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Port details
boinc-simap Similarity Matrix of Proteins project for BOINC
5.10.5.09_7 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 5.10.5.09_7Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Project shutting down, see http://boincsimap.org/boincsimap/forum_thread.php?id=88
Expired This port expired on: 2015-01-01
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-06-19 20:34:29
Last Update: 2015-01-01 01:13:13
SVN Revision: 375913
License: not specified in port
WWW:
http://boincsimap.org/boincsimap/
Description:
SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated protein similarities that plays a key role in many bioinformatics methods. It contains about all currently published protein sequences and is continuously updated. The computational effort for keeping SIMAP up-to-date is constantly increasing. Please help to update SIMAP by calculating protein similarities on your computer. WWW: http://boincsimap.org/boincsimap/
Homepage    cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • boinc-simap>0:biology/boinc-simap
No installation instructions:
This port has been deleted.
PKGNAME: boinc-simap
Flavors: there is no flavor information for this port.
ONLY_FOR_ARCHS: i386 amd64
distinfo:
There is no distinfo for this port.

No package information for this port in our database
Sometimes this happens. Not all ports have packages.
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Runtime dependencies:
  1. boinc_client : net/boinc-client
Library dependencies:
  1. libc.so.6 : misc/compat6x
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for boinc-simap-5.10.5.09_7: SSE=off: Use SSE optimized routines ===> Use 'make config' to modify these settings
Options name:
N/A
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. http://boincsimap.org/boincsimap/download/
  2. http://distcache.FreeBSD.org/ports-distfiles/
Collapse this list.

Number of commits found: 33

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
5.10.5.09_7
01 Jan 2015 01:13:13
Revision:375913Original commit files touched by this commit
rene search for other commits by this committer
Remove expired ports:
2015-01-01 biology/boinc-simap: Project shutting down, see
http://boincsimap.org/boincsimap/forum_thread.php?id=88
2015-01-01 security/openssh-portable-base: Overwrite-base option/port/pkg will
be removed. There is no real need for foot-shooting.
2015-01-01 devel/cedet: Fails to build, use Emacs' builtin cedet package instead
2015-01-01 devel/ecb: does not work with newer Emacs versions, use the elpa
package instead
5.10.5.09_7
08 Oct 2014 10:06:04
Revision:370429Original commit files touched by this commit
rene search for other commits by this committer
Fix pkg-plist

Submitted by:	bapt
5.10.5.09_7
08 Oct 2014 09:25:34
Revision:370428Original commit files touched by this commit
rene search for other commits by this committer
biology/boinc-simap: clean up pkg-plist

Requested by:	bapt
5.10.5.09_7
19 Sep 2014 23:05:45
Revision:368606Original commit files touched by this commit
rene search for other commits by this committer
biology/boinc-simap: Deprecate, project shutting down on 2015-01-01

Obtained from:	http://boincsimap.org/boincsimap/forum_thread.php?id=88
5.10.5.09_7
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
5.10.5.09_6
04 Feb 2014 17:54:29
Revision:342580Original commit files touched by this commit
rene search for other commits by this committer
Drop maintainership BOINC ports, old machine running them gave up.
5.10.5.09_6
29 Dec 2013 10:41:50
Revision:337954Original commit files touched by this commit
rene search for other commits by this committer
The hmmer binary was renamed upstream to indicate that it is now an
archive file, adjust the port so that fetch and extract work again.
5.10.5.09_6
23 Dec 2013 18:03:16
Revision:337273Original commit files touched by this commit
rene search for other commits by this committer
Several fixes:
- install files as the BOINC user/group, this ensures that work units can
  be downloaded and sent
- try to remove ~boinc/projects if empty
- do not specify -o and -g parameters to ${INSTALL}, this ensures the
  package can be built as user
- only extract the hmmer binary from the hmmer distribution file, this
  ensures correct permissions when modifying app_info.xml as user
- Bump PORTREVISION

Reviewed by:	bapt
5.10.5.09_5
24 Sep 2013 12:00:40
Revision:328119Original commit files touched by this commit
rene search for other commits by this committer
Use value of BOINC_CLIENT_HOME in pkg-message
5.10.5.09_5
23 Sep 2013 22:01:23
Revision:328069Original commit files touched by this commit
rene search for other commits by this committer
- Add stagedir support
- Rewrap lines
5.10.5.09_5
23 Sep 2013 19:54:50
Revision:328033Original commit files touched by this commit
rene search for other commits by this committer
Respect 'make check-sanity' for this port too.
5.10.5.09_5
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
5.10.5.09_5
29 Apr 2013 12:20:35
Revision:316810Original commit files touched by this commit
rene search for other commits by this committer
Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk
5.10.5.09_5
06 Mar 2013 23:31:58
Revision:313558Original commit files touched by this commit
rene search for other commits by this committer
Remove compatibility with FreeBSD 7.X

While here pet Makefile headers.
5.10.5.09_5
28 Dec 2012 21:59:42
Revision:309592Original commit files touched by this commit
rene search for other commits by this committer
Take over maintainership.

Approved by:	pav (previous maintainer)
5.10.5.09_5
27 Dec 2012 20:12:06
Revision:309554Original commit files touched by this commit
rene search for other commits by this committer
Use the new project URL to let the application attach coorectly to the
project, and some cleanups:
- use optionsNG
- update commands in pkg-install.in
- improve %%AMD64%% comment handling
- convert Makefile header
- remove unused variable SIMAP_URL

Bump PORTREVISION

PR:		ports/174748
Submitted by:	myself
Approved by:	maintainer (pav@)
5.10.5.09_4
16 May 2012 13:46:30
Original commit files touched by this commit
pav search for other commits by this committer
- Adjust BOINC_* variables to be consistent with new system in boinc-client
5.10.5.09_4
04 Nov 2011 20:39:12
Original commit files touched by this commit
pav search for other commits by this committer
- Fix fetch and update WWW
5.10.5.09_4
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
5.10.5.09_4
29 Jul 2010 08:30:24
Original commit files touched by this commit
pav search for other commits by this committer
- Update the libmap instructions for amd64/8

Submitted by:   Rick van der Zwet <info@rickvanderzwet.nl>
5.10.5.09_4
28 Mar 2010 06:47:48
Original commit files touched by this commit
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
5.10.5.09_3
05 Feb 2010 11:46:55
Original commit files touched by this commit
dinoex search for other commits by this committer
- update to jpeg-8
5.10.5.09_2
01 Oct 2009 07:34:28
Original commit files touched by this commit
pav search for other commits by this committer
- Annotate that 8.x no longer needs libmap hack

Reported by:    rene
5.10.5.09_2
05 Jan 2009 17:27:29
Original commit files touched by this commit
pav search for other commits by this committer
- Remove conditional checks relevant only on FreeBSD 5.x and older
5.10.5.09_2
06 Jun 2008 13:08:29
Original commit files touched by this commit
edwin search for other commits by this committer
Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)
5.10.5.09_1
19 Apr 2008 00:24:21
Original commit files touched by this commit
edwin search for other commits by this committer
implement @dirrmtry macro for the pkg-plist
5.10.5.09_1
08 Jul 2007 11:56:59
Original commit files touched by this commit
pav search for other commits by this committer
- Runs on 7.0-CURRENT with compat6x

Reported by:    Rene Ladan <r.c.ladan@gmail.com>
5.10.5.09_1
19 May 2007 20:32:57
Original commit files touched by this commit
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
5.10.5.09
10 Oct 2006 11:31:42
Original commit files touched by this commit
pav search for other commits by this committer
- Add hmmer 5.09 application
5.10
17 Jul 2006 21:44:52
Original commit files touched by this commit
pav search for other commits by this committer
- Update to 5.10
5.08
24 Jun 2006 21:04:45
Original commit files touched by this commit
pav search for other commits by this committer
- Provide SSE optimized application as an option
5.08
22 Jun 2006 18:53:30
Original commit files touched by this commit
pav search for other commits by this committer
- Instruct amd64 users to libmap libpthread.so.2 to libc_r.so.6
5.08
19 Jun 2006 20:32:08
Original commit files touched by this commit
pav search for other commits by this committer
SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It
contains about all currently published protein sequences and is continuously
updated.

The computational effort for keeping SIMAP up-to-date is constantly increasing.
Please help to update SIMAP by calculating protein similarities on your
computer.

WWW: http://boinc.bio.wzw.tum.de/boincsimap/

Number of commits found: 33