afni 2008.01.02.1043_6 science =1

Advanced Functional Neuro Imaging
Maintained by: jwbacon@tds.net
Port Added: 25 Jan 2006 17:37:44
Also Listed In: biology graphics
License: not specified in port

This is a port of AFNI, Analysis of Functional Neuro Imaging.  AFNI is
a tool for analyzing 3 dimensional images, especially functional MRI
images used in brain mapping research.

WWW: http://www.neuro.mcw.edu/Ports

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: devel/gmake, x11/libXi, x11/libXpm
Required To Run: graphics/jpeg, multimedia/mpeg_encode, graphics/whirlgif, graphics/netpbm, sysutils/endian, x11/libXi, x11/libXpm
Required Libraries: converters/libiconv, devel/gettext, x11-toolkits/open-motif, graphics/libGLw, graphics/libGLU
There are no ports dependent upon this port

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To install the port: cd /usr/ports/science/afni/ && make install clean
To add the package: pkg_add -r afni

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Configuration Options

     No options to configure

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Master Sites:

http://www.neuro.mcw.edu/Ports/distfiles/AFNI/2008.01.02.1043/

http://afni.nimh.nih.gov/pub/dist/tgz/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/AFNI-2008.01.02.1043/

The vast majority of pkg-descr files had the following format when they
had both lines:

Author: ...
WWW: ....

So standardize on that, and move them to the end of the file when necessary.

Also fix some more whitespace, and remove more "signature tags" of varying
forms, like -- name, etc.

s/AUTHOR/Author/

A few other various formatting issues

 - remove MD5

Bump PORTREVISION after open-mofit update

Bounce PORTREVISION for gettext-related ports.  Have fun, ya'll.

- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi

- update to jpeg-8

Update maintainer's email address.  Had already been done for his
other ports.

Fix science/afni after X.org 7.4 import (needs Xi).

Reported by:    pointyhat (via pav)

- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV

Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)

- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)

- Update to 2008.01.02.1043

PR:             ports/119961
Submitted by:   Jason Bacon <bacon smithers.neuro.mcw.edu> (maintainer)

- Update to 2007.06.15.1339
- Unbreak

PR:             113887
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)

BROKEN: Does not compile

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

- Update to 2007.04.18.1830
- Respect X11BASE

PR:             111890
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)

Respect X11BASE

PR:     ports/106101
Submitted by:   self
Approved by:    Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
Reported by:    pointyhat

- Fix plugins
- Update to 2006.06.30.1332

PR:             ports/103318
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)

Remove backquote from BROKEN string to avoid upsetting portsmon code.

Hat:            portmgr

Update to 2006.03.21.1314

PR:             97404
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu>

Update to 2005.12.30.0934.2

PR:             94302
Submitted by:   maintainer

Change `NOT_FOR_ARCHS' with `if ARCH then BROKEN'

Noticed by:     danfe
Approved by:    garga (mentor)

Mark NOT_FOR_ARCHS=sparc64, maintainer did not fix the build for 7 days
after kris' mail

Approved by:    garga (mentor)

Changes to the port:
Author fixed the problem with filename versioning by placing filenames
without version in their name in a subdirectory on the web server.

Changes to the software itself:
-DPIC -fPIC used only for amd64 and ia64, suggested by kris

Approved by:    garga (mentor)

Update Makefile.FreeBSD_PORT's checksum.

-DPIC -fPIC were added to CFLAGS in Makefile.FreeBSD_PORT to make it
compile on amd64.

Approved by:    garga (mentor)

Add new port science/afni

AFNI (Advanced Functional Neuro Imaging) is a tool for analyzing
3 dimensional images, especially functional MRI images used in
brain mapping research.

WWW: http://afni.nimh.nih.gov/

PR:             ports/90752
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu>
Reviewed by:    garga (mentor)
Approved by:    garga (mentor)

15 vulnerabilities affecting 34 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities