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Category listing - biology
Click to add this to your default watch list[s] Software related to biology.- Number of ports in this category: 101

Ports marked with a * actually reside within another category but have biology listed as a secondary category.


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InsightToolkit 2.8.1_2* search for ports that depend on this port
Insight Toolkit
Maintained by: jwbacon@tds.net search for ports maintained by this maintainer
Port Added: 07 Sep 2006 03:14:06
Also Listed In: science
License: not specified in port
adun 0.81_1 search for ports that depend on this port
Molecular Simulator for GNUstep
Maintained by: dinoex@FreeBSD.org search for ports maintained by this maintainer
Port Added: 09 Nov 2006 20:37:38
Also Listed In: gnustep
License: GPLv2
afni 2008.01.02.1043_6* search for ports that depend on this port
Advanced Functional Neuro Imaging
Maintained by: jwbacon@tds.net search for ports maintained by this maintainer
Port Added: 25 Jan 2006 17:37:44
Also Listed In: science graphics
License: not specified in port
ariadne 1.3 search for ports that depend on this port
Programs to compare protein sequences and profiles
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 22 Jun 2004 14:31:00
License: not specified in port
artemis 9_1 search for ports that depend on this port
A DNA sequence viewer and annotation tool
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 22 Dec 2001 11:39:40
Also Listed In: java
License: not specified in port
avida 2.10.0 search for ports that depend on this port
Avida is an auto-adaptive genetic system designed for ALife research
Maintained by: cs@FreeBSD.org search for ports maintained by this maintainer
Port Added: 20 Apr 2002 15:17:56
License: GPLv2
babel 1.6_3 search for ports that depend on this port
Converts among various molecular file formats

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
Also Listed In: converters
License: not specified in port
belvu 2.29 search for ports that depend on this port
Ignore IGNORE: there are also executables for Alpha and Sparc but they are for OSF and Solaris ... do they run on FreeBSD-Sparc and FreeBSD-alpha?
A viewer for multiple sequence alignments
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 15 Mar 2006 10:28:54
License: not specified in port
biococoa 1.6.0_2 search for ports that depend on this port
Bioinformatics framework
Maintained by: dinoex@FreeBSD.org search for ports maintained by this maintainer
Port Added: 30 Dec 2006 09:21:22
Also Listed In: gnustep
License: LGPL21
biojava 1.7,1 search for ports that depend on this port
Open-source java tools for processing biological data
Maintained by: wenheping@gmail.com search for ports maintained by this maintainer
Port Added: 10 Oct 2000 08:14:04
Also Listed In: java
License: not specified in port
blast 2.0_20060322 search for ports that depend on this port
Ignore IGNORE: You must manually fetch wu-blast2 for the FreeBSD platform (blast2.freebsd-6.x-x64.tar.Z) from http://blast.wustl.edu/licensing, place it in /usr/ports/distfiles and then run make again
Restricted RESTRICTED: License does not allow redistribution of binaries. You should first register for the software, which is free for academic use.
WU BLAST, a software package for sequence similarity searches
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 11 Nov 2004 21:47:25
License: not specified in port
blat 34 search for ports that depend on this port
A fast tool for local sequence similarity searches
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 15 Mar 2006 10:29:12
License: not specified in port
boinc-simap 5.10.5.09_4 search for ports that depend on this port
Similarity Matrix of Proteins project for BOINC
Maintained by: pav@FreeBSD.org search for ports maintained by this maintainer
Port Added: 19 Jun 2006 20:34:29
License: not specified in port
chemeq 1.50_1 search for ports that depend on this port
Outputs LaTeX code for chemical reaction

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Jul 2000 00:14:19
Also Listed In: textproc
License: not specified in port
clustalw 2.1_1 search for ports that depend on this port
Restricted RESTRICTED: No commercial use.
A multiple alignment program for DNA or proteins
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Jul 2000 00:17:41
License: not specified in port
consed 16.0 search for ports that depend on this port
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request access permission via e-mail to get the tarball. Free for academic use.
A graphical tool for editing Phrap assemblies
Maintained by: mzaki@biol.s.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 24 May 2008 07:01:28
License: not specified in port
crux 1.2.0_1 search for ports that depend on this port
Software toolkit for phylogenetic inference
Maintained by: jasone@FreeBSD.org search for ports maintained by this maintainer
Port Added: 08 Jun 2009 23:51:06
Also Listed In: python
License: not specified in port
cycle 0.3.1_5* search for ports that depend on this port
A calendar program for women

