77f5 FreshPorts -- biology/boinc-simap
FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

Port details
boinc-simap 5.10.5.09_5 biology on this many watch lists=1 search for ports that depend on this port
Similarity Matrix of Proteins project for BOINC
Maintained by: rene@FreeBSD.org search for ports maintained by this maintainer
Port Added: 19 Jun 2006 20:34:29
License: not specified in port


SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It
contains about all currently published protein sequences and is continuously
updated.

The computational effort for keeping SIMAP up-to-date is constantly increasing.
Please help to update SIMAP by calculating protein similarities on your
computer.

WWW: http://boincsimap.org/boincsimap/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Run:
  1. net/boinc-client
Required Libraries:
  1. misc/compat6x
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/boinc-simap/ && make install clean
To add the package: pkg_add -r boinc-simap


Configuration Options
===> The following configuration options are available for boinc-simap-5.10.5.09_5:
     SSE=off: Use SSE optimized routines
===> Use 'make config' to modify these settings

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://boincsimap.org/boincsimap/download/

Number of commits found: 21

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
29 Apr 2013 12:20:35
Original commit files touched by this commit  5.10.5.09_5
rene search for other commits by this committer
Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk
06 Mar 2013 23:31:58
Original commit files touched by this commit  5.10.5.09_5
rene search for other commits by this committer
Remove compatibility with FreeBSD 7.X

While here pet Makefile headers.
28 Dec 2012 21:59:42
Original commit files touched by this commit  5.10.5.09_5
rene search for other commits by this committer
Take over maintainership.

Approved by:	pav (previous maintainer)
27 Dec 2012 20:12:06
Original commit files touched by this commit  5.10.5.09_5
rene search for other commits by this committer
Use the new project URL to let the application attach coorectly to the
project, and some cleanups:
- use optionsNG
- update commands in pkg-install.in
- improve %%AMD64%% comment handling
- convert Makefile header
- remove unused variable SIMAP_URL

Bump PORTREVISION

PR:		ports/174748
Submitted by:	myself
Approved by:	maintainer (pav@)
16 May 2012 13:46:30
Original commit files touched by this commit  5.10.5.09_4
pav search for other commits by this committer
- Adjust BOINC_* variables to be consistent with new system in boinc-client
04 Nov 2011 20:39:12
Original commit files touched by this commit  5.10.5.09_4
pav search for other commits by this committer
- Fix fetch and update WWW
19 Mar 2011 12:38:54
Original commit files touched by this commit  5.10.5.09_4
miwi search for other commits by this committer
- Get Rid MD5 support
29 Jul 2010 08:30:24
Original commit files touched by this commit  5.10.5.09_4
pav search for other commits by this committer
- Update the libmap instructions for amd64/8

Submitted by:   Rick van der Zwet <info@rickvanderzwet.nl>
28 Mar 2010 06:47:48
Original commit files touched by this commit  5.10.5.09_4
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
05 Feb 2010 11:46:55
Original commit files touched by this commit  5.10.5.09_3
dinoex search for other commits by this committer
- update to jpeg-8
01 Oct 2009 07:34:28
Original commit files touched by this commit  5.10.5.09_2
pav search for other commits by this committer
- Annotate that 8.x no longer needs libmap hack

Reported by:    rene
05 Jan 2009 17:27:29
Original commit files touched by this commit  5.10.5.09_2
pav search for other commits by this committer
- Remove conditional checks relevant only on FreeBSD 5.x and older
06 Jun 2008 13:08:29
Original commit files touched by this commit  5.10.5.09_2
edwin search for other commits by this committer
Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)
19 Apr 2008 00:24:21
Original commit files touched by this commit  5.10.5.09_1
edwin search for other commits by this committer
implement @dirrmtry macro for the pkg-plist
08 Jul 2007 11:56:59
Original commit files touched by this commit  5.10.5.09_1
pav search for other commits by this committer
- Runs on 7.0-CURRENT with compat6x

Reported by:    Rene Ladan <r.c.ladan@gmail.com>
19 May 2007 20:32:57
Original commit files touched by this commit  5.10.5.09_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
10 Oct 2006 11:31:42
Original commit files touched by this commit  5.10.5.09
pav search for other commits by this committer
- Add hmmer 5.09 application
17 Jul 2006 21:44:52
Original commit files touched by this commit  5.10
pav search for other commits by this committer
- Update to 5.10
24 Jun 2006 21:04:45
Original commit files touched by this commit  5.08
pav search for other commits by this committer
- Provide SSE optimized application as an option
22 Jun 2006 18:53:30
Original commit files touched by this commit  5.08
pav search for other commits by this committer
- Instruct amd64 users to libmap libpthread.so.2 to libc_r.so.6
19 Jun 2006 20:32:08
Original commit files touched by this commit  5.08
pav search for other commits by this committer
SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It
contains about all currently published protein sequences and is continuously
updated.

The computational effort for keeping SIMAP up-to-date is constantly increasing.
Please help to update SIMAP by calculating protein similarities on your
computer.

WWW: http://boinc.bio.wzw.tum.de/boincsimap/

Number of commits found: 21

285d
Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
couchdbMay 26
otrsMay 23
otrsMay 23
otrsMay 23
otrsMay 23
chromiumMay 22
chromiumMay 22
firefox*May 21
firefox-devel*May 21
firefox-esr*May 21
firefox10*May 21
firefox15*May 21
firefox3*May 21
firefox3-devel*May 21
firefox35*May 21

9 vulnerabilities affecting 25 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24543
Broken 216
Deprecated 487
Ignore 633
Forbidden 2
Restricted 292
No CDROM 109
Vulnerable 26
Expired 123
Set to expire 525
Interactive 33
new 24 hours 12
new 48 hours15
new 7 days38
new fortnight62
new month226

This site
What is FreshPorts?
About the Authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact
8e7

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2013 DVL Software Limited. All rights reserved.
0