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Port details
boinc-simap 5.10.5.09_7 biology on this many watch lists=1 search for ports that depend on this port
Deprecated DEPRECATED: Project shutting down, see http://boincsimap.org/boincsimap/forum_thread.php?id=88
Expiration Date EXPIRATION DATE: 2015-01-01
Similarity Matrix of Proteins project for BOINC

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 19 Jun 2006 20:34:29
License: not specified in port


SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It
contains about all currently published protein sequences and is continuously
updated.

The computational effort for keeping SIMAP up-to-date is constantly increasing.
Please help to update SIMAP by calculating protein similarities on your
computer.

WWW: http://boincsimap.org/boincsimap/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required To Run:
  1. net/boinc-client
Required Libraries:
  1. misc/compat6x
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/boinc-simap/ && make install clean
To add the package: pkg install biology/boinc-simap


Configuration Options
===> The following configuration options are available for boinc-simap-5.10.5.09_7:
     SSE=off: Use SSE optimized routines
===> Use 'make config' to modify these settings

Master Sites:
  1. http://boincsimap.org/boincsimap/download/
  2. http://distcache.FreeBSD.org/ports-distfiles/

Number of commits found: 30

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
19 Sep 2014 23:05:45
Original commit files touched by this commit  5.10.5.09_7
Revision:368606
rene search for other commits by this committer
biology/boinc-simap: Deprecate, project shutting down on 2015-01-01

Obtained from:	http://boincsimap.org/boincsimap/forum_thread.php?id=88
10 Sep 2014 20:50:37
Original commit files touched by this commit  5.10.5.09_7
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
04 Feb 2014 17:54:29
Original commit files touched by this commit  5.10.5.09_6
Revision:342580
rene search for other commits by this committer
Drop maintainership BOINC ports, old machine running them gave up.
29 Dec 2013 10:41:50
Original commit files touched by this commit  5.10.5.09_6
Revision:337954
rene search for other commits by this committer
The hmmer binary was renamed upstream to indicate that it is now an
archive file, adjust the port so that fetch and extract work again.
23 Dec 2013 18:03:16
Original commit files touched by this commit  5.10.5.09_6
Revision:337273
rene search for other commits by this committer
Several fixes:
- install files as the BOINC user/group, this ensures that work units can
  be downloaded and sent
- try to remove ~boinc/projects if empty
- do not specify -o and -g parameters to ${INSTALL}, this ensures the
  package can be built as user
- only extract the hmmer binary from the hmmer distribution file, this
  ensures correct permissions when modifying app_info.xml as user
- Bump PORTREVISION

Reviewed by:	bapt
24 Sep 2013 12:00:40
Original commit files touched by this commit  5.10.5.09_5
Revision:328119
rene search for other commits by this committer
Use value of BOINC_CLIENT_HOME in pkg-message
23 Sep 2013 22:01:23
Original commit files touched by this commit  5.10.5.09_5
Revision:328069
rene search for other commits by this committer
- Add stagedir support
- Rewrap lines
23 Sep 2013 19:54:50
Original commit files touched by this commit  5.10.5.09_5
Revision:328033
rene search for other commits by this committer
Respect 'make check-sanity' for this port too.
20 Sep 2013 15:55:44
Original commit files touched by this commit  5.10.5.09_5
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
29 Apr 2013 12:20:35
Original commit files touched by this commit  5.10.5.09_5
Revision:316810
rene search for other commits by this committer
Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk
06 Mar 2013 23:31:58
Original commit files touched by this commit  5.10.5.09_5
Revision:313558
rene search for other commits by this committer
Remove compatibility with FreeBSD 7.X

While here pet Makefile headers.
28 Dec 2012 21:59:42
Original commit files touched by this commit  5.10.5.09_5
Revision:309592
rene search for other commits by this committer
Take over maintainership.

Approved by:	pav (previous maintainer)
27 Dec 2012 20:12:06
Original commit files touched by this commit  5.10.5.09_5
Revision:309554
rene search for other commits by this committer
Use the new project URL to let the application attach coorectly to the
project, and some cleanups:
- use optionsNG
- update commands in pkg-install.in
- improve %%AMD64%% comment handling
- convert Makefile header
- remove unused variable SIMAP_URL

Bump PORTREVISION

PR:		ports/174748
Submitted by:	myself
Approved by:	maintainer (pav@)
16 May 2012 13:46:30
Original commit files touched by this commit  5.10.5.09_4
pav search for other commits by this committer
- Adjust BOINC_* variables to be consistent with new system in boinc-client
04 Nov 2011 20:39:12
Original commit files touched by this commit  5.10.5.09_4
pav search for other commits by this committer
- Fix fetch and update WWW
19 Mar 2011 12:38:54
Original commit files touched by this commit  5.10.5.09_4
miwi search for other commits by this committer
- Get Rid MD5 support
29 Jul 2010 08:30:24
Original commit files touched by this commit  5.10.5.09_4
pav search for other commits by this committer
- Update the libmap instructions for amd64/8

Submitted by:   Rick van der Zwet <info@rickvanderzwet.nl>
28 Mar 2010 06:47:48
Original commit files touched by this commit  5.10.5.09_4
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
05 Feb 2010 11:46:55
Original commit files touched by this commit  5.10.5.09_3
dinoex search for other commits by this committer
- update to jpeg-8
01 Oct 2009 07:34:28
Original commit files touched by this commit  5.10.5.09_2
pav search for other commits by this committer
- Annotate that 8.x no longer needs libmap hack

Reported by:    rene
05 Jan 2009 17:27:29
Original commit files touched by this commit  5.10.5.09_2
pav search for other commits by this committer
- Remove conditional checks relevant only on FreeBSD 5.x and older
06 Jun 2008 13:08:29
Original commit files touched by this commit  5.10.5.09_2
edwin search for other commits by this committer
Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)
19 Apr 2008 00:24:21
Original commit files touched by this commit  5.10.5.09_1
edwin search for other commits by this committer
implement @dirrmtry macro for the pkg-plist
08 Jul 2007 11:56:59
Original commit files touched by this commit  5.10.5.09_1
pav search for other commits by this committer
- Runs on 7.0-CURRENT with compat6x

Reported by:    Rene Ladan <r.c.ladan@gmail.com>
19 May 2007 20:32:57
Original commit files touched by this commit  5.10.5.09_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
10 Oct 2006 11:31:42
Original commit files touched by this commit  5.10.5.09
pav search for other commits by this committer
- Add hmmer 5.09 application
17 Jul 2006 21:44:52
Original commit files touched by this commit  5.10
pav search for other commits by this committer
- Update to 5.10
24 Jun 2006 21:04:45
Original commit files touched by this commit  5.08
pav search for other commits by this committer
- Provide SSE optimized application as an option
22 Jun 2006 18:53:30
Original commit files touched by this commit  5.08
pav search for other commits by this committer
- Instruct amd64 users to libmap libpthread.so.2 to libc_r.so.6
19 Jun 2006 20:32:08
Original commit files touched by this commit  5.08
pav search for other commits by this committer
SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It
contains about all currently published protein sequences and is continuously
updated.

The computational effort for keeping SIMAP up-to-date is constantly increasing.
Please help to update SIMAP by calculating protein similarities on your
computer.

WWW: http://boinc.bio.wzw.tum.de/boincsimap/

Number of commits found: 30

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