A collection of Perl modules for bioinformatics Maintained by:fernan@iib.unsam.edu.ar Port Added: 28 Jul 2000 12:06:03 Also Listed In:perl5
The Bioperl Project is an international association of developers of open
source Perl tools for bioinformatics, genomics and life science research.
Bioperl is a collection of object-oriented Perl modules created by the
Bioperl Project. It forms the basis of a large number of bioinformatics and
genomics applications.
(For an interesting aside on "How Perl saved the Human Genome Project", see
http://bioperl.org/GetStarted/tpj_ls_bio.html)
WWW: http://bioperl.org/
-- Johann Visagie <wjv@FreeBSD.org>
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.
PR: ports/122674
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by: araujo (myself)
Approved by: portmgr (pav)
Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.
Work done by: gabor
Sponsored by: Google Summer of Code 2007
Hat: portmgr
After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, all
these ports were broken because they always depended on it. I've rearranged all
the dependencies to fit the new scheme.
Major update from 0.7.2 to 1.4 by new maintainer. This is almost a complete
rework of the port.
See the page http://news.open-bio.org/archives/cat_bioperl.html for the
changes between 1.2 and 1.4. The older changes are in the CVS tree.
From the new maintainer:
Note that this new port just handles the installation of bioperl and
not of additional extra stuff (bioperl-gui, bioperl-corba-server,
bioperl-corba-client). This is unlike the behaviour of the current
port.
The extra stuff, though still functional, had very little adoption
among users, and does not appear to be currently supported/maintained.
PR: ports/47303 (and subsequent)
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
- Properly list run-time dependencies in RUN_DEPENDS in Makefile. - Deploy
%%PERL_VER%% and %%PERL_ARCH%% pragmas consistently throughout pkg-plist.
(Ouch, that was embarrassing.) - Bump PORTREVISION due to the above. -
Update my email address and the project's URL in pkg-descr.
