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Number of ports: 95
py-lzstring LZ-based in-memory string compression
1.0.4 archivers search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-22 17:15:07
SVN Revision: 512591
License: MIT
SVNWeb : Homepage
Dependency lines:
  • py36-lzstring>0:archivers/py-lzstring
To install the port: cd /usr/ports/archivers/py-lzstring/ && make install clean
To add the package: pkg install py36-lzstring
PKGNAME: py36-lzstring
Package flavors (<flavor>: <package>)
  • py36: py36-lzstring
  • py27: py27-lzstring

py-xopen Open compressed files transparently
0.8.2 archivers search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-14 13:25:26
SVN Revision: 512008
License: MIT
SVNWeb : Homepage
Dependency lines:
  • py36-xopen>0:archivers/py-xopen
To install the port: cd /usr/ports/archivers/py-xopen/ && make install clean
To add the package: pkg install py36-xopen
PKGNAME: py36-xopen
Package flavors (<flavor>: <package>)
  • py36: py36-xopen

praat Phonetics by Computer
5.4.08_4 audio search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • praat>0:audio/praat
To install the port: cd /usr/ports/audio/praat/ && make install clean
To add the package: pkg install praat
PKGNAME: praat
Flavors: there is no flavor information for this port.

bamtools API and toolkit for handling BAM files
2.5.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-12-25 20:25:40
SVN Revision: 488341
License: MIT
SVNWeb : Homepage
Dependency lines:
  • bamtools>0:biology/bamtools
To install the port: cd /usr/ports/biology/bamtools/ && make install clean
To add the package: pkg install bamtools
PKGNAME: bamtools
Flavors: there is no flavor information for this port.

bedtools Toolset for genome set arithmetic such as intersect, union
2.29.0 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-13 14:21:59
SVN Revision: 511958
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • bedtools>0:biology/bedtools
To install the port: cd /usr/ports/biology/bedtools/ && make install clean
To add the package: pkg install bedtools
PKGNAME: bedtools
Flavors: there is no flavor information for this port.

bolt-lmm Mixed model association testing and variance component analysis
2.3.4_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-19 16:35:28
SVN Revision: 509290
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • bolt-lmm>0:biology/bolt-lmm
To install the port: cd /usr/ports/biology/bolt-lmm/ && make install clean
To add the package: pkg install bolt-lmm
PKGNAME: bolt-lmm
Flavors: there is no flavor information for this port.

bowtie Ultrafast, memory-efficient short read aligner
1.1.2_9 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: ART10
SVNWeb : Homepage
Dependency lines:
  • bowtie>0:biology/bowtie
To install the port: cd /usr/ports/biology/bowtie/ && make install clean
To add the package: pkg install bowtie
PKGNAME: bowtie
Flavors: there is no flavor information for this port.

bowtie2 Ultrafast, memory-efficient short read aligner
2.3.5.1_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-25 11:03:50
SVN Revision: 512777
License: GPLv3+
SVNWeb : Homepage
Dependency lines:
  • bowtie2>0:biology/bowtie2
To install the port: cd /usr/ports/biology/bowtie2/ && make install clean
To add the package: pkg install bowtie2
PKGNAME: bowtie2
Flavors: there is no flavor information for this port.

bwa Burrows-Wheeler sequence aligner
0.7.17 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • bwa>0:biology/bwa
To install the port: cd /usr/ports/biology/bwa/ && make install clean
To add the package: pkg install bwa
PKGNAME: bwa
Flavors: there is no flavor information for this port.

canu Single molecule sequence assembler
1.8_5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-19 16:35:28
SVN Revision: 509290
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • canu>0:biology/canu
To install the port: cd /usr/ports/biology/canu/ && make install clean
To add the package: pkg install canu
PKGNAME: canu
Flavors: there is no flavor information for this port.

cd-hit Clustering and comparing protein or nucleotide sequences
4.8.1_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • cd-hit>0:biology/cd-hit
To install the port: cd /usr/ports/biology/cd-hit/ && make install clean
To add the package: pkg install cd-hit
PKGNAME: cd-hit
Flavors: there is no flavor information for this port.

cdbfasta Fast indexing and retrieval of FASTA records from flat file databases
2010.07.22 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • cdbfasta>0:biology/cdbfasta
To install the port: cd /usr/ports/biology/cdbfasta/ && make install clean
To add the package: pkg install cdbfasta
PKGNAME: cdbfasta
Flavors: there is no flavor information for this port.

clustal-omega Multiple alignment of nucleic acid and protein, replaces clustalw
1.2.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-21 23:15:26
SVN Revision: 470582
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • clustal-omega>0:biology/clustal-omega
To install the port: cd /usr/ports/biology/clustal-omega/ && make install clean
To add the package: pkg install clustal-omega
PKGNAME: clustal-omega
Flavors: there is no flavor information for this port.

clustalw Multiple alignment program for DNA or proteins
2.1_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-21 02:13:40
SVN Revision: 470494
License: LGPL3
SVNWeb : Homepage
Dependency lines:
  • clustalw>0:biology/clustalw
To install the port: cd /usr/ports/biology/clustalw/ && make install clean
To add the package: pkg install clustalw
PKGNAME: clustalw
Flavors: there is no flavor information for this port.

ddocent Bash pipeline for RAD sequencing
2.7.8_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: MIT
SVNWeb : Homepage
Dependency lines:
  • dDocent>0:biology/ddocent
To install the port: cd /usr/ports/biology/ddocent/ && make install clean
To add the package: pkg install dDocent
PKGNAME: dDocent
Flavors: there is no flavor information for this port.

fastahack Utility for indexing and sequence extraction from FASTA files
1.0.0 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-10-06 22:34:32
SVN Revision: 513910
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • fastahack>0:biology/fastahack
To install the port: cd /usr/ports/biology/fastahack/ && make install clean
To add the package: pkg install fastahack
PKGNAME: fastahack
Flavors: there is no flavor information for this port.

fastool Simple and quick FastQ and FastA tool for file reading and conversion
0.1.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • fastool>0:biology/fastool
To install the port: cd /usr/ports/biology/fastool/ && make install clean
To add the package: pkg install fastool
PKGNAME: fastool
Flavors: there is no flavor information for this port.

fastp Ultra-fast all-in-one FASTQ preprocessor
0.20.0_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: MIT
SVNWeb : Homepage
Dependency lines:
  • fastp>0:biology/fastp
To install the port: cd /usr/ports/biology/fastp/ && make install clean
To add the package: pkg install fastp
PKGNAME: fastp
Flavors: there is no flavor information for this port.

fastqc Quality control tool for high throughput sequence data
0.11.8 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-21 03:44:54
SVN Revision: 512461
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • fastqc>0:biology/fastqc
To install the port: cd /usr/ports/biology/fastqc/ && make install clean
To add the package: pkg install fastqc
PKGNAME: fastqc
Flavors: there is no flavor information for this port.

fasttree Approximately-maximum-likelihood phylogenetic trees from alignments
2.1.10_4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv2+
SVNWeb : Homepage
Dependency lines:
  • FastTree>0:biology/fasttree
To install the port: cd /usr/ports/biology/fasttree/ && make install clean
To add the package: pkg install FastTree
PKGNAME: FastTree
Flavors: there is no flavor information for this port.

fastx-toolkit CLI tools for Short-Reads FASTA/FASTQ files preprocessing
0.0.14 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-05-16 16:13:43
SVN Revision: 470124
License: AGPLv3+
SVNWeb : Homepage
Dependency lines:
  • fastx_toolkit>0:biology/fastx-toolkit
To install the port: cd /usr/ports/biology/fastx-toolkit/ && make install clean
To add the package: pkg install fastx_toolkit
PKGNAME: fastx_toolkit
Flavors: there is no flavor information for this port.

freebayes Bayesian haplotype-based polymorphism discovery and genotyping
1.2.0_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: MIT
SVNWeb : Homepage
Dependency lines:
  • freebayes>0:biology/freebayes
To install the port: cd /usr/ports/biology/freebayes/ && make install clean
To add the package: pkg install freebayes
PKGNAME: freebayes
Flavors: there is no flavor information for this port.

gemma Genome-wide Efficient Mixed Model Association
0.98.1_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • gemma>0:biology/gemma
To install the port: cd /usr/ports/biology/gemma/ && make install clean
To add the package: pkg install gemma
PKGNAME: gemma
Flavors: there is no flavor information for this port.

gmap Genomic Mapping and Alignment Program for mRNA and EST Sequences
2015.09.21 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-13 17:00:39
SVN Revision: 508834
License: GMAP
SVNWeb : Homepage
Dependency lines:
  • gmap>0:biology/gmap
To install the port: cd /usr/ports/biology/gmap/ && make install clean
To add the package: pkg install gmap
PKGNAME: gmap
Flavors: there is no flavor information for this port.

haplohseq Identify regions of allelic imbalance
0.1.2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-16 02:07:31
SVN Revision: 512137
License: MIT
SVNWeb : Homepage
Dependency lines:
  • haplohseq>0:biology/haplohseq
To install the port: cd /usr/ports/biology/haplohseq/ && make install clean
To add the package: pkg install haplohseq
PKGNAME: haplohseq
Flavors: there is no flavor information for this port.

hisat2 Alignment program for mapping next-generation sequencing reads
2.1.0.23 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-01-11 16:02:05
SVN Revision: 489981
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • hisat2>0:biology/hisat2
To install the port: cd /usr/ports/biology/hisat2/ && make install clean
To add the package: pkg install hisat2
PKGNAME: hisat2
Flavors: there is no flavor information for this port.

jellyfish Fast, memory-efficient counting of k-mers in DNA
2.2.10_7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-14 23:01:13
SVN Revision: 512079
License: GPLv3+
SVNWeb : Homepage
Dependency lines:
  • Jellyfish>0:biology/jellyfish
To install the port: cd /usr/ports/biology/jellyfish/ && make install clean
To add the package: pkg install Jellyfish
PKGNAME: Jellyfish
Flavors: there is no flavor information for this port.

kallisto Quantify abundances of transcripts from RNA-Seq data
0.46.0_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • kallisto>0:biology/kallisto
To install the port: cd /usr/ports/biology/kallisto/ && make install clean
To add the package: pkg install kallisto
PKGNAME: kallisto
Flavors: there is no flavor information for this port.

libgtextutils Gordon's text utilities
0.7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-03-29 16:41:07
SVN Revision: 465904
License: AGPLv3
SVNWeb : Homepage
Dependency lines:
  • libgtextutils>0:biology/libgtextutils
To install the port: cd /usr/ports/biology/libgtextutils/ && make install clean
To add the package: pkg install libgtextutils
PKGNAME: libgtextutils
Flavors: there is no flavor information for this port.

minimap2 Pairwise aligner for genomic and spliced nucleotide sequences
2.17 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-05-05 15:56:07
SVN Revision: 500860
License: MIT
SVNWeb : Homepage
Dependency lines:
  • minimap2>0:biology/minimap2
To install the port: cd /usr/ports/biology/minimap2/ && make install clean
To add the package: pkg install minimap2
PKGNAME: minimap2
Flavors: there is no flavor information for this port.

ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool
2.9.0_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: PD
SVNWeb : Homepage
Dependency lines:
  • ncbi-blast+>0:biology/ncbi-blast+
To install the port: cd /usr/ports/biology/ncbi-blast+/ && make install clean
To add the package: pkg install ncbi-blast+
PKGNAME: ncbi-blast+
Flavors: there is no flavor information for this port.

p5-TrimGalore Wrapper around Cutadapt and FastQC for adapter and quality trimming
0.6.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-21 03:51:26
SVN Revision: 512462
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • p5-TrimGalore>0:biology/p5-TrimGalore
To install the port: cd /usr/ports/biology/p5-TrimGalore/ && make install clean
To add the package: pkg install p5-TrimGalore
PKGNAME: p5-TrimGalore
Flavors: there is no flavor information for this port.

p5-transdecoder Identify candidate coding regions within transcript sequences
5.4.0_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • p5-transdecoder>0:biology/p5-transdecoder
To install the port: cd /usr/ports/biology/p5-transdecoder/ && make install clean
To add the package: pkg install p5-transdecoder
PKGNAME: p5-transdecoder
Flavors: there is no flavor information for this port.

pbbam PacBio BAM C++ library, with SWIG bindings
0.18.0_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-19 16:35:28
SVN Revision: 509290
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • pbbam>0:biology/pbbam
To install the port: cd /usr/ports/biology/pbbam/ && make install clean
To add the package: pkg install pbbam
PKGNAME: pbbam
Flavors: there is no flavor information for this port.

pbcopper Core C++ library for Pacific Biosciences tools
0.4.1_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-19 16:35:28
SVN Revision: 509290
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • pbcopper>0:biology/pbcopper
To install the port: cd /usr/ports/biology/pbcopper/ && make install clean
To add the package: pkg install pbcopper
PKGNAME: pbcopper
Flavors: there is no flavor information for this port.

pbseqan Pacific Biosciences patched and stripped down SeqAn
g20171011 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Upstream merged into SeqAn project: Use biology/seqan
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-02-20 01:53:35
SVN Revision: 493403
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • pbseqan>0:biology/pbseqan
To install the port: cd /usr/ports/biology/pbseqan/ && make install clean
To add the package: pkg install pbseqan
PKGNAME: pbseqan
Flavors: there is no flavor information for this port.

