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non port: head/biology/phd2fasta/Makefile

Number of commits found: 5

Fri, 3 Jan 2014
[ 15:46 adamw ] Original commit 
338550 biology/biojava/Makefile
338550 biology/blast/Makefile
338550 biology/consed/Makefile
338550 biology/finchtv/Makefile
338550 biology/mafft/Makefile
338550 biology/mummer/Makefile
338550 biology/njplot/Makefile
338550 biology/p5-bioperl-run/Makefile
338550 biology/p5-bioperl/Makefile
338550 biology/paml/Makefile

(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
Convert biology to MDOCS and MEXAMPLES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
Fri, 26 Apr 2013
[ 16:23 bdrewery ] Original commit 
316622 biology/phd2fasta/Makefile
Remove unneeded escaping
Sun, 25 May 2008
[ 23:05 edwin ] Original commit 
1.2 biology/consed/Makefile
1.2 biology/phd2fasta/Makefile
1.2 biology/phrap/Makefile
1.2 biology/phred/Makefile
Teach the building cluster that these ports are not to be build
Sat, 24 May 2008
[ 07:01 edwin ] Original commit 
1.99 biology/Makefile
1.1 biology/phd2fasta/Makefile
1.1 biology/phd2fasta/distinfo
1.1 biology/phd2fasta/files/patch-Makefile
1.1 biology/phd2fasta/pkg-descr
New port: biology/consed viewing and editing workbench for sequence

        Consed is a tool for viewing, editing, and finishing sequence

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <>

Number of commits found: 5

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