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Port details
tRNAscan-SE Improved tool for transfer RNA detection
1.23_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 27 Mar 2002 14:19:04
License: not specified in port
tRNAscan-SE was written in the PERL (version 5.0) script language.
Input consists of DNA or RNA sequences in FASTA format.  tRNA
predictions are output in standard tabular or ACeDB format.
tRNAscan-SE does no tRNA detection itself, but instead combines the
strengths of three independent tRNA prediction programs by negotiating
the flow of information between them, performing a limited amount of
post-processing, and outputting the results in one of several
formats.

WWW: http://selab.janelia.org/software.html
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. perl5.18.4 : lang/perl5.18
Runtime dependencies:
  1. perl5.18.4 : lang/perl5.18
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/tRNAscan-SE/ && make install clean
To add the package: pkg install biology/tRNAscan-SE


Configuration Options
===> The following configuration options are available for tRNAscan-SE-1.23_1:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

USES:
perl5 tar:Z

Master Sites:
  1. ftp://selab.janelia.org/pub/software/tRNAscan-SE/
  2. http://distcache.FreeBSD.org/ports-distfiles/

Number of commits found: 16

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
29 Jul 2014 19:11:53
Original commit files touched by this commit  1.23_1
Revision:363374
adamw search for other commits by this committer
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)
05 May 2014 10:26:16
Original commit files touched by this commit  1.23_1
Revision:352989
bapt search for other commits by this committer
Support stage
05 Feb 2014 23:44:50
Original commit files touched by this commit  1.23_1
Revision:342905
marino search for other commits by this committer
biology/tRNAscan-SE: Fix hardcoded perl path
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.23_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
03 Aug 2013 08:45:52
Original commit files touched by this commit  1.23_1
Revision:324181
az search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
19 Jun 2013 19:20:26
Original commit files touched by this commit  1.23_1
Revision:321314
bsam search for other commits by this committer
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. pet portlint: use {} instaed of () at variable;
. use PLIST_FILES, PORTDATA and PORTDOCS at Makefile;
. get rid of pkg-plist;
. remove article from COMMENT;
. trim Makefile headers.
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.23_1
miwi search for other commits by this committer
- Get Rid MD5 support
22 May 2008 00:49:42
Original commit files touched by this commit  1.23_1
miwi search for other commits by this committer
- Update MASTER_SITES and WWW: line
- Support CC/CFLAGS properly
- Strip binary

PR:             123866
Submitted by:   Ports Fury
15 May 2008 02:50:22
Original commit files touched by this commit  1.23
erwin search for other commits by this committer
Update to 1.23
10 Mar 2007 20:20:10
Original commit files touched by this commit  1.21
linimon search for other commits by this committer
Reset chuynh@biolateral.com.au: address bounces.

Hat:            portmgr
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.21
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
31 Mar 2004 03:12:58
Original commit files touched by this commit  1.21
trevor search for other commits by this committer
SIZEify (maintainer timeout)
22 Oct 2003 09:29:55
Original commit files touched by this commit  1.21
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
21 Feb 2003 11:01:38
Original commit files touched by this commit  1.21
knu search for other commits by this committer
De-pkg-comment.
04 Nov 2002 01:47:57
Original commit files touched by this commit  1.21
edwin search for other commits by this committer
Port needs perl to build.
Seen on: bento
27 Mar 2002 14:18:50
Original commit files touched by this commit  1.21
wjv search for other commits by this committer
Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.

PR:             33853
Submitted by:   chuynh@biolateral.com.au

Number of commits found: 16

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