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 30 Jun 2005 14:05:46
Also Listed In: deskutils python
License: GPLv2
dna-qc 1993.07.26 search for ports that depend on this port
A quality control algorithm for DNA sequencing projects

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 19 Dec 2001 00:20:48
License: not specified in port
dotter 20021204 search for ports that depend on this port
Ignore IGNORE: is only for i386, while you are running amd64
A viewer for multiple sequence alignments
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 15 Mar 2006 10:36:50
License: not specified in port
dtiquery 1.1_5* search for ports that depend on this port
Ignore IGNORE: you must manually fetch dtiquery-1.1.tar.gz from http://graphics.stanford.edu/projects/dti/, place it in /usr/ports/distfiles, and then run make again
Restricted RESTRICTED: Must register to download at http://graphics.stanford.edu/projects/dti/
Stanford DTI Visualization tool
Maintained by: jwbacon@tds.net search for ports maintained by this maintainer
Port Added: 25 Feb 2008 12:56:30
Also Listed In: science
License: not specified in port
embassy 6.2.0_1 search for ports that depend on this port
A collection of contributed EMBOSS applications
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 26 Nov 2004 16:35:20
License: not specified in port
emboss 6.2.0_1 search for ports that depend on this port
A collection of open source tools for genetic sequence analysis
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 31 Jul 2000 16:13:54
License: not specified in port
fasta 21.1.1 search for ports that depend on this port
NO CDROM NO CDROM: May not be sold or incorporated into a commercial product
A collection of programs for searching DNA and protein databases

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 11 Feb 2001 13:24:20
License: not specified in port
fasta3 36.3.2 search for ports that depend on this port
NO CDROM NO CDROM: May not be sold or incorporated into a commercial product
A collection of programs for searching DNA and protein databases
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 11 Feb 2001 13:29:00
License: not specified in port
fastdnaml 1.2.2_2 search for ports that depend on this port
Faster DNAML, makes phylogenetic trees using maximum likelihood

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 12 Oct 2000 09:31:14
License: GPLv2
finchtv 1.3.1 search for ports that depend on this port
Ignore IGNORE: is only for i386, while you are running amd64
A chromatogram trace viewer
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 11 Mar 2005 21:16:55
License: not specified in port
fluctuate 1.40 search for ports that depend on this port
A program to fit population models

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 06 Aug 2001 11:45:39
License: not specified in port
garlic 1.6 search for ports that depend on this port
Molecular viewer, editor and visualization program
Maintained by: maho@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 Jul 2003 06:41:18
License: not specified in port
genpak 0.26_7 search for ports that depend on this port
A set of small utilities to manipulate DNA sequences

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 27 Feb 2001 23:46:53
License: not specified in port
gff2ps 0.98d_2 search for ports that depend on this port
Converts gff-formated genomic data-sets to PostScript

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 19 Dec 2001 07:03:28
License: not specified in port
gmap 2006.04.21 search for ports that depend on this port
A Genomic Mapping and Alignment Program for mRNA and EST Sequences
Maintained by: rpz@cse.wustl.edu search for ports maintained by this maintainer
Port Added: 29 Sep 2006 04:09:50
License: not specified in port
gperiodic 2.0.10_6 search for ports that depend on this port
Displays a periodic table of the elements

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
grappa 2.0 search for ports that depend on this port
Genome Rearrangements Analysis and Phylogeny Software

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 04 Jul 2001 05:39:40
License: not specified in port
hmmer 2.3.2 search for ports that depend on this port
Profile hidden Markov models for biological sequence analysis
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
iolib 1.12.5 search for ports that depend on this port
A general purpose trace file(and Experiment File) reading interface
Maintained by: culot@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 Aug 2009 23:34:46
License: BSD
jalview 2.07_2 search for ports that depend on this port
A viewer and editor for multiple sequence alignments
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 13 Feb 2006 09:43:01
Also Listed In: java
License: not specified in port
lagan 1.2 search for ports that depend on this port
Efficient tools for large-scale multiple alignments of genomic DNA
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 16 Mar 2006 22:31:50
License: not specified in port
lamarc 2.1.5,1 search for ports that depend on this port
A package of programs for computing population parameters
Maintained by: cs@FreeBSD.org search for ports maintained by this maintainer
Port Added: 07 Aug 2001 05:17:58
License: AL2
libgenome 0.5.2_1 search for ports that depend on this port
Toolkit for developing bioinformatic related software in C++

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 30 Jul 2002 10:57:35
License: not specified in port
libsbml 4.2.0 search for ports that depend on this port
An API Library for Working with SBML File
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 May 2009 23:36:42
Also Listed In: devel
License: not specified in port
linux-foldingathome 5.04 search for ports that depend on this port
Distributed client for Protein Folding
Maintained by: onatan@gmail.com search for ports maintained by this maintainer
Port Added: 28 Aug 2006 22:34:01
License: not specified in port
mafft 5.743 search for ports that depend on this port
Multiple sequence alignments based on fast Fourier transform
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 15 Mar 2006 10:41:45
License: not specified in port
mapm3 3.0 search for ports that depend on this port
Constructs linkage maps of markers segregating in experimental crosses
Maintained by: tphilipp@potion-studios.com search for ports maintained by this maintainer
Port Added: 06 Apr 2008 04:49:23
License: not specified in port
migrate 3.1.6 search for ports that depend on this port
A program to estimate population sizes and migration rates
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 06 Aug 2001 10:07:46
License: not specified in port
minc 1.4_2* search for ports that depend on this port
Medical Imaging NetCDF
Maintained by: jwbacon@tds.net search for ports maintained by this maintainer
Port Added: 12 Feb 2006 15:31:05
Also Listed In: science
License: not specified in port
minc2 2.0.09_1* search for ports that depend on this port
Medical Imaging NetCDF
Maintained by: jwbacon@tds.net search for ports maintained by this maintainer
Port Added: 30 Apr 2006 12:09:06
Also Listed In: science
License: not specified in port
molden 4.6_2,1 search for ports that depend on this port
Restricted RESTRICTED: free for academic, non profit usage; do not re-distribute source and executable.
Display molecular orbitals and electron densities in 2D and 3D
Maintained by: oivulf@gmail.com search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
mopac 7.1.11_1,1 search for ports that depend on this port
Semi-empirical (MNDO, etc.) molecular orbital calculation

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
mrbayes 3.1.2_1 search for ports that depend on this port
Bayesian inference of phylogeny
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 15 Dec 2007 15:13:49
License: not specified in port
mummer 3.23 search for ports that depend on this port
A modular system for rapid whole genome alignment
Maintained by: sylvio@FreeBSD.org search for ports maintained by this maintainer
Port Added: 14 Dec 2007 20:56:11
License: not specified in port
muscle 3.6 search for ports that depend on this port
MUltiple Sequence Comparison by Log-Expectation
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 14 May 2008 13:52:50
License: not specified in port
ncbi-toolkit 2009.03.01_1 search for ports that depend on this port
NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 29 Oct 2000 10:56:24
License: not specified in port
njplot 2.1_2 search for ports that depend on this port
Phylogenetic tree drawing program capable of interactive manipulation
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 14 May 2008 14:07:25
License: not specified in port
ortep3 1.0.3_5 search for ports that depend on this port
The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure

There is no maintainer for this port.
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Port Added: unknown
License: not specified in port
p5-AcePerl 1.92_2 search for ports that depend on this port
Perl5 interface to the ACEDB genome database system
Maintained by: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 Jul 2000 10:16:10
Also Listed In: databases perl5
License: not specified in port
p5-Bio-ASN1-EntrezGene 1.091 search for ports that depend on this port
Regular expression-based Perl Parser for NCBI Entrez Gene
Maintained by: mauricio@arareko.net search for ports maintained by this maintainer
Port Added: 15 Oct 2005 20:11:03
Also Listed In: perl5
License: not specified in port
p5-Bio-Das 1.17_1 search for ports that depend on this port
Client-side library for Distributed Genome Annotation System
Maintained by: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 01 Sep 2005 13:10:39
Also Listed In: perl5
License: not specified in port
p5-Bio-Das-Lite 2.11 search for ports that depend on this port
Perl extension for the DAS (HTTP+XML) Protocol
Maintained by: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 01 Mar 2010 09:16:56
Also Listed In: perl5
License: not specified in port
p5-Bio-GFF3 0.7 search for ports that depend on this port
Fast, low-level functions for parsing and formatting GFF3
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 22 Apr 2011 08:51:49
Also Listed In: perl5
License: not specified in port
p5-Bio-Glite 0.10_1 search for ports that depend on this port
An Perl Interface to G-language
Maintained by: wenheping@gmail.com search for ports maintained by this maintainer
Port Added: 02 Apr 2009 18:25:38
Also Listed In: perl5
License: not specified in port
p5-Bio-Graphics 2.26 search for ports that depend on this port
Generate GD Images of Bio::Seq Objects
Maintained by: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Mar 2009 18:52:27
Also Listed In: perl5
License: ART10 GPLv1
p5-Bio-MAGETAB 1.22 search for ports that depend on this port
A data model and utility API for the MAGE-TAB format
Maintained by: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 01 Jul 2009 09:03:56
Also Listed In: perl5
License: not specified in port
p5-Bio-NEXUS 0.78 search for ports that depend on this port
An object-oriented Perl API for the NEXUS file format
Maintained by: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 22 Aug 2009 20:40:26
Also Listed In: perl5
License: not specified in port
p5-Bio-Phylo 0.45 search for ports that depend on this port
Phylogenetic analysis using perl
Maintained by: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 13 May 2006 16:50:16
Also Listed In: perl5
License: ART10 GPLv1
p5-Bio-SCF 1.03 search for ports that depend on this port
Read and Update SCF Chromatographic Sequence Files
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 Aug 2009 23:38:55
Also Listed In: perl5
License: not specified in port
p5-bioperl 1.6.1_3 search for ports that depend on this port
A collection of Perl modules for bioinformatics
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 28 Jul 2000 11:06:03
Also Listed In: perl5
License: not specified in port
p5-bioperl-run 1.6.1_3 search for ports that depend on this port
Wrapper modules for common bioinformatics tools
Maintained by: mauricio@arareko.net search for ports maintained by this maintainer
Port Added: 02 May 2006 21:32:38
Also Listed In: perl5
License: not specified in port
paml 4.4c search for ports that depend on this port
Phylogenetic Analysis by Maximum Likelihood (PAML)
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Jul 2000 00:21:06
License: not specified in port
phd2fasta 0.990622.f search for ports that depend on this port
Ignore IGNORE: you must request the source code \(phd2fasta-acd-dist.tar.Z\) via e-mail, place it manually in /usr/ports/distfiles, and then try it again
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
A converter from output files of Phred/Consed to FASTA files
Maintained by: mzaki@biol.s.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 24 May 2008 07:02:33
License: not specified in port
phrap 0.990329 search for ports that depend on this port
Ignore IGNORE: you must request the source code \(distrib.tar.Z\) via e-mail, place it manually in /usr/ports/distfiles/phrap, and then try it again
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Phrap is a program for assembling shotgun DNA sequence data
Maintained by: mzaki@biol.s.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 24 May 2008 07:03:43
License: not specified in port
phred 0.020425.c search for ports that depend on this port
Restricted RESTRICTED: Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
Base calling and quality value assignment on DNA sequencing
Maintained by: mzaki@biol.s.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 24 May 2008 07:05:09
License: not specified in port
phylip 3.69,1 search for ports that depend on this port
A Phylogeny Inference Package

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Jul 2000 00:25:48
License: not specified in port
phyml 20090706 search for ports that depend on this port
A simple, fast, and accurate algorithm to estimate large phylogenies
Maintained by: ben@sysadminschronicles.com search for ports maintained by this maintainer
Port Added: 21 Jul 2009 01:10:33
License: not specified in port
platon 2007.01.09_5 search for ports that depend on this port
Restricted RESTRICTED: free for academic, US5000 for commercial users
Tool for viewing molecular/crystallographic structures

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
povchem 1.0_6 search for ports that depend on this port
Simple yet powerful tool to generate POV from a PDB file

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
Also Listed In: graphics
License: not specified in port
primer3 1.1.4 search for ports that depend on this port
Primer3 helps to choose primers for PCR reactions
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 17 Sep 2002 15:31:31
License: not specified in port
protomol 2.0.3_6 search for ports that depend on this port
OO, component based, framework for molecular dynamics (MD) simulations
Maintained by: sangwoos@gmail.com search for ports maintained by this maintainer
Port Added: 05 May 2006 20:12:57
License: not specified in port
psi88 1.0_3 search for ports that depend on this port
Plotting wavefunctions (molecular orbitals) in 3D

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
py-biopython 1.57 search for ports that depend on this port
A collection of Python modules for bioinformatics
Maintained by: mauricio@arareko.net search for ports maintained by this maintainer
Port Added: 31 Jul 2000 09:12:24
Also Listed In: python
License: not specified in port
pycogent 1.5.1 search for ports that depend on this port
A toolkit for statistical analysis of biological sequences
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 22 Jun 2009 12:47:26
Also Listed In: python
License: not specified in port
pyfasta 0.4.4 search for ports that depend on this port
Fast, memory-efficient, pythonic access to fasta sequence files
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 18 Nov 2009 05:53:48
Also Listed In: python
License: not specified in port
pymol 1.4.1.3946 search for ports that depend on this port
Free and Open-Source molecular modeling system
Maintained by: maho@FreeBSD.org search for ports maintained by this maintainer
Port Added: 13 Aug 2002 11:53:54
Also Listed In: python
License: not specified in port
python-nexus 0.87 search for ports that depend on this port
A generic nexus file format reader for python
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 29 Dec 2009 13:39:49
Also Listed In: python
License: not specified in port
rasmol 2.7.2.1.1_3 search for ports that depend on this port
Fast Molecular Visualization Program

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
raster3d 3.0.2* search for ports that depend on this port
A set of tools for generating raster images of proteins and molecules

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 Apr 2006 14:21:11
Also Listed In: graphics
License: ART20
recombine 1.41 search for ports that depend on this port
A program to fit population models across sites

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 06 Aug 2001 11:49:53
License: not specified in port
ruby-bio 1.4.1 search for ports that depend on this port
Integrated environment for Bioinformatics written in Ruby
Maintained by: mauricio@arareko.net search for ports maintained by this maintainer
Port Added: 24 Oct 2001 03:21:52
Also Listed In: ruby
License: not specified in port
seaview 2006.02.13_8 search for ports that depend on this port
Multiple DNA/protein sequence alignment editor
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
seqio 1.2.2_1 search for ports that depend on this port
A set of C functions which can read/write biological sequence files

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 22 Aug 2001 09:07:26
License: not specified in port
sim4 2003.09.21 search for ports that depend on this port
An algorithm for aligning expressed DNA with genomic sequences

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 27 Jul 2000 11:33:01
License: not specified in port
ssaha 3.1c_1 search for ports that depend on this port
Very fast matching and alignment of DNA sequences
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 21 Jun 2008 00:02:14
License: not specified in port
tRNAscan-SE 1.23_1 search for ports that depend on this port
An improved tool for transfer RNA detection

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 27 Mar 2002 14:19:04
License: not specified in port
t_coffee 5.68 search for ports that depend on this port
A multiple DNA or protein sequence alignment package
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 25 Jan 2002 11:58:16
License: not specified in port
tinker 5.1.09 search for ports that depend on this port
Restricted RESTRICTED: author requests no distribution except from his FTP site
A general purpose molecular modelling package

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: not specified in port
treepuzzle 5.2 search for ports that depend on this port
Maximum likelihood phylogeny reconstruction using quartets
Maintained by: jan.lentfer@web.de search for ports maintained by this maintainer
Port Added: 20 Nov 2002 09:04:07
License: not specified in port
treeviewx 0.5.1_6 search for ports that depend on this port
A phylogenetic tree viewer
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 17 Aug 2001 05:39:29
License: not specified in port
velvet 1.1.04 search for ports that depend on this port
Sequence assembler for very short reads
Maintained by: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 07 Nov 2009 01:24:24
License: not specified in port
wise 2.2.0 search for ports that depend on this port
Intelligent algorithms for DNA searches

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Sep 2002 13:59:05
License: not specified in port
xdrawchem 1.9.9_9 search for ports that depend on this port
Chemical drawing program
Maintained by: hemi@puresimplicity.net search for ports maintained by this maintainer
Port Added: 19 Jul 2000 10:23:02
License: not specified in port

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