boinc-simap 5.10.5.09_4 biology =0

Similarity Matrix of Proteins project for BOINC
Maintained by: pav@FreeBSD.org
Port Added: 19 Jun 2006 20:34:29
License: not specified in port

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SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It
contains about all currently published protein sequences and is continuously
updated.

The computational effort for keeping SIMAP up-to-date is constantly increasing.
Please help to update SIMAP by calculating protein similarities on your
computer.

WWW: http://boincsimap.org/boincsimap/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Run: net/boinc-client
Required Libraries: misc/compat6x
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/boinc-simap/ && make install clean
To add the package: pkg_add -r boinc-simap

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Configuration Options

===> The following configuration options are available for boinc-simap-5.10.5.09_4:
     SSE=off (default) "SSE optimized app (warning! your CPU must support SSE)"
===> Use 'make config' to modify these settings

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Master Sites:

http://boincsimap.org/boincsimap/download/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Adjust BOINC_* variables to be consistent with new system in boinc-client

- Fix fetch and update WWW

- Get Rid MD5 support

- Update the libmap instructions for amd64/8

Submitted by:   Rick van der Zwet <info@rickvanderzwet.nl>

- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi

- update to jpeg-8

- Annotate that 8.x no longer needs libmap hack

Reported by:    rene

- Remove conditional checks relevant only on FreeBSD 5.x and older

Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)

implement @dirrmtry macro for the pkg-plist

- Runs on 7.0-CURRENT with compat6x

Reported by:    Rene Ladan <r.c.ladan@gmail.com>

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

- Add hmmer 5.09 application

- Update to 5.10

- Provide SSE optimized application as an option

- Instruct amd64 users to libmap libpthread.so.2 to libc_r.so.6

SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It
contains about all currently published protein sequences and is continuously
updated.

The computational effort for keeping SIMAP up-to-date is constantly increasing.
Please help to update SIMAP by calculating protein similarities on your
computer.

WWW: http://boinc.bio.wzw.tum.de/boincsimap/

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

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