKGNAME: openkim
Flavors: there is no flavor information for this port.

packmol Pack molecules in defined regions of space
18.169 science search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-22 20:06:44
SVN Revision: 512600
License: MIT
SVNWeb : Homepage
Dependency lines:
  • packmol>0:science/packmol
To install the port: cd /usr/ports/science/packmol/ && make install clean
To add the package: pkg install packmol
PKGNAME: packmol
Flavors: there is no flavor information for this port.

voro++ Three-dimensional computations of the Voronoi tessellation
0.4.6_1 science search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-11-04 15:52:43
SVN Revision: 484101
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • voro++>0:science/voro++
To install the port: cd /usr/ports/science/voro++/ && make install clean
To add the package: pkg install voro++
PKGNAME: voro++
Flavors: there is no flavor information for this port.

auto-admin Portable tools for automating systems management
0.6.7 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-08-11 16:01:53
SVN Revision: 544687

People watching this port, also watch: coreutils, tmux, tcpdump, mkvtoolnix, zip

License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • auto-admin>0:sysutils/auto-admin
To install the port: cd /usr/ports/sysutils/auto-admin/ && make install clean
To add the package: pkg install auto-admin
PKGNAME: auto-admin
Flavors: there is no flavor information for this port.

desktop-installer Quickly configure a FreeBSD desktop system
0.6.17 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-07-19 17:09:52
SVN Revision: 542587

People watching this port, also watch: wtf, hplip, mkvtoolnix, atop, lnav

License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • desktop-installer>0:sysutils/desktop-installer
To install the port: cd /usr/ports/sysutils/desktop-installer/ && make install clean
To add the package: pkg install desktop-installer
PKGNAME: desktop-installer
Flavors: there is no flavor information for this port.

diskimage-tools Convenience tools for manipulating disk images
0.2 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-03-01 02:25:59
SVN Revision: 463277
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • diskimage-tools>0:sysutils/diskimage-tools
To install the port: cd /usr/ports/sysutils/diskimage-tools/ && make install clean
To add the package: pkg install diskimage-tools
PKGNAME: diskimage-tools
Flavors: there is no flavor information for this port.

endian Report endianness of a system
1.1 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb
Dependency lines:
  • endian>0:sysutils/endian
To install the port: cd /usr/ports/sysutils/endian/ && make install clean
To add the package: pkg install endian
PKGNAME: endian
Flavors: there is no flavor information for this port.

filevercmp Compare version strings as in sort --version-sort
g20151117 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-16 17:21:32
SVN Revision: 467487
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • filevercmp>0:sysutils/filevercmp
To install the port: cd /usr/ports/sysutils/filevercmp/ && make install clean
To add the package: pkg install filevercmp
PKGNAME: filevercmp
Flavors: there is no flavor information for this port.

ganglia-monitor-core Ganglia cluster monitor, monitoring daemon
3.7.2 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-10-01 19:00:57
SVN Revision: 550854

People watching this port, also watch: ganglia-webfrontend, sudo, postfix, bsdstats, monit

License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • ganglia-monitor-core>0:sysutils/ganglia-monitor-core
To install the port: cd /usr/ports/sysutils/ganglia-monitor-core/ && make install clean
To add the package: pkg install ganglia-monitor-core
PKGNAME: ganglia-monitor-core
Flavors: there is no flavor information for this port.

ganglia-webfrontend Ganglia cluster monitor, web frontend
3.7.2_2 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-14 13:16:13
SVN Revision: 508909

People watching this port, also watch: ganglia-monitor-core, postfix, sleuthkit, coreutils, monit

License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • ganglia-webfrontend>0:sysutils/ganglia-webfrontend
To install the port: cd /usr/ports/sysutils/ganglia-webfrontend/ && make install clean
To add the package: pkg install ganglia-webfrontend
PKGNAME: ganglia-webfrontend
Flavors: there is no flavor information for this port.

mcweject Removable media eject
1.1 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-14 13:16:13
SVN Revision: 508909

People watching this port, also watch: python, gnome-vfs, sysinfo

License: BSD3CLAUSE
SVNWeb
Dependency lines:
  • mcweject>0:sysutils/mcweject
To install the port: cd /usr/ports/sysutils/mcweject/ && make install clean
To add the package: pkg install mcweject
PKGNAME: mcweject
Flavors: there is no flavor information for this port.

parafly Process multiple commands in parallel on a single server
2013.01.21_7 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372

People watching this port, also watch: python, unoconv, py37-pycparser, sysinfo

License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • parafly>0:sysutils/parafly
To install the port: cd /usr/ports/sysutils/parafly/ && make install clean
To add the package: pkg install parafly
PKGNAME: parafly
Flavors: there is no flavor information for this port.

slurm-wlm Simple Linux Utility for Resource Management
20.02.1_2 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2020-09-20 20:50:57
SVN Revision: 549389

People watching this port, also watch: libkvkontakte, xerces-c3, py37-pycparser, linux-c7-avahi-libs, python

License: GPLv2+
SVNWeb : Homepage
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}wlm>0:sysutils/slurm-wlm
To install the port: cd /usr/ports/sysutils/slurm-wlm/ && make install clean
To add the package: pkg install slurm-wlm
PKGNAME: slurm-wlm
Flavors: there is no flavor information for this port.

webbrowser Wrapper for running the "best" available WEB browser
0.3 www search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452

People watching this port, also watch: python, unoconv, py37-pycparser, sysinfo

License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • webbrowser>0:www/webbrowser
To install the port: cd /usr/ports/www/webbrowser/ && make install clean
To add the package: pkg install webbrowser
PKGNAME: webbrowser
Flavors: there is no flavor information for this port.

lilyterm Lightweight, but functional terminal emulator
0.9.9.4_1 x11 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-11-07 18:36:56
SVN Revision: 517000
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • lilyterm>0:x11/lilyterm
To install the port: cd /usr/ports/x11/lilyterm/ && make install clean
To add the package: pkg install lilyterm
PKGNAME: lilyterm
Flavors: there is no flavor information for this port.

Number of ports: 90
Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
freetype2Oct 22
chromiumOct 21
mysql56-serverOct 21
mysql57-serverOct 21
mysql80-serverOct 21
mariadb103-clientOct 18
mariadb103-serverOct 18
mariadb104-clientOct 18
mariadb104-serverOct 18
mariadb105-clientOct 18
mariadb105-serverOct 18
drupal7Oct 17
py-matrix-synapseOct 17
powerdns-recursorOct 14
linux-flashplayerOct 13

9 vulnerabilities affecting 118 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2020-10-22 09:39:08


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 41214
Broken 57
Deprecated 272
Ignore 296
Forbidden 4
Restricted 146
No CDROM 73
Vulnerable 20
Expired 10
Set to expire 243
Interactive 0
new 24 hours 6
new 48 hours10
new 7 days87
new fortnight110
new month203

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2020 Dan Langille. All rights reserved.