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Port details
afni Advanced Functional Neuro Imaging
2012.04.17.2129_12 science on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwbacon@tds.net search for ports maintained by this maintainer
Port Added: 25 Jan 2006 17:37:44
Also Listed In: biology graphics
License: GPLv2
This is a port of AFNI, Analysis of Functional Neuro Imaging.  AFNI is
a tool for analyzing 3 dimensional images, especially functional MRI
images used in brain mapping research.

WWW: http://afni.nimh.nih.gov/afni/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. msgfmt : devel/gettext-tools
  2. gmake : devel/gmake
  3. gcc48 : lang/gcc
  4. as : devel/binutils
  5. glproto.pc : x11/glproto
  6. dri2proto.pc : x11/dri2proto
  7. xi.pc : x11/libXi
  8. xpm.pc : x11/libXpm
  9. perl5.18.4 : lang/perl5.18
Runtime dependencies:
  1. cjpeg : graphics/jpeg
  2. mpeg_encode : multimedia/mpeg_encode
  3. whirlgif : graphics/whirlgif
  4. ppmtogif : graphics/netpbm
  5. endian : sysutils/endian
  6. qhull : math/qhull5
  7. gcc48 : lang/gcc
  8. xi.pc : x11/libXi
  9. xpm.pc : x11/libXpm
  10. perl5.18.4 : lang/perl5.18
Library dependencies:
  1. libXm.so : x11-toolkits/open-motif
  2. libR.so : math/R
  3. libgsl.so : math/gsl
  4. libnetcdff.so : science/netcdf-fortran
  5. libintl.so : devel/gettext-runtime
  6. libiconv.so.3 : converters/libiconv
  7. libXm.so.4 : x11-toolkits/open-motif
  8. libGLw.so : graphics/libGLw
  9. libGLU.so : graphics/libGLU
There are no ports dependent upon this port

To install the port: cd /usr/ports/science/afni/ && make install clean
To add the package: pkg install science/afni


Configuration Options
===> The following configuration options are available for afni-2012.04.17.2129_12:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

USES:
gettext iconv gmake motif perl5 shebangfix

Master Sites:
  1. http://distcache.FreeBSD.org/ports-distfiles/AFNI-2012.04.17.2129/
  2. http://personalpages.tds.net/~jwbacon/Ports/distfiles/AFNI/2012.04.17.2129/
  3. http://www.acadix.biz/Ports/distfiles/AFNI/2012.04.17.2129/

Number of commits found: 48

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
24 Jan 2015 19:27:28
Original commit files touched by this commit  2012.04.17.2129_12
Revision:377815
antoine search for other commits by this committer
Fix some _DEPENDS
12 Nov 2014 18:48:53
Original commit files touched by this commit  2012.04.17.2129_12
Revision:372500
antoine search for other commits by this committer
Cleanup plist
10 Sep 2014 20:50:37
Original commit files touched by this commit  2012.04.17.2129_11
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
17 Aug 2014 13:09:56
Original commit files touched by this commit  2012.04.17.2129_10
Revision:365182
tijl search for other commits by this committer
math/gsl:
- Add USES=libtool and bump dependent ports
- Add USES=pathfix and INSTALL_TARGET=install-strip

Approved by:	portmgr (implicit, bump unstage port)
15 Aug 2014 21:08:21
Original commit files touched by this commit  2012.04.17.2129_9
Revision:365049
sunpoet search for other commits by this committer
- Update to 4.4.0
- Bump PORTREVISION for science/netcdf-fortran shlib change [1]

Changes:	https://github.com/Unidata/netcdf-fortran/blob/master/RELEASE_NOTES.md
Approved by:	portmgr (implicit, unstaged port) [1]
15 Jul 2014 16:51:35
Original commit files touched by this commit  2012.04.17.2129_8
Revision:361975
adamw search for other commits by this committer
Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.
25 Jun 2014 05:35:32
Original commit files touched by this commit  2012.04.17.2129_8
Revision:359185
bapt search for other commits by this committer
Convert GMAKE to MAKE_CMD
Please note that lots of invocation of MAKE_CMD here are wrong as they do not
properly respect MAKE_ENV and friends

With hat:	portmgr
17 Jun 2014 14:41:05
Original commit files touched by this commit  2012.04.17.2129_8
Revision:358125
rene search for other commits by this committer
science/afni: bring back into shape.

- Stage support
- Unexpire
- Add license (GPLv2)
- Use modern LIB_DEPENDS
- Explicitly mention dependencies
- Add CONFLICTS with im-*, nifticlib-* and open-usp-tukubai-*
- Use perl5 and GCC
- Tidy pkg-descr
- Clean up pkg-plist
- Bump PORTREVISION

While here:
- Use BROKEN_arch to avoid including bsd.port.pre.mk
- Use PORT_OPTIONS:MDOCS instead of NOPORTDOCS
- Remove obsolete post-install target

PR:		186988
Submitted by:	maintainer (jwbacon@tds.net)
13 May 2014 16:59:52
Original commit files touched by this commit  2012.04.17.2129_7
Revision:353973
antoine search for other commits by this committer
Deprecate ports BROKEN for more than 6 months

With hat:	portmgr
10 Mar 2014 20:55:22
Original commit files touched by this commit  2012.04.17.2129_7
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
13 Nov 2013 08:19:35
Original commit files touched by this commit  2012.04.17.2129_6
Revision:333659
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
26 Oct 2013 00:52:36
Original commit files touched by this commit  2012.04.17.2129_6
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 22:48:31
Original commit files touched by this commit  2012.04.17.2129_5
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
26 Aug 2013 16:06:38
Original commit files touched by this commit  2012.04.17.2129_5
Revision:325401
bf search for other commits by this committer
Update math/gsl to 1.16 and adjust some dependent ports
10 Jul 2013 07:00:44
Refresh Original commit files touched by this commit
Revision:322622  Sanity Test Failure
bapt search for other commits by this committer
Convert from USE_MOTIF to USES=motif
While here:
- Trim headers
- Convert USE_GMAKE to USES=gmake
- Remove indefinite article from comment
28 May 2013 15:15:06
Original commit files touched by this commit  2012.04.17.2129_4
Revision:319316
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
27 Apr 2013 18:25:25
Original commit files touched by this commit  2012.04.17.2129_3
Revision:316683
mva search for other commits by this committer
- Convert USE_ICONV=yes to USES=iconv
- Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig and
  USE_GETTEXT=yes to USES=gettext while here
07 Mar 2013 04:21:35
Original commit files touched by this commit  2012.04.17.2129_3
Revision:313562
bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
04 Jan 2013 17:51:39
Original commit files touched by this commit  2012.04.17.2129_2
Revision:309935
bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
24 Jun 2012 21:53:38
Original commit files touched by this commit  2012.04.17.2129_1
dougb search for other commits by this committer
s/X11BASE/LOCALBASE/, or equivalent.

The X11BASE variable is long gone, however these ports were not updated.
01 Jun 2012 05:26:28
Original commit files touched by this commit  2012.04.17.2129_1
dinoex search for other commits by this committer
- update png to 1.5.10
11 May 2012 17:05:09
Original commit files touched by this commit  2012.04.17.2129
pawel search for other commits by this committer
- Update to build 2012-04-17 [1]
- Projest has new homepage [1]
- Mark MAKE_JOBS_UNSAFE

PR:             ports/167651 [1]
Submitted by:   Jason Bacon <jwbacon@tds.net> (maintainer) [1]
24 Oct 2011 09:11:38
Original commit files touched by this commit  2008.01.02.1043_6
dougb search for other commits by this committer
The vast majority of pkg-descr files had the following format when they
had both lines:

Author: ...
WWW: ....

So standardize on that, and move them to the end of the file when necessary.

Also fix some more whitespace, and remove more "signature tags" of varying
forms, like -- name, etc.

s/AUTHOR/Author/

A few other various formatting issues
03 Jul 2011 13:22:25
Original commit files touched by this commit  2008.01.02.1043_6
ohauer search for other commits by this committer
 - remove MD5
02 May 2011 12:44:53
Original commit files touched by this commit  2008.01.02.1043_6
makc search for other commits by this committer
Bump PORTREVISION after open-mofit update
31 May 2010 02:01:56
Original commit files touched by this commit  2008.01.02.1043_5
ade search for other commits by this committer
Bounce PORTREVISION for gettext-related ports.  Have fun, ya'll.
28 Mar 2010 06:47:48
Original commit files touched by this commit  2008.01.02.1043_4
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
05 Feb 2010 11:46:55
Original commit files touched by this commit  2008.01.02.1043_3
dinoex search for other commits by this committer
- update to jpeg-8
19 Jun 2009 20:06:31
Original commit files touched by this commit  2008.01.02.1043_2
linimon search for other commits by this committer
Update maintainer's email address.  Had already been done for his
other ports.
24 Jan 2009 10:02:09
Original commit files touched by this commit  2008.01.02.1043_2
flz search for other commits by this committer
Fix science/afni after X.org 7.4 import (needs Xi).

