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Number of ports: 6
consed Graphical tool for editing Phrap assemblies
27.0 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Broken BROKEN: unfetchable
Ignore IGNORE: is marked as broken: unfetchable
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request access permission via e-mail to get the tarball. Free for academic use.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last Update: 2019-11-06 12:48:32
SVN Revision: 516880
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • consed>0:biology/consed
To install the port: cd /usr/ports/biology/consed/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: consed
Flavors: there is no flavor information for this port.

mrbayes Bayesian inference of phylogeny
3.1.2_3 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Broken BROKEN: unfetchable
Ignore IGNORE: is marked as broken: unfetchable
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last Update: 2019-11-06 12:48:32
SVN Revision: 516880
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • mrbayes>0:biology/mrbayes
To install the port: cd /usr/ports/biology/mrbayes/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: mrbayes
Flavors: there is no flavor information for this port.

muscle MUltiple Sequence Comparison by Log-Expectation
3.8.31 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last Update: 2016-11-11 09:31:03
SVN Revision: 425879
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • muscle>0:biology/muscle
To install the port: cd /usr/ports/biology/muscle/ && make install clean
To add the package: pkg install muscle
PKGNAME: muscle
Flavors: there is no flavor information for this port.

phrap Phrap is a program for assembling shotgun DNA sequence data
1.090518 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Ignore IGNORE: you must request the source code \(distrib.tar.gz\) via e-mail, place it manually in /var/db/repos/PORTS-head/distfiles/phrap, and then try it again
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last Update: 2018-09-10 14:14:52
SVN Revision: 479406
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • phrap>0:biology/phrap
To install the port: cd /usr/ports/biology/phrap/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: phrap
Flavors: there is no flavor information for this port.

phred Base calling and quality value assignment on DNA sequencing
0.020425.c biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last Update: 2019-08-13 17:00:39
SVN Revision: 508834
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • phred>0:biology/phred
To install the port: cd /usr/ports/biology/phred/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: phred
Flavors: there is no flavor information for this port.

velvet Sequence assembler for very short reads
1.2.10_2 biology search for ports that depend on this port Find issues related to this port Report an issue related to this port Version of this port present on the latest quarterly branch.
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Last Update: 2018-01-11 18:09:00
SVN Revision: 458761
License: not specified in port
SVNWeb : Homepage
Dependency lines:
  • velvet>0:biology/velvet
To install the port: cd /usr/ports/biology/velvet/ && make install clean
To add the package: pkg install velvet
PKGNAME: velvet
Flavors: there is no flavor information for this port.

Number of ports: 6
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