c8e5 FreshPorts -- biology/py-biopython
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Port details
py-biopython 1.60 biology on this many watch lists=3 search for ports that depend on this port
Collection of Python modules for bioinformatics
Maintained by: mauricio@arareko.net search for ports maintained by this maintainer
Port Added: 31 Jul 2000 09:12:24
Also Listed In: python
License: not specified in port


The Biopython Project is an international association of developers who are
providing freely available Python tools for use in areas of computational
molecular biology such as bioinformatics and genomics.

Biopython is a collection of Python packages and modules created by the
Biopython Project, intended to provide the basis for building bioinformatics
applications in the Python language.

Note that the current release is alpha quality, and not yet deemed to be
stable.

This port includes optional support for Biopython-CORBA, a CORBA interface
built to the BioCorba standard (http://biocorba.org/).

WWW: http://biopython.org/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Build:
  1. math/py-numpy
  2. devel/py-setuptools
  3. lang/python27
Required To Run:
  1. math/py-numpy
  2. print/py-reportlab
  3. devel/py-setuptools
  4. lang/python27
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/py-biopython/ && make install clean
To add the package: pkg_add -r py27-biopython


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://www.biopython.org/DIST/

Number of commits found: 41

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
25 Sep 2012 08:06:43
Original commit files touched by this commit  1.60
rm search for other commits by this committer
- update to 1.60

while here:
- convert Makefile header into two-line format
- update COMMENT (indefinite article removed)
- change USE_PYTHON to just -2.7
- remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there
- tab -> space change in pkg-descr:WWW

PR:		171115
Submitted by:	wen
Approved by:	Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
06 Mar 2012 06:40:50
Original commit files touched by this commit  1.59
wen search for other commits by this committer
- Update to 1.59

PR:             ports/165582
Submitted by:   wen@ (myself)
Approved by:    Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via
email)
22 Oct 2011 23:50:23
Original commit files touched by this commit  1.57
eadler search for other commits by this committer
- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)
24 May 2011 09:06:29
Original commit files touched by this commit  1.57
wen search for other commits by this committer
- Update to 1.57

PR:             ports/156329
Submitted by:   Wen Heping (myself)
Approved by:    maintainer
24 Feb 2011 23:25:54
Original commit files touched by this commit  1.54_1
miwi search for other commits by this committer
- Move over to python2.5 or higher
- While here kick md5
02 Jul 2010 02:57:19
Original commit files touched by this commit  1.54
wen search for other commits by this committer
- Update to 1.54

PR:             ports/148274
Submitted by:   Ju Pengfei <jupengfei@gmail.com>
Approved by:    maintainer
Feature safe:   yes
06 Jan 2010 00:29:25
Original commit files touched by this commit  1.53
wen search for other commits by this committer
- Update to 1.53

PR:             ports/142221
Submitted by:   Wen Heping (myself)
Approved by:    maintainer
04 Sep 2009 20:41:25
Original commit files touched by this commit  1.51
miwi search for other commits by this committer
- Update to 138038

PR:             138038
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
11 Oct 2008 15:26:33
Original commit files touched by this commit  1.48
miwi search for other commits by this committer
- Update to 1.48

PR:             127776
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    maintainer
11 Aug 2008 22:06:31
Original commit files touched by this commit  1.47
miwi search for other commits by this committer
- Update to 1.47

PR:             125912
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    maintainer timeout
04 Jul 2008 02:53:15
Original commit files touched by this commit  1.45
beech search for other commits by this committer
- Update to 1.45

PR:             ports/125134
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer)
31 May 2007 03:49:14
Original commit files touched by this commit  1.43
miwi search for other commits by this committer
- Fix typos.

Reported by:    stas@
30 May 2007 06:57:20
Original commit files touched by this commit  1.43
miwi search for other commits by this committer
- Update to 1.43

PR:             111817
Submitted by:   "P.BandieraPaiva" <paiva@unifesp.br>
Approved by:    maintainer
31 Oct 2006 13:25:21
Original commit files touched by this commit  1.42
miwi search for other commits by this committer
- Update to 1.42

PR:             ports/104635
Submitted by:   Thomas Abthorpe <thomas@goodking.ca>
Approved by:    maintainer
11 Nov 2005 01:15:35
Original commit files touched by this commit  1.41
mnag search for other commits by this committer
Update to 1.41
Take MAINTAINER
Add SHA256

PR:             88792
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
02 Dec 2004 05:51:25
Original commit files touched by this commit  1.30
perky search for other commits by this committer
Fix build on Python 2.4

Spotted by:     kris
20 Nov 2004 08:09:49
Original commit files touched by this commit  1.30
linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
06 Nov 2004 23:12:14
Original commit files touched by this commit  1.30
pav search for other commits by this committer
- Fix build on amd64 (crude hack to pass -fPIC to c++ compiles)

Reported by:    pointyhat via kris
Tested on:      arved's box
27 Oct 2004 20:39:17
Original commit files touched by this commit  1.30
pav search for other commits by this committer
- Update to 1.30

PR:             ports/71400
Submitted by:   Stefan Walter <sw@gegenunendlich.de>
Approved by:    maintainer timeout (2 months)
02 Jul 2004 08:20:02
Original commit files touched by this commit  1.23
kris search for other commits by this committer
BROKEN: Does not build
31 Mar 2004 03:12:58
Original commit files touched by this commit  1.23
trevor search for other commits by this committer
SIZEify (maintainer timeout)
09 Feb 2004 21:40:48
Original commit files touched by this commit  1.23
des search for other commits by this committer
Upgrade to 1.23.

Approved by:    maintainer timeout
20 Nov 2003 15:06:15
Original commit files touched by this commit  1.00.a4
trevor search for other commits by this committer
Define USE_PERL5_BUILD, not erroneous USE_PERL.

Submitted by:   Oliver Eikemeier
20 Nov 2003 13:51:47
Original commit files touched by this commit  1.00.a4
trevor search for other commits by this committer
Define USE_PERL to make Perl available for (mostly deprecated)
"perl -pi -e" construction.
13 Nov 2003 14:45:08
Original commit files touched by this commit  1.00.a4
trevor search for other commits by this committer
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
22 Oct 2003 09:29:55
Original commit files touched by this commit  1.00.a4
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
01 Aug 2003 22:04:57
Original commit files touched by this commit  1.00.a4
perky search for other commits by this committer
Fix python version detection routines to cope with python 2.3's
boolean representation.
07 Mar 2003 05:56:43
Original commit files touched by this commit  1.00.a4
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
15 Jul 2002 11:37:35
Original commit files touched by this commit  1.00.a4
tg search for other commits by this committer
Use $PYNUMERIC in the dependencies.
22 Jan 2002 10:54:02
files touched by this commit
wjv search for other commits by this committer
- Update to version 1.00a4    
02 Oct 2001 09:31:32
files touched by this commit
wjv search for other commits by this committer
- Update the included (optional) Biopython-CORBA pacakge to version 0.3.0   - If
CORBA support is included, the default ORB has changed from omniORB to     ORBit
  - PORTREVISION bump    
06 Sep 2001 13:42:36
files touched by this commit
wjv search for other commits by this committer
- Update to version 1.00.a3   - Use pkg-req to check the installed version of
Python    
09 Jul 2001 10:57:55
files touched by this commit
wjv search for other commits by this committer
Update to version 1.00.a2    
29 Jun 2001 16:04:07
files touched by this commit
wjv search for other commits by this committer
Use $FILESDIR rather than hard-coded path.    
15 Jun 2001 14:25:56
files touched by this commit
wjv search for other commits by this committer
Update to 1.00.a1; change MAINTAINER to my new address.   Many changes to port,
including addition of CORBA functionality.    
29 May 2001 13:50:08
files touched by this commit
sobomax search for other commits by this committer
math/numpy was renamed to math/py-numeric.    
08 Oct 2000 00:23:30
files touched by this commit
asami search for other commits by this committer
Convert category biology to new layout.  
11 Sep 2000 15:56:37
files touched by this commit
nbm search for other commits by this committer
Update to 0.90.d03    
08 Sep 2000 13:24:00
files touched by this commit
tg search for other commits by this committer
Don't break package building on Satoshi's cluster. Explicitly depend   on
python1.5:lang/python15.    
05 Aug 2000 17:01:27
files touched by this commit
will search for other commits by this committer
Upgrade to 0.90.d02.    
31 Jul 2000 13:12:24
files touched by this commit
nbm search for other commits by this committer
Add py-biopython, is a collection of Python packages and modules created   by
the Biopython Project, intended to provide the basis for building  
bioinformatics applications in the Python language.    

Number of commits found: 41

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