fastdnaml 1.2.2_1 biology =0

Faster DNAML, makes phylogenetic trees using maximum likelihood

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
Port Added: 12 Oct 2000 10:31:14

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fastDNAml is a program for estimating maximum likelihood phylogenetic trees
from nucleotide sequences. 

WWW: http://geta.life.uiuc.edu/~gary/programs/fastDNAml.html

fastDNAml is an attempt to solve the same problem as Joseph Felsenstein's
DNAML, but to do so faster and using less memory, so that larger trees and/or
more bootstrap replicates become tractable. Much of fastDNAml is merely a
recoding of the PHYLIP 3.3 DNAML program from PASCAL to C. 

For Felsenstein's phylogenetic analysis softwares, including the latest
versions of DNAML, visit the PHYLIP Home Page:
	http://evolution.genetics.washington.edu/phylip.html

When publishing work that based on results from fastDNAml please cite:

   Felsenstein, J.  1981.  Evolutionary trees from DNA sequences:
   A maximum likelihood approach.  J. Mol. Evol. 17: 368-376.

   Olsen, G. J., Matsuda, H., Hagstrom, R., and Overbeek, R.  1994.
   fastDNAml:  A tool for construction of phylogenetic trees of DNA
   sequences using maximum likelihood.  Comput. Appl. Biosci. 10: 41-48.

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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Required To Build: devel/gmake

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To install the port: cd /usr/ports/biology/fastdnaml/ && make install clean
To add the package: pkg_add -r fastdnaml

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Configuration Options

     No options to configure

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Master Sites:

http://geta.life.uiuc.edu:80/~gary/programs/fastDNAml/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Add SHA256

Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)

Add SIZE.

Pet portlint.

Date: Tue, 04 Nov 2003 00:42:55 +0900
From: Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
Subject: Re: question about FreeBSD ports you maintain

Briefly, I have no time for maintaining ports.
So I wish to leave the maintainer position of these ports:

biology/fastdnaml
textproc/wv

Thanks you for maintaining the FreeBSD system.

                                        Best regards,
                                        Motomichi Matsuzaki

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

De-pkg-comment.

Add NOPORTDOCS support to pkg-plist    

gmake is needed    

Initial import of fastDNAml Version 1.2.2    

10 vulnerabilities affecting 29 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities