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Port details
tRNAscan-SE Improved tool for transfer RNA detection
1.23_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Broken BROKEN: No public distfiles
Ignore IGNORE: is marked as broken: No public distfiles

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 27 Mar 2002 14:19:04
License: not specified in port
tRNAscan-SE was written in the PERL (version 5.0) script language.
Input consists of DNA or RNA sequences in FASTA format.  tRNA
predictions are output in standard tabular or ACeDB format.
tRNAscan-SE does no tRNA detection itself, but instead combines the
strengths of three independent tRNA prediction programs by negotiating
the flow of information between them, performing a limited amount of
post-processing, and outputting the results in one of several
formats.

WWW: http://selab.janelia.org/software.html
SVNWeb : Homepage : PortsMon : pkg-plist

To install the port: cd /usr/ports/biology/tRNAscan-SE/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: tRNAscan-SE

distinfo:

SHA256 (tRNAscan-SE-1.23.tar.Z) = 843caf3e258a6293300513ddca7eb7dbbd2225e5baae1e5a7bcafd509f6dd550
SIZE (tRNAscan-SE-1.23.tar.Z) = 846349


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. perl5>=5.24<5.25 : lang/perl5.24
Runtime dependencies:
  1. perl5>=5.24<5.25 : lang/perl5.24
There are no ports dependent upon this port

Configuration Options
===> The following configuration options are available for tRNAscan-SE-1.23_1:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

USES:
perl5 tar:Z

Master Sites:
  1. ftp://selab.janelia.org/pub/software/tRNAscan-SE/

Number of commits found: 18

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
13 Oct 2017 11:14:53
Original commit files touched by this commit  1.23_1
Revision:451982  Sanity Test Failure
bapt search for other commits by this committer
Mark as broken ports with no public distfiles
13 May 2016 18:38:34
Original commit files touched by this commit  1.23_1
Revision:415128
bapt search for other commits by this committer
Prevent collision with getline(3)
29 Jul 2014 19:11:53
Original commit files touched by this commit  1.23_1
Revision:363374
adamw search for other commits by this committer
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)
05 May 2014 10:26:16
Original commit files touched by this commit  1.23_1
Revision:352989
bapt search for other commits by this committer
Support stage
05 Feb 2014 23:44:50
Original commit files touched by this commit  1.23_1
Revision:342905
marino search for other commits by this committer
biology/tRNAscan-SE: Fix hardcoded perl path
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.23_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
03 Aug 2013 08:45:52
Original commit files touched by this commit  1.23_1
Revision:324181
az search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
19 Jun 2013 19:20:26
Original commit files touched by this commit  1.23_1
Revision:321314
bsam search for other commits by this committer
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. pet portlint: use {} instaed of () at variable;
. use PLIST_FILES, PORTDATA and PORTDOCS at Makefile;
. get rid of pkg-plist;
. remove article from COMMENT;
. trim Makefile headers.
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.23_1
miwi search for other commits by this committer
- Get Rid MD5 support
22 May 2008 00:49:42
Original commit files touched by this commit  1.23_1
miwi search for other commits by this committer
- Update MASTER_SITES and WWW: line
- Support CC/CFLAGS properly
- Strip binary

PR:             123866
Submitted by:   Ports Fury
15 May 2008 02:50:22
Original commit files touched by this commit  1.23
erwin search for other commits by this committer
Update to 1.23
10 Mar 2007 20:20:10
Original commit files touched by this commit  1.21
linimon search for other commits by this committer
Reset chuynh@biolateral.com.au: address bounces.

Hat:            portmgr
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.21
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
31 Mar 2004 03:12:58
Original commit files touched by this commit  1.21
trevor search for other commits by this committer
SIZEify (maintainer timeout)
22 Oct 2003 09:29:55
Original commit files touched by this commit  1.21
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
21 Feb 2003 11:01:38
Original commit files touched by this commit  1.21
knu search for other commits by this committer
De-pkg-comment.
04 Nov 2002 01:47:57
Original commit files touched by this commit  1.21
edwin search for other commits by this committer
Port needs perl to build.
Seen on: bento
27 Mar 2002 14:18:50
Original commit files touched by this commit  1.21
wjv search for other commits by this committer
Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.

PR:             33853
Submitted by:   chuynh@biolateral.com.au

Number of commits found: 18

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