Reported by:    pointyhat (via pav)
25 Jul 2008 12:24:09
Original commit files touched by this commit  2008.01.02.1043_1
pav search for other commits by this committer
- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV
06 Jun 2008 13:59:05
Original commit files touched by this commit  2008.01.02.1043_1
edwin search for other commits by this committer
Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)
19 Apr 2008 17:56:05
Original commit files touched by this commit  2008.01.02.1043
  Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
28 Jan 2008 16:42:02
Original commit files touched by this commit  2008.01.02.1043
tabthorpe search for other commits by this committer
- Update to 2008.01.02.1043

PR:             ports/119961
Submitted by:   Jason Bacon <bacon smithers.neuro.mcw.edu> (maintainer)
21 Jun 2007 12:33:48
Original commit files touched by this commit  2007.06.15.1339
miwi search for other commits by this committer
- Update to 2007.06.15.1339
- Unbreak

PR:             113887
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
10 Jun 2007 04:04:38
Original commit files touched by this commit  2007.04.18.1830_1
kris search for other commits by this committer
BROKEN: Does not compile
19 May 2007 20:32:57
Original commit files touched by this commit  2007.04.18.1830_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
21 Apr 2007 13:37:39
Original commit files touched by this commit  2007.04.18.1830
miwi search for other commits by this committer
- Update to 2007.04.18.1830
- Respect X11BASE

PR:             111890
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
01 Dec 2006 14:07:50
Original commit files touched by this commit  2006.06.30.1332
laszlof search for other commits by this committer
Respect X11BASE

PR:     ports/106101
Submitted by:   self
Approved by:    Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
Reported by:    pointyhat
24 Sep 2006 18:24:09
Original commit files touched by this commit  2006.06.30.1332
pav search for other commits by this committer
- Fix plugins
- Update to 2006.06.30.1332

PR:             ports/103318
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
06 Jul 2006 21:57:06
Original commit files touched by this commit  2006.03.21.1314
linimon search for other commits by this committer
Remove backquote from BROKEN string to avoid upsetting portsmon code.

Hat:            portmgr
25 May 2006 14:23:50
Original commit files touched by this commit  2006.03.21.1314
arved search for other commits by this committer
Update to 2006.03.21.1314

PR:             97404
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu>
15 Apr 2006 18:24:01
Original commit files touched by this commit  2005.12.30.0934.2
arved search for other commits by this committer
Update to 2005.12.30.0934.2

PR:             94302
Submitted by:   maintainer
13 Feb 2006 10:24:18
Original commit files touched by this commit  2005.12.30.0934
vd search for other commits by this committer
Change `NOT_FOR_ARCHS' with `if ARCH then BROKEN'

Noticed by:     danfe
Approved by:    garga (mentor)
09 Feb 2006 15:58:54
Original commit files touched by this commit  2005.12.30.0934
vd search for other commits by this committer
Mark NOT_FOR_ARCHS=sparc64, maintainer did not fix the build for 7 days
after kris' mail

Approved by:    garga (mentor)
30 Jan 2006 10:03:13
Original commit files touched by this commit  2005.12.30.0934
vd search for other commits by this committer
Changes to the port:
Author fixed the problem with filename versioning by placing filenames
without version in their name in a subdirectory on the web server.

Changes to the software itself:
-DPIC -fPIC used only for amd64 and ia64, suggested by kris

Approved by:    garga (mentor)
26 Jan 2006 09:35:45
Original commit files touched by this commit  2005.12.30.0934
vd search for other commits by this committer
Update Makefile.FreeBSD_PORT's checksum.

-DPIC -fPIC were added to CFLAGS in Makefile.FreeBSD_PORT to make it
compile on amd64.

Approved by:    garga (mentor)
25 Jan 2006 17:34:35
Original commit files touched by this commit  2005.12.30.0934
vd search for other commits by this committer
Add new port science/afni

AFNI (Advanced Functional Neuro Imaging) is a tool for analyzing
3 dimensional images, especially functional MRI images used in
brain mapping research.

WWW: http://afni.nimh.nih.gov/

PR:             ports/90752
Submitted by:   Jason Bacon <bacon@smithers.neuro.mcw.edu>
Reviewed by:    garga (mentor)
Approved by:    garga (mentor)

Number of commits found: 48

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