pear-merger Memory-efficient and highly accurate paired-end read merger
0.9.6 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-06-22 00:52:37
SVN Revision: 473009
License: CC-BY-NC-SA-3.0
SVNWeb : Homepage
Dependency lines:
  • pear-merger>0:biology/pear-merger
To install the port: cd /usr/ports/biology/pear-merger/ && make install clean
To add the package: pkg install pear-merger
PKGNAME: pear-merger
Flavors: there is no flavor information for this port.

plinkseq Toolset for working with human genetic variation data
0.10_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • plinkseq>0:biology/plinkseq
To install the port: cd /usr/ports/biology/plinkseq/ && make install clean
To add the package: pkg install plinkseq
PKGNAME: plinkseq
Flavors: there is no flavor information for this port.

py-cutadapt Trim adapters from high-throughput sequencing reads
2.5 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-13 14:17:26
SVN Revision: 511957
License: MIT
SVNWeb : Homepage
Dependency lines:
  • py36-cutadapt>0:biology/py-cutadapt
To install the port: cd /usr/ports/biology/py-cutadapt/ && make install clean
To add the package: pkg install py36-cutadapt
PKGNAME: py36-cutadapt
Package flavors (<flavor>: <package>)
  • py36: py36-cutadapt

py-dnaio Read and write FASTQ and FASTA
0.3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-03-24 19:40:26
SVN Revision: 496770
License: MIT
SVNWeb : Homepage
Dependency lines:
  • py36-dnaio>0:biology/py-dnaio
To install the port: cd /usr/ports/biology/py-dnaio/ && make install clean
To add the package: pkg install py36-dnaio
PKGNAME: py36-dnaio
Package flavors (<flavor>: <package>)
  • py36: py36-dnaio

py-macs2 Analysis of chromatin immunoprecipitation (ChIP) sequences
2.1.0.p20170505_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • py27-macs2>0:biology/py-macs2
To install the port: cd /usr/ports/biology/py-macs2/ && make install clean
To add the package: pkg install py27-macs2
PKGNAME: py27-macs2
Package flavors (<flavor>: <package>)
  • py27: py27-macs2

py-multiqc Aggregate bioinformatics analysis reports across samples and tools
1.7 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-23 17:09:30
SVN Revision: 512646
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • py36-multiqc>0:biology/py-multiqc
To install the port: cd /usr/ports/biology/py-multiqc/ && make install clean
To add the package: pkg install py36-multiqc
PKGNAME: py36-multiqc
Package flavors (<flavor>: <package>)
  • py36: py36-multiqc
  • py27: py27-multiqc

rainbow Efficient clustering and assembling of short reads, especially for RAD
2.0.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-02 17:50:46
SVN Revision: 466235
License: GPLv3+
SVNWeb : Homepage
Dependency lines:
  • rainbow>0:biology/rainbow
To install the port: cd /usr/ports/biology/rainbow/ && make install clean
To add the package: pkg install rainbow
PKGNAME: rainbow
Flavors: there is no flavor information for this port.

seqtk Tool for processing sequences in FASTA/FASTQ format
1.2.8 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-03 21:57:05
SVN Revision: 466379
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • seqtk>0:biology/seqtk
To install the port: cd /usr/ports/biology/seqtk/ && make install clean
To add the package: pkg install seqtk
PKGNAME: seqtk
Flavors: there is no flavor information for this port.

slclust Single-linkage clustering with Jaccard similarity
2010.02.02 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: ART10
SVNWeb : Homepage
Dependency lines:
  • slclust>0:biology/slclust
To install the port: cd /usr/ports/biology/slclust/ && make install clean
To add the package: pkg install slclust
PKGNAME: slclust
Flavors: there is no flavor information for this port.

smithwaterman Smith-waterman-gotoh alignment algorithm
g20160702 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-15 18:45:52
SVN Revision: 467402
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • smithwaterman>0:biology/smithwaterman
To install the port: cd /usr/ports/biology/smithwaterman/ && make install clean
To add the package: pkg install smithwaterman
PKGNAME: smithwaterman
Flavors: there is no flavor information for this port.

stacks Software pipeline for building loci from short-read sequences
2.4_1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • stacks>0:biology/stacks
To install the port: cd /usr/ports/biology/stacks/ && make install clean
To add the package: pkg install stacks
PKGNAME: stacks
Flavors: there is no flavor information for this port.

star Spliced Transcripts Alignment to a Reference
2.7.2.d biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-10-06 23:18:31
SVN Revision: 513915
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • rna-STAR>0:biology/star
To install the port: cd /usr/ports/biology/star/ && make install clean
To add the package: pkg install rna-STAR
PKGNAME: rna-STAR
Flavors: there is no flavor information for this port.

tabixpp C++ wrapper to tabix indexer
1.0.0.10 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-15 00:52:17
SVN Revision: 467343
License: MIT
SVNWeb : Homepage
Dependency lines:
  • tabixpp>0:biology/tabixpp
To install the port: cd /usr/ports/biology/tabixpp/ && make install clean
To add the package: pkg install tabixpp
PKGNAME: tabixpp
Flavors: there is no flavor information for this port.

tophat Fast splice junction mapper for RNA-Seq reads
2.1.1 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-27 01:49:49
SVN Revision: 512997
License: BSL
SVNWeb : Homepage
Dependency lines:
  • tophat>0:biology/tophat
To install the port: cd /usr/ports/biology/tophat/ && make install clean
To add the package: pkg install tophat
PKGNAME: tophat
Flavors: there is no flavor information for this port.

trimadap Trim adapter sequences from Illumina data using heuristic rules
0.1.3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-05-11 01:18:24
SVN Revision: 501207
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • trimadap>0:biology/trimadap
To install the port: cd /usr/ports/biology/trimadap/ && make install clean
To add the package: pkg install trimadap
PKGNAME: trimadap
Flavors: there is no flavor information for this port.

trimmomatic Flexible read trimming tool for Illumina NGS data
0.39 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-14 15:45:49
SVN Revision: 512018
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • trimmomatic>0:biology/trimmomatic
To install the port: cd /usr/ports/biology/trimmomatic/ && make install clean
To add the package: pkg install trimmomatic
PKGNAME: trimmomatic
Flavors: there is no flavor information for this port.

unanimity Pacific Biosciences consensus library and applications
3.4.1_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-19 16:35:28
SVN Revision: 509290
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • unanimity>0:biology/unanimity
To install the port: cd /usr/ports/biology/unanimity/ && make install clean
To add the package: pkg install unanimity
PKGNAME: unanimity
Flavors: there is no flavor information for this port.

vcflib C++ library and CLI tools for parsing and manipulating VCF files
1.0.0.r1.130 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-06-22 01:03:08
SVN Revision: 473010
License: MIT
SVNWeb : Homepage
Dependency lines:
  • vcflib>0:biology/vcflib
To install the port: cd /usr/ports/biology/vcflib/ && make install clean
To add the package: pkg install vcflib
PKGNAME: vcflib
Flavors: there is no flavor information for this port.

vcftools Tools for working with VCF genomics files
0.1.16 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-08-04 02:29:29
SVN Revision: 476330
License: LGPL3
SVNWeb : Homepage
Dependency lines:
  • vcftools>0:biology/vcftools
To install the port: cd /usr/ports/biology/vcftools/ && make install clean
To add the package: pkg install vcftools
PKGNAME: vcftools
Flavors: there is no flavor information for this port.

vsearch Versatile open-source tool for metagenomics
2.13.4 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-05-11 14:42:33
SVN Revision: 501259
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • vsearch>0:biology/vsearch
To install the port: cd /usr/ports/biology/vsearch/ && make install clean
To add the package: pkg install vsearch
PKGNAME: vsearch
Flavors: there is no flavor information for this port.

cutecom Graphical serial terminal for embedded programming
0.51.0_1 comms search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • cutecom>0:comms/cutecom
To install the port: cd /usr/ports/comms/cutecom/ && make install clean
To add the package: pkg install cutecom
PKGNAME: cutecom
Flavors: there is no flavor information for this port.

libgamepad Generic gamepad API
0.1.2 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb
Dependency lines:
  • libgamepad>0:devel/libgamepad
To install the port: cd /usr/ports/devel/libgamepad/ && make install clean
To add the package: pkg install libgamepad
PKGNAME: libgamepad
Flavors: there is no flavor information for this port.

libnxt Lego NXT library
0.3 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-13 17:01:59
SVN Revision: 508835
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • libnxt>0:devel/libnxt
To install the port: cd /usr/ports/devel/libnxt/ && make install clean
To add the package: pkg install libnxt
PKGNAME: libnxt
Flavors: there is no flavor information for this port.

lnphost Lego RCX iinfrared communication API
1.0a devel search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • lnphost>0:devel/lnphost
To install the port: cd /usr/ports/devel/lnphost/ && make install clean
To add the package: pkg install lnphost
PKGNAME: lnphost
Flavors: there is no flavor information for this port.

py-instant Python module for instant inlining of C and C++ code in Python
1.2.0_2 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-02-19 11:10:43
SVN Revision: 462307
License: LGPL3
SVNWeb : Homepage
Dependency lines:
  • py27-instant>0:devel/py-instant
To install the port: cd /usr/ports/devel/py-instant/ && make install clean
To add the package: pkg install py27-instant
PKGNAME: py27-instant
Flavors: there is no flavor information for this port.

roboctl API and tools for communicating with Lego and Vex robots
0.3.8 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • roboctl>0:devel/roboctl
To install the port: cd /usr/ports/devel/roboctl/ && make install clean
To add the package: pkg install roboctl
PKGNAME: roboctl
Flavors: there is no flavor information for this port.

yaggo Generate command line parser using getopt_long
1.5.9 devel search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • yaggo>0:devel/yaggo
To install the port: cd /usr/ports/devel/yaggo/ && make install clean
To add the package: pkg install yaggo
PKGNAME: yaggo
Flavors: there is no flavor information for this port.

py-spectra Color scales and color conversion made easy for Python
0.0.11 graphics search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-22 16:54:33
SVN Revision: 512590
License: MIT
SVNWeb : Homepage
Dependency lines:
  • py36-spectra>0:graphics/py-spectra
To install the port: cd /usr/ports/graphics/py-spectra/ && make install clean
To add the package: pkg install py36-spectra
PKGNAME: py36-spectra
Package flavors (<flavor>: <package>)
  • py36: py36-spectra
  • py27: py27-spectra

intervaltree Minimal C++ interval tree implementation
g20151213_2 math search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: MIT
SVNWeb : Homepage
Dependency lines:
  • intervaltree>0:math/intervaltree
To install the port: cd /usr/ports/math/intervaltree/ && make install clean
To add the package: pkg install intervaltree
PKGNAME: intervaltree
Flavors: there is no flavor information for this port.

matlab-installer Easy installation of Linux Matlab(r) on FreeBSD
0.2_4 math search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • matlab-installer>0:math/matlab-installer
To install the port: cd /usr/ports/math/matlab-installer/ && make install clean
To add the package: pkg install matlab-installer
PKGNAME: matlab-installer
Flavors: there is no flavor information for this port.

multichoose Generate multiset combinations (n multichoose k)
1.0.3.2 math search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-16 19:31:42
SVN Revision: 467502
License: MIT
SVNWeb : Homepage
Dependency lines:
  • multichoose>0:math/multichoose
To install the port: cd /usr/ports/math/multichoose/ && make install clean
To add the package: pkg install multichoose
PKGNAME: multichoose
Flavors: there is no flavor information for this port.

py-ffc C++ code generator for multilinear forms
1.2.0_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-02-19 11:10:43
SVN Revision: 462307
License: LGPL3
SVNWeb : Homepage
Dependency lines:
  • py27-ffc>0:math/py-ffc
To install the port: cd /usr/ports/math/py-ffc/ && make install clean
To add the package: pkg install py27-ffc
PKGNAME: py27-ffc
Flavors: there is no flavor information for this port.

py-fiat FInite element Automatic Tabulator
1.1.0_7 math search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: LGPL3
SVNWeb : Homepage
Dependency lines:
  • py27-fiat>0:math/py-fiat
To install the port: cd /usr/ports/math/py-fiat/ && make install clean
To add the package: pkg install py27-fiat
PKGNAME: py27-fiat
Package flavors (<flavor>: <package>)
  • py27: py27-fiat

py-ufl Unified Form Language for finite element discretizations
1.20_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-02-19 11:10:43
SVN Revision: 462307
License: LGPL3
SVNWeb : Homepage
Dependency lines:
  • py27-ufl>0:math/py-ufl
To install the port: cd /usr/ports/math/py-ufl/ && make install clean
To add the package: pkg install py27-ufl
PKGNAME: py27-ufl
Flavors: there is no flavor information for this port.

py-viper Minimalistic scientific plotter and visualization module
1.0.1_1 math search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-02-19 11:10:43
SVN Revision: 462307
License: LGPL3
SVNWeb : Homepage
Dependency lines:
  • py27-viper>0:math/py-viper
To install the port: cd /usr/ports/math/py-viper/ && make install clean
To add the package: pkg install py27-viper
PKGNAME: py27-viper
Flavors: there is no flavor information for this port.

rapid Robust and Accurate Polygon Interference Detection
2.01 math search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-13 23:29:43
SVN Revision: 508882
License: UNKNOWN
SVNWeb : Homepage
Dependency lines:
  • rapid>0:math/rapid
To install the port: cd /usr/ports/math/rapid/ && make install clean
To add the package: pkg install rapid
PKGNAME: rapid
Flavors: there is no flavor information for this port.

genplist Generates a static plist for a port
1.2 ports-mgmt search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • genplist>0:ports-mgmt/genplist
To install the port: cd /usr/ports/ports-mgmt/genplist/ && make install clean
To add the package: pkg install genplist
PKGNAME: genplist
Flavors: there is no flavor information for this port.

afni Advanced Functional Neuro Imaging
19.1.20_3 science search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-28 11:56:15
SVN Revision: 513115
License: GPLv2
SVNWeb : Homepage
Dependency lines:
  • afni>0:science/afni
To install the port: cd /usr/ports/science/afni/ && make install clean
To add the package: pkg install afni
PKGNAME: afni
Flavors: there is no flavor information for this port.

dlpoly-classic Molecular dynamics simulation package
1.8_18 science search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-14 13:16:13
SVN Revision: 508909
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • dlpolyclassic>0:science/dlpoly-classic
To install the port: cd /usr/ports/science/dlpoly-classic/ && make install clean
To add the package: pkg install dlpolyclassic
PKGNAME: dlpolyclassic
Flavors: there is no flavor information for this port.

fsom Tiny C library for managing SOM (Self-Organizing Maps) neural networks
g20151117_2 science search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • fsom>0:science/fsom
To install the port: cd /usr/ports/science/fsom/ && make install clean
To add the package: pkg install fsom
PKGNAME: fsom
Flavors: there is no flavor information for this port.

fvcom Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_16 science search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-31 18:11:57
SVN Revision: 510405
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • fvcom>0:science/fvcom
To install the port: cd /usr/ports/science/fvcom/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: fvcom
Flavors: there is no flavor information for this port.

fvcom-mpi Unstructured Grid Finite Volume Coastal Ocean Model
2.7.1_14 science search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch. NOTE: Slave port - quarterly revision is most likely wrong.
Ignore IGNORE: may not be redistributed because of licensing reasons. Please register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code sourcecode1.tar.gz and place it in /var/db/repos/PORTS-head/distfiles/fvcom/
Restricted RESTRICTED: Requires (free) registration
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-31 18:11:57
SVN Revision: 510405
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • fvcom-openmpi>0:science/fvcom-mpi
To install the port: cd /usr/ports/science/fvcom-mpi/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: fvcom-openmpi
Flavors: there is no flavor information for this port.

nifticlib Neuroimaging Informatics Technology Initiative data format
2.0.0_1 science search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-06-08 20:24:18
SVN Revision: 503748
License: PD
SVNWeb : Homepage
Dependency lines:
  • nifticlib>0:science/nifticlib
To install the port: cd /usr/ports/science/nifticlib/ && make install clean
To add the package: pkg install nifticlib
PKGNAME: nifticlib
Flavors: there is no flavor information for this port.

openkim Knowledgebase of Interatomic Models
1.1.1_10 science search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: CDDL
SVNWeb : Homepage
Dependency lines:
  • openkim>0:science/openkim
To install the port: cd /usr/ports/science/openkim/ && make install clean
To add the package: pkg install openkim
PKGNAME: openkim
Flavors: there is no flavor information for this port.

packmol Pack molecules in defined regions of space
18.169 science search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-09-22 20:06:44
SVN Revision: 512600
License: MIT
SVNWeb : Homepage
Dependency lines:
  • packmol>0:science/packmol
To install the port: cd /usr/ports/science/packmol/ && make install clean
To add the package: pkg install packmol
PKGNAME: packmol
Flavors: there is no flavor information for this port.

voro++ Three-dimensional computations of the Voronoi tessellation
0.4.6_1 science search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-11-04 15:52:43
SVN Revision: 484101
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • voro++>0:science/voro++
To install the port: cd /usr/ports/science/voro++/ && make install clean
To add the package: pkg install voro++
PKGNAME: voro++
Flavors: there is no flavor information for this port.

auto-admin Portable tools for automating systems management
0.4.8 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-25 22:46:44
SVN Revision: 507330
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • auto-admin>0:sysutils/auto-admin
To install the port: cd /usr/ports/sysutils/auto-admin/ && make install clean
To add the package: pkg install auto-admin
PKGNAME: auto-admin
Flavors: there is no flavor information for this port.

condor High-throughput computing on distributively owned resources
8.4.12_8 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-19 16:35:28
SVN Revision: 509290
License: APACHE20
SVNWeb : Homepage
Dependency lines:
  • condor>0:sysutils/condor
To install the port: cd /usr/ports/sysutils/condor/ && make install clean
To add the package: pkg install condor
PKGNAME: condor
Flavors: there is no flavor information for this port.

desktop-installer Quickly configure a FreeBSD desktop system
0.6.7 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-17 16:11:21
SVN Revision: 509157
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • desktop-installer>0:sysutils/desktop-installer
To install the port: cd /usr/ports/sysutils/desktop-installer/ && make install clean
To add the package: pkg install desktop-installer
PKGNAME: desktop-installer
Flavors: there is no flavor information for this port.

diskimage-tools Convenience tools for manipulating disk images
0.2 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-03-01 02:25:59
SVN Revision: 463277
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • diskimage-tools>0:sysutils/diskimage-tools
To install the port: cd /usr/ports/sysutils/diskimage-tools/ && make install clean
To add the package: pkg install diskimage-tools
PKGNAME: diskimage-tools
Flavors: there is no flavor information for this port.

endian Report endianness of a system
1.1 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb
Dependency lines:
  • endian>0:sysutils/endian
To install the port: cd /usr/ports/sysutils/endian/ && make install clean
To add the package: pkg install endian
PKGNAME: endian
Flavors: there is no flavor information for this port.

filevercmp Compare version strings as in sort --version-sort
g20151117 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-04-16 17:21:32
SVN Revision: 467487
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • filevercmp>0:sysutils/filevercmp
To install the port: cd /usr/ports/sysutils/filevercmp/ && make install clean
To add the package: pkg install filevercmp
PKGNAME: filevercmp
Flavors: there is no flavor information for this port.

ganglia-monitor-core Ganglia cluster monitor, monitoring daemon
3.7.1_2 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-14 13:16:13
SVN Revision: 508909
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • ganglia-monitor-core>0:sysutils/ganglia-monitor-core
To install the port: cd /usr/ports/sysutils/ganglia-monitor-core/ && make install clean
To add the package: pkg install ganglia-monitor-core
PKGNAME: ganglia-monitor-core
Flavors: there is no flavor information for this port.

ganglia-webfrontend Ganglia cluster monitor, web frontend
3.7.2_2 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-14 13:16:13
SVN Revision: 508909
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • ganglia-webfrontend>0:sysutils/ganglia-webfrontend
To install the port: cd /usr/ports/sysutils/ganglia-webfrontend/ && make install clean
To add the package: pkg install ganglia-webfrontend
PKGNAME: ganglia-webfrontend
Flavors: there is no flavor information for this port.

mcweject Removable media eject
1.1 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-08-14 13:16:13
SVN Revision: 508909
License: BSD3CLAUSE
SVNWeb
Dependency lines:
  • mcweject>0:sysutils/mcweject
To install the port: cd /usr/ports/sysutils/mcweject/ && make install clean
To add the package: pkg install mcweject
PKGNAME: mcweject
Flavors: there is no flavor information for this port.

parafly Process multiple commands in parallel on a single server
2013.01.21_7 sysutils search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-07-26 21:46:57
SVN Revision: 507372
License: BSD3CLAUSE
SVNWeb : Homepage
Dependency lines:
  • parafly>0:sysutils/parafly
To install the port: cd /usr/ports/sysutils/parafly/ && make install clean
To add the package: pkg install parafly
PKGNAME: parafly
Flavors: there is no flavor information for this port.

slurm-wlm Simple Linux Utility for Resource Management
19.05.1.2_2 sysutils search for ports that depend on this port An older version of this port was marked as vulnerable. Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2019-10-08 09:12:01
SVN Revision: 514051
License: GPLv2+
SVNWeb : Homepage
Dependency lines:
  • slurm-wlm>0:sysutils/slurm-wlm
To install the port: cd /usr/ports/sysutils/slurm-wlm/ && make install clean
To add the package: pkg install slurm-wlm
PKGNAME: slurm-wlm
Flavors: there is no flavor information for this port.

webbrowser Wrapper for running the "best" available WEB browser
0.3 www search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2018-01-31 01:07:08
SVN Revision: 460452
License: BSD2CLAUSE
SVNWeb : Homepage
Dependency lines:
  • webbrowser>0:www/webbrowser
To install the port: cd /usr/ports/www/webbrowser/ && make install clean
To add the package: pkg install webbrowser
PKGNAME: webbrowser
Flavors: there is no flavor information for this port.

lilyterm Lightweight, but functional terminal emulator
0.9.9.4_1 x11 search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Last Update: 2017-12-18 03:55:29
SVN Revision: 456586
License: GPLv3
SVNWeb : Homepage
Dependency lines:
  • lilyterm>0:x11/lilyterm
To install the port: cd /usr/ports/x11/lilyterm/ && make install clean
To add the package: pkg install lilyterm
PKGNAME: lilyterm
Flavors: there is no flavor information for this port.

Number of ports: 95
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8 vulnerabilities affecting 24 ports have been reported in the past 14 days

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Last updated:
2019-10-15 15:43:31


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