tRNAscan-SE 1.23_1 biology =0

An improved tool for transfer RNA detection

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
Port Added: 27 Mar 2002 14:19:04
License: not specified in port

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tRNAscan-SE was written in the PERL (version 5.0) script language.
Input consists of DNA or RNA sequences in FASTA format.  tRNA
predictions are output in standard tabular or ACeDB format.
tRNAscan-SE does no tRNA detection itself, but instead combines the
strengths of three independent tRNA prediction programs by negotiating
the flow of information between them, performing a limited amount of
post-processing, and outputting the results in one of several
formats.

WWW: http://selab.janelia.org/software.html

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: lang/perl5.8
Required To Run: lang/perl5.8
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/tRNAscan-SE/ && make install clean
To add the package: pkg_add -r tRNAscan-SE

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Configuration Options

     No options to configure

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Master Sites:

ftp://selab.janelia.org/pub/software/tRNAscan-SE/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Get Rid MD5 support

- Update MASTER_SITES and WWW: line
- Support CC/CFLAGS properly
- Strip binary

PR:             123866
Submitted by:   Ports Fury

Update to 1.23

Reset chuynh@biolateral.com.au: address bounces.

Hat:            portmgr

SHA256ify

Approved by:    krion@

SIZEify (maintainer timeout)

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

De-pkg-comment.

Port needs perl to build.
Seen on: bento

Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.

PR:             33853
Submitted by:   chuynh@biolateral.com.au

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

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