ruby-bio 1.1.0 biology =1

Integrated environment for Bioinformatics written in Ruby
Maintained by: mauricio@arareko.net
Port Added: 24 Oct 2001 04:21:52
Also Listed In: ruby

---

---

BioRuby project aims to implement integrated environment for
Bioinformatics by using Ruby.

WWW:	http://bioruby.org/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

---

Required To Build: lang/ruby18
Required To Run: lang/ruby18

---

To install the port: cd /usr/ports/biology/ruby-bio/ && make install clean
To add the package: pkg_add -r ruby18-bio

---

Configuration Options

===> The following configuration options are available for ruby18-bio-1.1.0:
     XMLPARSER=off (default) "xmlparser support for faster Blast processing"
     BDB4=off (default) "bdb4 support for faster flat file indexing"
     MYSQL=off (default) "MySQL database support for BioSQL"
     PGSQL=off (default) "PostgreSQL database support for BioSQL"
===> Use 'make config' to modify these settings

---

Master Sites:

http://bioruby.org/archive/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/ruby/

- Update to 1.1.0

PR:             ports/117369
Submitted by:   Motomichi Matsuzaki <mzaki_AT_e-mail dot ne dot jp>
Approved by:    maintainer (Mauricio Herrera Cuadra)

- Update to 1.0.0
- Provide OPTIONS
- Take maintainership

PR:             ports/94123
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>

- Add SHA256

With portmgr hat on, reset maintainership of knu's ports since he has
been inactive more than 6 months.  We hope to see him back sometime.

Update to 0.6.2.

Fix distsite

PR:             ports/67473
Submitted by:   Roman Neuhauser
Approved by:    maintainer timeout

- Update WWW

Add SIZE data.

Submitted by:   trevor

Update to 0.5.3.

Update to 0.5.2.

Update to 0.5.1.

Update to 0.5.0.

De-pkg-comment.

Update to 0.4.0.

Use RUBY_MOD*.

Update to 0.3.9.

Update to 0.3.8.

Update to 0.3.6.

Update to 0.3.5.

Update to 0.3.3.    

Update to 0.3.2.    

Add ruby-bio (BioRuby), an integrated environment for Bioinformatics   written
in Ruby.    

2 vulnerabilities affecting 3 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities