ruby-bio 1.4.1 biology =1

Integrated environment for Bioinformatics written in Ruby
Maintained by: mauricio@arareko.net
Port Added: 24 Oct 2001 03:21:52
Also Listed In: ruby
License: not specified in port

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BioRuby project aims to implement integrated environment for
Bioinformatics by using Ruby.

WWW:	http://bioruby.org/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: lang/ruby18
Required To Run: lang/ruby18
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/ruby-bio/ && make install clean
To add the package: pkg_add -r ruby18-bio

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Configuration Options

===> The following configuration options are available for ruby18-bio-1.4.1:
     XMLPARSER=off (default) "xmlparser support for faster Blast processing"
     BDB4=off (default) "bdb4 support for faster flat file indexing"
     MYSQL=off (default) "MySQL database support for BioSQL"
     PGSQL=off (default) "PostgreSQL database support for BioSQL"
===> Use 'make config' to modify these settings

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Master Sites:

http://bioruby.org/archive/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/ruby/

- Fix pkg-plist, got the wrong version before

Reported by:    pointyhat via pav

- Update to 1.4.1
- Remove MD5

PR:             ports/153394
Submitted by:   myself (pgollucci)
Approved by:    mauricio@arareko.net (maintainer)
Sponsored by:   RideCharge Inc. / TaxiMagic

- Update to 1.4.0
- Sort pkg-plist
- seperate NOPORTDOCS and NOPORTEXAMPLES

- Update to 1.1.0

PR:             ports/117369
Submitted by:   Motomichi Matsuzaki <mzaki_AT_e-mail dot ne dot jp>
Approved by:    maintainer (Mauricio Herrera Cuadra)

- Update to 1.0.0
- Provide OPTIONS
- Take maintainership

PR:             ports/94123
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>

- Add SHA256

With portmgr hat on, reset maintainership of knu's ports since he has
been inactive more than 6 months.  We hope to see him back sometime.

Update to 0.6.2.

Fix distsite

PR:             ports/67473
Submitted by:   Roman Neuhauser
Approved by:    maintainer timeout

- Update WWW

Add SIZE data.

Submitted by:   trevor

Update to 0.5.3.

Update to 0.5.2.

Update to 0.5.1.

Update to 0.5.0.

De-pkg-comment.

Update to 0.4.0.

Use RUBY_MOD*.

Update to 0.3.9.

Update to 0.3.8.

Update to 0.3.6.

Update to 0.3.5.

Update to 0.3.3.    

Update to 0.3.2.    

Add ruby-bio (BioRuby), an integrated environment for Bioinformatics   written
in Ruby.    

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

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