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Number of ports: 80
py-xopen Open compressed files transparently
0.3.5 archivers search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-07 14:41:19
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/archivers/py-xopen/ && make install clean
To add the package: pkg install py27-xopen

PKGNAME: py27-xopen

distinfo:

TIMESTAMP = 1530899151
SHA256 (xopen-0.3.5.tar.gz) = 3a418d5d3eacc6645d8f002635308651bb6e47b9cabb19ae3abad600aa117ce3
SIZE (xopen-0.3.5.tar.gz) = 4736

praat Phonetics by Computer
5.4.08_3 audio search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/audio/praat/ && make install clean
To add the package: pkg install praat

PKGNAME: praat

distinfo:

SHA256 (praat-praat-v5.4.08_GH0.tar.gz) = 820f6c6e43a46c565778c2494fef6de3b0c5100e78ae5e2979194619c332e165
SIZE (praat-praat-v5.4.08_GH0.tar.gz) = 6973960

bamtools API and toolkit for handling BAM files
2.5.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-03-28 14:26:31
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/bamtools/ && make install clean
To add the package: pkg install bamtools

PKGNAME: bamtools

distinfo:

TIMESTAMP = 1520126058
SHA256 (pezmaster31-bamtools-v2.5.1_GH0.tar.gz) = 4abd76cbe1ca89d51abc26bf43a92359e5677f34a8258b901a01f38c897873fc
SIZE (pezmaster31-bamtools-v2.5.1_GH0.tar.gz) = 549750

bedtools Toolset for genome set arithmetic such as intersect, union
2.27.1_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-16 18:55:02
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/bedtools/ && make install clean
To add the package: pkg install bedtools

PKGNAME: bedtools

distinfo:

TIMESTAMP = 1519746174
SHA256 (arq5x-bedtools2-v2.27.1_GH0.tar.gz) = edcac089d84e63a51f85c3c189469daa7d42180272130b046856faad3cf79112
SIZE (arq5x-bedtools2-v2.27.1_GH0.tar.gz) = 20003119

bowtie Ultrafast, memory-efficient short read aligner
1.1.2_6 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: ART10
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/bowtie/ && make install clean
To add the package: pkg install bowtie

PKGNAME: bowtie

distinfo:

SHA256 (BenLangmead-bowtie-v1.1.2_GH0.tar.gz) = 717145f12d599e9b3672981f5444fbbdb8e02bfde2a80eba577e28baa4125ba7
SIZE (BenLangmead-bowtie-v1.1.2_GH0.tar.gz) = 7831346

bowtie2 Ultrafast, memory-efficient short read aligner
2.3.3.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-11-30 02:59:16
License: GPLv3+
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/bowtie2/ && make install clean
To add the package: pkg install bowtie2

PKGNAME: bowtie2

distinfo:

TIMESTAMP = 1511991430
SHA256 (BenLangmead-bowtie2-v2.3.3.1_GH0.tar.gz) = 8b9c0b9c595ebcddcac5feaf6acb44b2294d6deb91de107596ecad242a1a58e9
SIZE (BenLangmead-bowtie2-v2.3.3.1_GH0.tar.gz) = 5796279

bwa Burrows-Wheeler sequence aligner
0.7.17 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/bwa/ && make install clean
To add the package: pkg install bwa

PKGNAME: bwa

distinfo:

TIMESTAMP = 1511844744
SHA256 (lh3-bwa-v0.7.17_GH0.tar.gz) = 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd
SIZE (lh3-bwa-v0.7.17_GH0.tar.gz) = 232593

canu Single molecule sequence assembler
1.7_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-08-09 07:58:31
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/canu/ && make install clean
To add the package: pkg install canu

PKGNAME: canu

distinfo:

TIMESTAMP = 1524325169
SHA256 (marbl-canu-v1.7_GH0.tar.gz) = c5be54b0ad20729093413e7e722a19637d32e966dc8ecd2b579ba3e4958d378a
SIZE (marbl-canu-v1.7_GH0.tar.gz) = 2533016

cd-hit Clustering and comparing protein or nucleotide sequences
4.6.6_4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/cd-hit/ && make install clean
To add the package: pkg install cd-hit

PKGNAME: cd-hit

distinfo:

TIMESTAMP = 1482076217
SHA256 (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = a0c89c969ad338f958620083b12bc69fa30fcba8246a7ec0b6243e5b2ba0365d
SIZE (weizhongli-cdhit-V4.6.6_GH0.tar.gz) = 1149112

cdbfasta Fast indexing and retrieval of FASTA records from flat file databases
2010.07.22 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/cdbfasta/ && make install clean
To add the package: pkg install cdbfasta

PKGNAME: cdbfasta

distinfo:

SHA256 (cdbfasta-2010.07.22.tar.gz) = 68767e8b2fb9de5a6d68ee16df73293f65e02f05cf2f747a9dd6b8854766722c
SIZE (cdbfasta-2010.07.22.tar.gz) = 59735

clustal-omega Multiple alignment of nucleic acid and protein, replaces clustalw
1.2.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-05-21 23:15:26
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/clustal-omega/ && make install clean
To add the package: pkg install clustal-omega

PKGNAME: clustal-omega

distinfo:

TIMESTAMP = 1526846209
SHA256 (clustal-omega-1.2.4.tar.gz) = 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee
SIZE (clustal-omega-1.2.4.tar.gz) = 1170516

clustalw Multiple alignment program for DNA or proteins
2.1_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-05-21 02:13:40
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/clustalw/ && make install clean
To add the package: pkg install clustalw

PKGNAME: clustalw

distinfo:

SHA256 (clustalw-2.1.tar.gz) = e052059b87abfd8c9e695c280bfba86a65899138c82abccd5b00478a80f49486
SIZE (clustalw-2.1.tar.gz) = 350761

clustalx Multiple alignment of nucleic acid and protein sequences with GUI
2.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-28 18:39:55
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/clustalx/ && make install clean
To add the package: pkg install clustalx

PKGNAME: clustalx

distinfo:

TIMESTAMP = 1526839706
SHA256 (clustalx-2.1.tar.gz) = e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05
SIZE (clustalx-2.1.tar.gz) = 341649

ddocent Bash pipeline for RAD sequencing
2.2.25 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-20 02:34:05
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/ddocent/ && make install clean
To add the package: pkg install dDocent

PKGNAME: dDocent

distinfo:

TIMESTAMP = 1520345850
SHA256 (jpuritz-dDocent-v2.2.25_GH0.tar.gz) = 903c3010b29b2ca95f7fe6099925948e4d3f21655668caff653df97dfa7ecf44
SIZE (jpuritz-dDocent-v2.2.25_GH0.tar.gz) = 336804

fastahack Utility for indexing and sequence extraction from FASTA files
g20160702 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-16 15:50:46
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/fastahack/ && make install clean
To add the package: pkg install fastahack

PKGNAME: fastahack

distinfo:

TIMESTAMP = 1523600462
SHA256 (ekg-fastahack-g20160702-bbc645f2f7966cb7b44446200c02627c3168b399_GH0.tar.gz) = dc8ef61765b7720fd2d163143696f1c82251bfd906ac5261642e7230d81d5da6
SIZE (ekg-fastahack-g20160702-bbc645f2f7966cb7b44446200c02627c3168b399_GH0.tar.gz) = 18200

fastool Simple and quick FastQ and FastA tool for file reading and conversion
0.1.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/fastool/ && make install clean
To add the package: pkg install fastool

PKGNAME: fastool

distinfo:

SHA256 (fstrozzi-Fastool-0.1.4_GH0.tar.gz) = f86f02fced9479b77d6d27a442b66e66f0c55d40d5ad2ddd91a752de57024540
SIZE (fstrozzi-Fastool-0.1.4_GH0.tar.gz) = 6346

fastqc Quality control tool for high throughput sequence data
0.11.5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-11-30 22:54:29
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/fastqc/ && make install clean
To add the package: pkg install fastqc

PKGNAME: fastqc

distinfo:

TIMESTAMP = 1509737655
SHA256 (fastqc_v0.11.5.zip) = dd7a5ad80ceed2588cf6d6ffe35e0f161c0d9977ed08355f5e4d9473282cbd66
SIZE (fastqc_v0.11.5.zip) = 10026429

fasttree Approximately-maximum-likelihood phylogenetic trees from alignments
2.1.10_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: GPLv2+
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/fasttree/ && make install clean
To add the package: pkg install FastTree

PKGNAME: FastTree

distinfo:

TIMESTAMP = 1512317739
SHA256 (FastTree-2.1.10.c) = 54cb89fc1728a974a59eae7a7ee6309cdd3cddda9a4c55b700a71219fc6e926d
SIZE (FastTree-2.1.10.c) = 390916

fastx-toolkit CLI tools for Short-Reads FASTA/FASTQ files preprocessing
0.0.14 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-05-16 16:13:43
License: AGPLv3+
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/fastx-toolkit/ && make install clean
To add the package: pkg install fastx_toolkit

PKGNAME: fastx_toolkit

distinfo:

SHA256 (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa
SIZE (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = 259576

freebayes Bayesian haplotype-based polymorphism discovery and genotyping
1.2.0 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-22 00:52:37
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/freebayes/ && make install clean
To add the package: pkg install freebayes

PKGNAME: freebayes

distinfo:

TIMESTAMP = 1523932688
SHA256 (ekg-freebayes-v1.2.0_GH0.tar.gz) = a5626636112966cac87095365986722d1c871759f03c5a143646da65c416ba8a
SIZE (ekg-freebayes-v1.2.0_GH0.tar.gz) = 2639725
SHA256 (walaj-SeqLib-5941c68_GH0.tar.gz) = 0ac2b63f5fd7b1cec20a18ebb6799bf1f9b88d6c7cd95f7dd7410b1b82c8703f
SIZE (walaj-SeqLib-5941c68_GH0.tar.gz) = 314968
SHA256 (jwalabroad-bwa-c02766e_GH0.tar.gz) = cce547db0efef8572d63b47d2065f07e36f770fc8a6f15f5cd03d6fa9ab9b1f7
SIZE (jwalabroad-bwa-c02766e_GH0.tar.gz) = 205546
SHA256 (jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz) = 2b3b9b637f48dc3239618efd6b55183eef6b6232013c217eb1c319f1dd3da224
SIZE (jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz) = 248454
SHA256 (samtools-htslib-49fdfbd_GH0.tar.gz) = 0bc9c7d48e2a439badf5990113ae3e4de9acd05e4c090938236ee40588d115b9
SIZE (samtools-htslib-49fdfbd_GH0.tar.gz) = 1145082
SHA256 (ekg-bamtools-e77a43f_GH0.tar.gz) = d3a143636ccedcc54417a2d6d88dd726c7d2c046318620b88c7ba2fb30b01419
SIZE (ekg-bamtools-e77a43f_GH0.tar.gz) = 540118
SHA256 (ekg-intervaltree-dbb4c51_GH0.tar.gz) = 1f3ba92a83cb782cf22dfb383b8c93c11c1c88e0b2e5fa434e24668260ecd1f8
SIZE (ekg-intervaltree-dbb4c51_GH0.tar.gz) = 3780
SHA256 (vcflib-vcflib-5e3ce04_GH0.tar.gz) = d084c1df7bb0004df18e013da3cbf896b642d853c855aea58ae029abe1d2097a
SIZE (vcflib-vcflib-5e3ce04_GH0.tar.gz) = 20119782
SHA256 (ekg-fastahack-c68cebb_GH0.tar.gz) = c6f7186bbe733ff78c25b2afd7e7ba79daa3ecd14a5876ea0b033a43744c876d
SIZE (ekg-fastahack-c68cebb_GH0.tar.gz) = 17312
SHA256 (ekg-filevercmp-1a9b779_GH0.tar.gz) = 34c21d1b58295bca72b92c1cd832a4171b07ec97c19ffc0d4d8ec67e266c6070
SIZE (ekg-filevercmp-1a9b779_GH0.tar.gz) = 3053
SHA256 (ekg-fsom-a6ef318_GH0.tar.gz) = 68351c16d5c4b96142409e38c6828b6199eae44eaa7579bde165734d4832565b
SIZE (ekg-fsom-a6ef318_GH0.tar.gz) = 9686
SHA256 (google-googletest-d225acc_GH0.tar.gz) = 6880e0d51fa80a508ad5674ce483c1c468315faddac10d580b5505e8e7ef6bfa
SIZE (google-googletest-d225acc_GH0.tar.gz) = 1279815
SHA256 (ekg-intervaltree-b704f19_GH0.tar.gz) = 7e38b5f5873790afbcfdf6adbb621cdf4a1d9f22e28934a8edfe62cd65918f0d
SIZE (ekg-intervaltree-b704f19_GH0.tar.gz) = 3768
SHA256 (ekg-multichoose-73d35da_GH0.tar.gz) = af52475d7568863ad8173aebfb6b8b87690118bad8945876b629a2b3c05577cf
SIZE (ekg-multichoose-73d35da_GH0.tar.gz) = 4697
SHA256 (ekg-smithwaterman-84c08d7_GH0.tar.gz) = 299c9e28e50977642d1538f8940852976b6db3241619eb1f40b78484b1cde58e
SIZE (ekg-smithwaterman-84c08d7_GH0.tar.gz) = 38382
SHA256 (ekg-tabixpp-80012f8_GH0.tar.gz) = 6aecc865673776bec4e2ddb14e629a4798ad36bf8f7639968812a6262675fb3f
SIZE (ekg-tabixpp-80012f8_GH0.tar.gz) = 3530
SHA256 (samtools-htslib-0f298ce_GH0.tar.gz) = 829bb54383745fb923ed5d8dabbb6aa8b5d9501601c7a4163276d86aca1196ee
SIZE (samtools-htslib-0f298ce_GH0.tar.gz) = 1065854

gmap Genomic Mapping and Alignment Program for mRNA and EST Sequences
2015.09.21 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GMAP
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/gmap/ && make install clean
To add the package: pkg install gmap

PKGNAME: gmap

distinfo:

SHA256 (gmap-gsnap-2015-09-21.tar.gz) = af78237ee9b90ba4416872b3509536060749c3622bbcaadec10e2dcc01301d9c
SIZE (gmap-gsnap-2015-09-21.tar.gz) = 4168019

jellyfish Fast, memory-efficient counting of k-mers in DNA
2.2.6_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: GPLv3+
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/jellyfish/ && make install clean
To add the package: pkg install jellyfish

PKGNAME: jellyfish

distinfo:

TIMESTAMP = 1482069678
SHA256 (gmarcais-Jellyfish-v2.2.6_GH0.tar.gz) = 800bc60aaec273dc04296ee7493e714457f2fe88551f76693e5d9f9a679dd35e
SIZE (gmarcais-Jellyfish-v2.2.6_GH0.tar.gz) = 660858

kallisto Quantify abundances of transcripts from RNA-Seq data
0.43.1_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/kallisto/ && make install clean
To add the package: pkg install kallisto

PKGNAME: kallisto

distinfo:

TIMESTAMP = 1512166931
SHA256 (pachterlab-kallisto-v0.43.1_GH0.tar.gz) = 2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e
SIZE (pachterlab-kallisto-v0.43.1_GH0.tar.gz) = 1067076

libgtextutils Gordon's text utilities
0.7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-03-29 16:41:07
License: AGPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/libgtextutils/ && make install clean
To add the package: pkg install libgtextutils

PKGNAME: libgtextutils

distinfo:

SHA256 (agordon-libgtextutils-0.7_GH0.tar.gz) = 9eed751dea812ab247486f040754815bd3d0239557d0f91c0152d1b5b10dbc3e
SIZE (agordon-libgtextutils-0.7_GH0.tar.gz) = 32478

ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool
2.7.1_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: PD
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/ncbi-blast+/ && make install clean
To add the package: pkg install ncbi-blast+

PKGNAME: ncbi-blast+

distinfo:

TIMESTAMP = 1518995346
SHA256 (ncbi-blast-2.7.1+-src.tar.gz) = 10a78d3007413a6d4c983d2acbf03ef84b622b82bd9a59c6bd9fbdde9d0298ca
SIZE (ncbi-blast-2.7.1+-src.tar.gz) = 23254824

p5-TrimGalore Wrapper around Cutadapt and FastQC for adapter and quality trimming
0.4.5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-12-09 13:23:32
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/p5-TrimGalore/ && make install clean
To add the package: pkg install p5-TrimGalore

