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Port details
p5-Bio-Glite Perl Interface to G-language
0.10_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 02 Apr 2009 18:25:38
Also Listed In: perl5
License: not specified in port
Bio::Glite is an interface to G-language Genome Analysis Environment
through its REST web service (http://www.g-language.org). This module
allows almost everything G-language GAE can do, without installing
all necessary tookits and modules.

Advantage of this module over the standard installation of
G-language GAE package is:
   1. Easy installation from CPAN
   2. Extremely light-weight (less than 1000 lines of code)
   3. Does not require much CPU/RAM (all calculation is done on
the cloud)

Disadvantages includes:
   1. Slower analysis speed
   2. Internet connection is required
   3. No other software interfaces such as the G-language Shell

WWW: http://search.cpan.org/dist/Bio-Glite/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. p5-libwww>=5 : www/p5-libwww
  2. /usr/local/bin/perl5.18.4 : lang/perl5.18
Runtime dependencies:
  1. p5-libwww>=5 : www/p5-libwww
  2. /usr/local/bin/perl5.18.4 : lang/perl5.18
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/p5-Bio-Glite/ && make install clean
To add the package: pkg install biology/p5-Bio-Glite


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/Bio/
  8. http://backpan.perl.org/modules/by-module/Bio/
  9. http://cpan.metacpan.org/modules/by-module/Bio/
  10. http://distcache.FreeBSD.org/ports-distfiles/
  11. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  12. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  13. http://www.cpan.dk/modules/by-module/Bio/
  14. http://www.cpan.dk/modules/by-module/Bio/
  15. http://www.cpan.org/modules/by-module/Bio/

Number of commits found: 12

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
26 Nov 2014 13:08:38
Original commit files touched by this commit  0.10_2
Revision:373448
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Oct 2014 07:10:48
Original commit files touched by this commit  0.10_1
Revision:371237
bapt search for other commits by this committer
Cleanup plist
05 Jan 2014 12:07:21
Original commit files touched by this commit  0.10_1
Revision:338751
az search for other commits by this committer
- support stage
20 Sep 2013 15:55:44
Original commit files touched by this commit  0.10_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
02 Aug 2013 18:52:11
Original commit files touched by this commit  0.10_1
Revision:324174
mat search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
29 Mar 2013 00:44:54
Original commit files touched by this commit  0.10_1
Revision:315509
eadler search for other commits by this committer
For perl@ owned ports:

- Fix COMMENT
- Trim header
30 Oct 2012 02:03:30
Original commit files touched by this commit  0.10_1
Revision:306655
wen search for other commits by this committer
- Reset maintainer to perl@

Feature safe:	yes
30 Oct 2012 01:47:15
Original commit files touched by this commit  0.10_1
Revision:306652
wen search for other commits by this committer
- Trim Makefile headers
- Reset maintainer to perl@

Feature safe:	yes
21 Jan 2012 17:40:15
Original commit files touched by this commit  0.10_1
eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
19 Mar 2011 12:38:54
Original commit files touched by this commit  0.10_1
miwi search for other commits by this committer
- Get Rid MD5 support
29 Jan 2010 14:52:21
Original commit files touched by this commit  0.10_1
kuriyama search for other commits by this committer
- Remove unneeded dependencies which is in perl-5.8.9 dist
  (part 19; last!).

Approved by:    portmgr (itetcu)
02 Apr 2009 18:24:59
Original commit files touched by this commit  0.10
miwi search for other commits by this committer
Bio::Glite is an interface to G-language Genome Analysis Environment
through its REST web service (http://www.g-language.org). This module
allows almost everything G-language GAE can do, without installing
all necessary tookits and modules.

Advantage of this module over the standard installation of
G-language GAE package is:
   1. Easy installation from CPAN
   2. Extremely light-weight (less than 1000 lines of code)
   3. Does not require much CPU/RAM (all calculation is done on
the cloud)

Disadvantages includes:
   1. Slower analysis speed
   2. Internet connection is required
   3. No other software interfaces such as the G-language Shell

WWW: http://search.cpan.org/dist/Bio-Glite/

PR:             ports/133273
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 12

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