PKGNAME: p5-TrimGalore

distinfo:

TIMESTAMP = 1512570215
SHA256 (FelixKrueger-TrimGalore-0.4.5_GH0.tar.gz) = a6b97e554944ddc6ecd50e78df486521f17225d415aad84e9911163faafe1f3c
SIZE (FelixKrueger-TrimGalore-0.4.5_GH0.tar.gz) = 21983909

p5-transdecoder Identify candidate coding regions within transcript sequences
2.1.0_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-03-10 17:46:06
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/p5-transdecoder/ && make install clean
To add the package: pkg install p5-transdecoder

PKGNAME: p5-transdecoder

distinfo:

SHA256 (transdecoder-TransDecoder-v2.1.0_GH0.tar.gz) = 681a8dd72e482cb322d74d8431ddcda61f25c53ad5453d0e22c02c92b2157b24
SIZE (transdecoder-TransDecoder-v2.1.0_GH0.tar.gz) = 11500688

pbbam PacBio BAM C++ library, with SWIG bindings
g20180416_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-08-09 07:58:31
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/pbbam/ && make install clean
To add the package: pkg install pbbam

PKGNAME: pbbam

distinfo:

TIMESTAMP = 1524331626
SHA256 (PacificBiosciences-pbbam-g20180416-c6b8113adb5104948879e9ff69f739121f12a09f_GH0.tar.gz) = f7ede42417110db4fcc3fbc4b837911a0e2242e541a88c8ac34b4c26b4e5aad4
SIZE (PacificBiosciences-pbbam-g20180416-c6b8113adb5104948879e9ff69f739121f12a09f_GH0.tar.gz) = 8105156

pbcopper Core C++ library for Pacific Biosciences tools
g20180413_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-08-09 07:58:31
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/pbcopper/ && make install clean
To add the package: pkg install pbcopper

PKGNAME: pbcopper

distinfo:

TIMESTAMP = 1524500014
SHA256 (PacificBiosciences-pbcopper-g20180413-17ef457a0dbe1894a8d17af7ddba01a6261bf117_GH0.tar.gz) = 13f006d53334a0538657e0ba5c6e02f811f1901cd25fce220fc9011726ffe23f
SIZE (PacificBiosciences-pbcopper-g20180413-17ef457a0dbe1894a8d17af7ddba01a6261bf117_GH0.tar.gz) = 3033636

pbseqan Pacific Biosciences patched and stripped down SeqAn
g20171002 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-21 18:21:30
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/pbseqan/ && make install clean
To add the package: pkg install pbseqan

PKGNAME: pbseqan

distinfo:

TIMESTAMP = 1524324484
SHA256 (PacificBiosciences-seqan-g20171002-d01138731be5d54ef4948053493408075f19e0b1_GH0.tar.gz) = c17d3935405a3282b59ae30e4bcc8e1e690342318aa8e46257a52b2704b92460
SIZE (PacificBiosciences-seqan-g20171002-d01138731be5d54ef4948053493408075f19e0b1_GH0.tar.gz) = 1527074

pear-merger Memory-efficient and highly accurate paired-end read merger
0.9.6 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-22 00:52:37
License: CC-BY-NC-SA-3.0
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/pear-merger/ && make install clean
To add the package: pkg install pear-merger

PKGNAME: pear-merger

distinfo:

TIMESTAMP = 1519766031
SHA256 (pear_0.9.6_src_all.tar.gz) = f7728371e26a5b46fa928b0f7ae1b552ed6a78815b117ba48ef1af98e96c8e2b
SIZE (pear_0.9.6_src_all.tar.gz) = 292790

plinkseq Toolset for working with human genetic variation data
0.10_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/plinkseq/ && make install clean
To add the package: pkg install plinkseq

PKGNAME: plinkseq

distinfo:

SHA256 (plinkseq-src-0.10.tgz) = e9d4705acf8b22eddba0c48cf502e3bd4236f3b60b010f39f94deecf37e94b58
SIZE (plinkseq-src-0.10.tgz) = 6090698

py-cutadapt Finds and removes adapter sequences, primers, poly-A tails, etc
1.14 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-20 18:05:44
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/py-cutadapt/ && make install clean
To add the package: pkg install py27-cutadapt

PKGNAME: py27-cutadapt

distinfo:

TIMESTAMP = 1509552013
SHA256 (cutadapt-1.14.tar.gz) = f32990a8b2f8b53f8f4c723ada3d256a8e8476febdd296506764cc8e83397d3d
SIZE (cutadapt-1.14.tar.gz) = 283631

py-macs2 Analysis of chromatin immunoprecipitation (ChIP) sequences
2.1.0.p20170505_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-03-10 17:46:06
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/py-macs2/ && make install clean
To add the package: pkg install py27-macs2

PKGNAME: py27-macs2

distinfo:

TIMESTAMP = 1512241922
SHA256 (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = c6e4fb8b69b955134399fcdfc075cea5fbc29fabbc46cc4e9acdedeb1174fcfd
SIZE (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = 159560613

rainbow Efficient clustering and assembling of short reads, especially for RAD
2.0.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-02 17:50:46
License: GPLv3+
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/rainbow/ && make install clean
To add the package: pkg install rainbow

PKGNAME: rainbow

distinfo:

TIMESTAMP = 1520455667
SHA256 (rainbow_2.0.4.tar.gz) = 79281aae3bccd1ad467afef6fc7c8327aaa8d56f538821e2833d2b8f26b5bafc
SIZE (rainbow_2.0.4.tar.gz) = 77111

seqtk Tool for processing sequences in FASTA/FASTQ format
1.2.8 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-03 21:57:05
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/seqtk/ && make install clean
To add the package: pkg install seqtk

PKGNAME: seqtk

distinfo:

TIMESTAMP = 1522780777
SHA256 (lh3-seqtk-1.2-8-gd210c57_GH0.tar.gz) = 557317aab7f8cc306a98cd1148449f1e2edd7cd7c78ad5254ba955dfee518fa0
SIZE (lh3-seqtk-1.2-8-gd210c57_GH0.tar.gz) = 21166

slclust Single-linkage clustering with Jaccard similarity
2010.02.02 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: ART10
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/slclust/ && make install clean
To add the package: pkg install slclust

PKGNAME: slclust

distinfo:

SHA256 (slclust_02022010.tar.gz) = 9e21b65288e7fc35647721380cfedffd68608e164b4240c692c511c18c1620f8
SIZE (slclust_02022010.tar.gz) = 23097

smithwaterman Smith-waterman-gotoh alignment algorithm
g20160702 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-15 18:45:52
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/smithwaterman/ && make install clean
To add the package: pkg install smithwaterman

PKGNAME: smithwaterman

distinfo:

TIMESTAMP = 1523600109
SHA256 (ekg-smithwaterman-g20160702-2610e259611ae4cde8f03c72499d28f03f6d38a7_GH0.tar.gz) = 8e1b37ab0e8cd9d3d5cbfdba80258c0ebd0862749b531e213f44cdfe2fc541d8
SIZE (ekg-smithwaterman-g20160702-2610e259611ae4cde8f03c72499d28f03f6d38a7_GH0.tar.gz) = 39190

stacks Software pipeline for building loci from short-read sequences
1.48_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/stacks/ && make install clean
To add the package: pkg install stacks

PKGNAME: stacks

distinfo:

TIMESTAMP = 1520376299
SHA256 (stacks-1.48.tar.gz) = e9f6251f5f609f9dd0bb1de17a51f69ce1a9af531548c4d2456a89783b1dcd1e
SIZE (stacks-1.48.tar.gz) = 895195

tabixpp C++ wrapper to tabix indexer
1.0.0.10 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-15 00:52:17
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/tabixpp/ && make install clean
To add the package: pkg install tabixpp

PKGNAME: tabixpp

distinfo:

TIMESTAMP = 1522943679
SHA256 (ekg-tabixpp-v1.0.0-10-g6bbe690_GH0.tar.gz) = 3a83517f77da15bfd48e6fbaa860560e0f1927254c9f1c332759fe086f65154a
SIZE (ekg-tabixpp-v1.0.0-10-g6bbe690_GH0.tar.gz) = 3694

trimadap Trim adapter sequences from Illumina data using heuristic rules
0.1.3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-22 00:52:37
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/trimadap/ && make install clean
To add the package: pkg install trimadap

PKGNAME: trimadap

distinfo:

TIMESTAMP = 1522773176
SHA256 (lh3-trimadap-0.1-3-gddfef21_GH0.tar.gz) = c2c42a3257d37b12be3523ed0d4415bddd401d72b99b05ba4ae33afaa3c3f373
SIZE (lh3-trimadap-0.1-3-gddfef21_GH0.tar.gz) = 13138

trimmomatic Flexible read trimming tool for Illumina NGS data
0.35 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/trimmomatic/ && make install clean
To add the package: pkg install trimmomatic

PKGNAME: trimmomatic

distinfo:

SHA256 (Trimmomatic-0.35.zip) = 43b993ffa91c039b529db8334bc6aa4b0d601e69c79aaa9a1457ecd1c2c3cc69
SIZE (Trimmomatic-0.35.zip) = 129810

unanimity Pacific Biosciences consensus library and applications
g20180307_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-08-09 07:58:31
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/unanimity/ && make install clean
To add the package: pkg install unanimity

PKGNAME: unanimity

distinfo:

TIMESTAMP = 1524324354
SHA256 (PacificBiosciences-unanimity-g20180307-6f11a13e1472b8c00337ba8c5e94bf83bdab31d6_GH0.tar.gz) = 20ed61c46afcfe86403a564136b96f909149208c51fde16f608e924ad4c59e38
SIZE (PacificBiosciences-unanimity-g20180307-6f11a13e1472b8c00337ba8c5e94bf83bdab31d6_GH0.tar.gz) = 6492231

vcflib C++ library and CLI tools for parsing and manipulating VCF files
1.0.0.r1.130 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-22 01:03:08
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/vcflib/ && make install clean
To add the package: pkg install vcflib

PKGNAME: vcflib

distinfo:

TIMESTAMP = 1523243322
SHA256 (ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz) = 8ec24354dfc7a87c011c865ab75f3eb72646768ab9cb6eff4263e69763338478
SIZE (ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz) = 20138644

vcftools Tools for working with VCF genomics files
0.1.16 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-08-04 02:29:29
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/vcftools/ && make install clean
To add the package: pkg install vcftools

PKGNAME: vcftools

distinfo:

TIMESTAMP = 1533330712
SHA256 (vcftools-vcftools-v0.1.16_GH0.tar.gz) = 575c13073efe65cbff6e2ab99eef12fe04536f5dc1f98de6674c848ca83cf302
SIZE (vcftools-vcftools-v0.1.16_GH0.tar.gz) = 246933

cutecom Graphical serial terminal for embedded programming
0.45.0 comms search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-28 18:39:55
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/comms/cutecom/ && make install clean
To add the package: pkg install cutecom

PKGNAME: cutecom

distinfo:

TIMESTAMP = 1530057218
SHA256 (neundorf-CuteCom-v0.45.0_GH0.tar.gz) = 30cc6a800231684446ef5ebea78092462b2662d06238c146d0b9e24b86685cea
SIZE (neundorf-CuteCom-v0.45.0_GH0.tar.gz) = 1152960

libgamepad Generic gamepad API
0.1.2 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : PortsMon

To install the port: cd /usr/ports/devel/libgamepad/ && make install clean
To add the package: pkg install libgamepad

PKGNAME: libgamepad

distinfo:

SHA256 (libgamepad-0.1.2.tar.xz) = 23268d2aae99f21a0365695ba9fa9e52609b9d5469642912f7625d81a39438d6
SIZE (libgamepad-0.1.2.tar.xz) = 7960

libnxt Lego NXT library
0.3 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/libnxt/ && make install clean
To add the package: pkg install libnxt

PKGNAME: libnxt

distinfo:

SHA256 (libnxt-0.3.tar.gz) = fe310cb917ec69d4e20f9d70ef96d9eec51d0434a8a3580c8a6615488526f8cf
SIZE (libnxt-0.3.tar.gz) = 16247

lnphost Lego RCX iinfrared communication API
1.0a devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/lnphost/ && make install clean
To add the package: pkg install lnphost

PKGNAME: lnphost

distinfo:

SHA256 (lnphost-1.0a.zip) = 194aa84b926b6b2a742184d45ad88ef3e8c6976ad28fdfb8cea1ed69cc236641
SIZE (lnphost-1.0a.zip) = 30007

py-instant Python module for instant inlining of C and C++ code in Python
1.2.0_2 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/py-instant/ && make install clean
To add the package: pkg install py27-instant

PKGNAME: py27-instant

distinfo:

SHA256 (instant-1.2.0.tar.gz) = 12507f90b75f7ac4e222b2b5048212fa849e650b8dae94534a88ef2fe8378618
SIZE (instant-1.2.0.tar.gz) = 125833

roboctl API and tools for communicating with Lego and Vex robots
0.3.8 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/roboctl/ && make install clean
To add the package: pkg install roboctl

PKGNAME: roboctl

distinfo:

SHA256 (roboctl-0.3.8.tar.xz) = ca2a1c700f289691eb7dd40d61ccd78cd176afc154a500eabed7919dac47c383
SIZE (roboctl-0.3.8.tar.xz) = 270384

yaggo Generate command line parser using getopt_long
1.5.9 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/devel/yaggo/ && make install clean
To add the package: pkg install yaggo

PKGNAME: yaggo

distinfo:

SHA256 (gmarcais-yaggo-v1.5.9_GH0.tar.gz) = c96f7d5932fad30c88300446cae9a49d35b6a1fcd5a971e02de129c5d7a53bb7
SIZE (gmarcais-yaggo-v1.5.9_GH0.tar.gz) = 42480

intervaltree Minimal C++ interval tree implementation
g20151213 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-16 20:18:04
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/intervaltree/ && make install clean
To add the package: pkg install intervaltree

PKGNAME: intervaltree

distinfo:

TIMESTAMP = 1523601658
SHA256 (ekg-intervaltree-g20151213-8fc4be91866237995e1105689d84bece619f4663_GH0.tar.gz) = 126f0d0d313e43cd32a07b3a2e573112f4a0e69f5d1618fa38185b93c0f6a696
SIZE (ekg-intervaltree-g20151213-8fc4be91866237995e1105689d84bece619f4663_GH0.tar.gz) = 71387

matlab-installer Easy installation of Linux Matlab(r) on FreeBSD
0.2_4 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/matlab-installer/ && make install clean
To add the package: pkg install matlab-installer

PKGNAME: matlab-installer

distinfo:

SHA256 (matlab-installer-0.2.tar.xz) = 461e694d6140000cb40350daa126ae0e8c9a1e3ee0defee8c84643460bf977b6
SIZE (matlab-installer-0.2.tar.xz) = 6668

multichoose Generate multiset combinations (n multichoose k)
1.0.3.2 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-16 19:31:42
License: MIT
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/multichoose/ && make install clean
To add the package: pkg install multichoose

PKGNAME: multichoose

distinfo:

TIMESTAMP = 1523601462
SHA256 (ekg-multichoose-v1.0.3-2-g3b8d14e_GH0.tar.gz) = 31eaeb816842094468c8204f9eb96bc825f2e60bc8528d593002ebb66532548e
SIZE (ekg-multichoose-v1.0.3-2-g3b8d14e_GH0.tar.gz) = 6555

py-ffc C++ code generator for multilinear forms
1.2.0_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/py-ffc/ && make install clean
To add the package: pkg install py27-ffc

PKGNAME: py27-ffc

distinfo:

SHA256 (ffc-1.2.0.tar.gz) = ac7cca537dac4610821c9ecb0338700970d713d03a9bc176567f1979c89ed869
SIZE (ffc-1.2.0.tar.gz) = 4457544

py-fiat FInite element Automatic Tabulator
1.1.0_5 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-20 18:05:44
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/py-fiat/ && make install clean
To add the package: pkg install py27-fiat

PKGNAME: py27-fiat

distinfo:

SHA256 (fiat-1.1.tar.gz) = 94a9926f478ce9d12e3f0cf4dee0937dfbc7518a37ad4ac701fda3b6cb62a475
SIZE (fiat-1.1.tar.gz) = 3870562

py-ufl Unified Form Language for finite element discretizations
1.20_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/py-ufl/ && make install clean
To add the package: pkg install py27-ufl

PKGNAME: py27-ufl

distinfo:

SHA256 (ufl-1.2.0.tar.gz) = a6336b7a0bb29852696886bf02ed08ed1558050bd017de884fb7499c73bb9719
SIZE (ufl-1.2.0.tar.gz) = 748689

py-viper Minimalistic scientific plotter and visualization module
1.0.1_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-02-19 11:10:43
License: LGPL3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/py-viper/ && make install clean
To add the package: pkg install py27-viper

PKGNAME: py27-viper

distinfo:

SHA256 (viper-1.0.1.tar.gz) = b3cff721e71a96ff62d58f9b3e32383dcfa425f69017d291d03fb3b452a3a01f
SIZE (viper-1.0.1.tar.gz) = 192880

rapid Robust and Accurate Polygon Interference Detection
2.01 math search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-05-19 15:09:01
License: UNKNOWN
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/math/rapid/ && make install clean
To add the package: pkg install rapid

PKGNAME: rapid

distinfo:

SHA256 (RAPID_v2_01.tar.gz) = f924759b9fe144a2ed40fab54047d3bad091ff2ee857e81b70e1b466dde91143
SIZE (RAPID_v2_01.tar.gz) = 24123

genplist Generates a static plist for a port
1.2 ports-mgmt search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/ports-mgmt/genplist/ && make install clean
To add the package: pkg install genplist

PKGNAME: genplist

distinfo:

SHA256 (genplist-1.2.tar.xz) = bf5d61dc01c2699701897cf91332d73dd1abd8e948bd954c0c0bb7710ef600eb
SIZE (genplist-1.2.tar.xz) = 5780

afni Advanced Functional Neuro Imaging
2015.11.13_7 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-06-23 09:27:14
License: GPLv2
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/afni/ && make install clean
To add the package: pkg install afni

PKGNAME: afni

distinfo:

SHA256 (afni-2015.11.13.tar.xz) = b8647ed2f522a520d90cbfd3da70d34849cec421678ff3baf0ecbb6e9e72414b
SIZE (afni-2015.11.13.tar.xz) = 48722840

dlpoly-classic Molecular dynamics simulation package
1.8_15 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/dlpoly-classic/ && make install clean
To add the package: pkg install dlpolyclassic

PKGNAME: dlpolyclassic

distinfo:

SHA256 (dl_class_1.8.tar.gz) = 4ee7e7ded64dd659ddccca6e26326045ce8f49b59217dcbb404363e5a5daf3d5
SIZE (dl_class_1.8.tar.gz) = 2769075

fsom Tiny C library for managing SOM (Self-Organizing Maps) neural networks
g20151117 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-16 19:15:31
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/fsom/ && make install clean
To add the package: pkg install fsom

PKGNAME: fsom

distinfo:

TIMESTAMP = 1523601004
SHA256 (ekg-fsom-g20151117-56695e1611d824cda97f08e932d25d08419170cd_GH0.tar.gz) = 1ba3360985be781bb9f79d974705c86e7bb0719cb83638955e113b5dd83ec8dd
SIZE (ekg-fsom-g20151117-56695e1611d824cda97f08e932d25d08419170cd_GH0.tar.gz) = 9771

fvcom Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_12 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/fvcom/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: fvcom

distinfo:

SHA256 (fvcom/sourcecode1.tar.gz) = b687fccef91e37b3b98554bd80bfbf6f857703cd9bdfde166b502bee7473b7ad
SIZE (fvcom/sourcecode1.tar.gz) = 6162463

fvcom-mpi Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_11 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-03-10 17:46:06
License: not specified in port
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/fvcom-mpi/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: fvcom-openmpi

distinfo:

SHA256 (fvcom/sourcecode1.tar.gz) = b687fccef91e37b3b98554bd80bfbf6f857703cd9bdfde166b502bee7473b7ad
SIZE (fvcom/sourcecode1.tar.gz) = 6162463

nifticlib Neuroimaging Informatics Technology Initiative data format
2.0.0_1 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: PD
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/nifticlib/ && make install clean
To add the package: pkg install nifticlib

PKGNAME: nifticlib

distinfo:

SHA256 (nifticlib-2.0.0.tar.gz) = a3e988e6a32ec57833056f6b09f940c69e79829028da121ff2c5c6f7f94a7f88
SIZE (nifticlib-2.0.0.tar.gz) = 258491

openkim Knowledgebase of Interatomic Models
1.1.1_7 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: CDDL
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/openkim/ && make install clean
To add the package: pkg install openkim

PKGNAME: openkim

distinfo:

SHA256 (openkim-api-v1.1.1.tgz) = 683bda8011754b2525e6f935f52909c141e9d39c2184cefb98babb9e4e5e0959
SIZE (openkim-api-v1.1.1.tgz) = 1529043

voro++ Three-dimensional computations of the Voronoi tessellation
0.4.6 science search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/science/voro++/ && make install clean
To add the package: pkg install voro++

PKGNAME: voro++

distinfo:

SHA256 (voro++-0.4.6.tar.gz) = ef7970071ee2ce3800daa8723649ca069dc4c71cc25f0f7d22552387f3ea437e
SIZE (voro++-0.4.6.tar.gz) = 809124

auto-admin Portable tools for automating systems management
0.4.3 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-05-30 19:48:22
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/auto-admin/ && make install clean
To add the package: pkg install auto-admin

PKGNAME: auto-admin

distinfo:

TIMESTAMP = 1527704891
SHA256 (auto-admin-0.4.3.tar.xz) = 0d62ee733176c11b488adb8f946fd24f3da7172ca9818e9962ce638db2c848b3
SIZE (auto-admin-0.4.3.tar.xz) = 57768

condor High-throughput computing on distributively owned resources
8.4.12_2 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-08-09 07:58:31
License: APACHE20
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/condor/ && make install clean
To add the package: pkg install condor

PKGNAME: condor

distinfo:

TIMESTAMP = 1522374768
SHA256 (condor_src-8.4.12-all-all.tar.gz) = d1544f41f31931fdaa9bfed8cb5f7e669b6e1e53c300888fda05cb29b6091c2a
SIZE (condor_src-8.4.12-all-all.tar.gz) = 17391439

desktop-installer Quickly configure a FreeBSD desktop system
0.6.1 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-05-30 20:14:08
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/desktop-installer/ && make install clean
To add the package: pkg install desktop-installer

PKGNAME: desktop-installer

distinfo:

TIMESTAMP = 1526943437
SHA256 (desktop-installer-0.6.1.tar.xz) = 1c3cda915ad4411b38454a8a12b4af5d848f14f8d96638fb45c689aefcdf98d1
SIZE (desktop-installer-0.6.1.tar.xz) = 169856

diskimage-tools Convenience tools for manipulating disk images
0.2 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-03-01 02:25:59
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/diskimage-tools/ && make install clean
To add the package: pkg install diskimage-tools

PKGNAME: diskimage-tools

distinfo:

TIMESTAMP = 1519659063
SHA256 (diskimage-tools-0.2.tar.xz) = ef7340c52d0254d7b5df2908c1f0947748c63b7533a529ab91fe6fb627ce1291
SIZE (diskimage-tools-0.2.tar.xz) = 2800

endian Report endianness of a system
1.1 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : PortsMon

To install the port: cd /usr/ports/sysutils/endian/ && make install clean
To add the package: pkg install endian

PKGNAME: endian

distinfo:

SHA256 (endian-1.1.tar.xz) = 490183dc9466d97f8ca4a6b03c3823a73efbf8686c1c2023c7978ce5f2aa8603
SIZE (endian-1.1.tar.xz) = 2912

filevercmp Compare version strings as in sort --version-sort
g20151117 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-04-16 17:21:32
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/filevercmp/ && make install clean
To add the package: pkg install filevercmp

PKGNAME: filevercmp

distinfo:

TIMESTAMP = 1523600860
SHA256 (ekg-filevercmp-g20151117-cccb6ba1fffa2898718b0a96c63279e0979e002b_GH0.tar.gz) = de0b23cd95bb121a6ec774cdbd54e1fbabe4e1cc00211997d7ecc2b5a9d102c5
SIZE (ekg-filevercmp-g20151117-cccb6ba1fffa2898718b0a96c63279e0979e002b_GH0.tar.gz) = 3105

ganglia-monitor-core Ganglia cluster monitor, monitoring daemon
3.7.1_2 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-03-21 21:24:44
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/ganglia-monitor-core/ && make install clean
To add the package: pkg install ganglia-monitor-core

PKGNAME: ganglia-monitor-core

distinfo:

TIMESTAMP = 1470747673
SHA256 (ganglia-3.7.1.tar.gz) = e735a6218986a0ff77c737e5888426b103196c12dc2d679494ca9a4269ca69a3
SIZE (ganglia-3.7.1.tar.gz) = 1311019

mcweject Removable media eject
1.1 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD3CLAUSE
SVNWeb : PortsMon

To install the port: cd /usr/ports/sysutils/mcweject/ && make install clean
To add the package: pkg install mcweject

PKGNAME: mcweject

distinfo:

SHA256 (mcweject-1.1.tar.xz) = a42f537c49a47d8044cb918912c921221e0cfe311962ac1364a2de353a83b5cc
SIZE (mcweject-1.1.tar.xz) = 5728

parafly Process multiple commands in parallel on a single server
2013.01.21_5 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-07-29 23:18:46
License: BSD3CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/sysutils/parafly/ && make install clean
To add the package: pkg install parafly

PKGNAME: parafly

distinfo:

SHA256 (parafly-r2013-01-21.tgz) = 64cf7ac2d4af0801b78d58f4057a1489d76b2b8ae59c78997f434d1239fa4abe
SIZE (parafly-r2013-01-21.tgz) = 198711

webbrowser Wrapper for running the "best" available WEB browser
0.3 www search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2018-01-31 01:07:08
License: BSD2CLAUSE
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/www/webbrowser/ && make install clean
To add the package: pkg install webbrowser

PKGNAME: webbrowser

distinfo:

SHA256 (webbrowser-0.3.tar.xz) = 7e100607622d36c5822ffcf8b7cf135c5a70a29179ce832e86c07037f2f0c31f
SIZE (webbrowser-0.3.tar.xz) = 1656

lilyterm Lightweight, but functional terminal emulator
0.9.9.4_1 x11 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last commit date: 2017-12-18 03:55:29
License: GPLv3
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/x11/lilyterm/ && make install clean
To add the package: pkg install lilyterm

PKGNAME: lilyterm

distinfo:

TIMESTAMP = 1509307368
SHA256 (Tetralet-LilyTerm-v0.9.9.4_GH0.tar.gz) = 310cafcc6c155db1862ee42bd2d57da5083d8f6616ffa3a50083113c06846c3a
SIZE (Tetralet-LilyTerm-v0.9.9.4_GH0.tar.gz) = 345032

Number of ports: 80
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