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Port details
jags Just Another Gibbs Sampler
4.3.1_3 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.3.1_2Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2004-05-27 15:21:02
Last Update: 2024-02-24 19:25:23
Commit Hash: c5fef46
License: GPLv2
WWW:
http://mcmc-jags.sourceforge.net/
Description:
JAGS is Just Another Gibbs Sampler -- a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. The functionality of JAGS is based on the BUGS program created by the MRC Biostatistics Unit (http://www.mrc-bsu.cam.ac.uk/). There is a short manual that describes the differences between JAGS and BUGS. Some of the BUGS examples have been modified to run with JAGS, and have been turned into a test suite.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (118 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/mcmc-jags-4.3.1_3/catalog.mk
  3. /usr/local/share/licenses/mcmc-jags-4.3.1_3/LICENSE
  4. /usr/local/share/licenses/mcmc-jags-4.3.1_3/GPLv2
  5. bin/mcmc-jags
  6. include/JAGS/Console.h
  7. include/JAGS/JRmath.h
  8. include/JAGS/compiler/Compiler.h
  9. include/JAGS/compiler/Counter.h
  10. include/JAGS/compiler/CounterTab.h
  11. include/JAGS/compiler/LogicalFactory.h
  12. include/JAGS/compiler/MixtureFactory.h
  13. include/JAGS/compiler/NodeFactory.h
  14. include/JAGS/compiler/ObsFuncTab.h
  15. include/JAGS/compiler/ParseTree.h
  16. include/JAGS/distribution/ArrayDist.h
  17. include/JAGS/distribution/DistError.h
  18. include/JAGS/distribution/DistPtr.h
  19. include/JAGS/distribution/DistTab.h
  20. include/JAGS/distribution/Distribution.h
  21. include/JAGS/distribution/RScalarDist.h
  22. include/JAGS/distribution/ScalarDist.h
  23. include/JAGS/distribution/VectorDist.h
  24. include/JAGS/function/ArrayFunction.h
  25. include/JAGS/function/ArrayLogDensity.h
  26. include/JAGS/function/DFunction.h
  27. include/JAGS/function/DPQFunction.h
  28. include/JAGS/function/FuncError.h
  29. include/JAGS/function/FuncTab.h
  30. include/JAGS/function/Function.h
  31. include/JAGS/function/FunctionPtr.h
  32. include/JAGS/function/LinkFunction.h
  33. include/JAGS/function/PFunction.h
  34. include/JAGS/function/QFunction.h
  35. include/JAGS/function/ScalarFunction.h
  36. include/JAGS/function/ScalarLogDensity.h
  37. include/JAGS/function/ScalarVectorFunction.h
  38. include/JAGS/function/VectorFunction.h
  39. include/JAGS/function/VectorLogDensity.h
  40. include/JAGS/graph/AggNode.h
  41. include/JAGS/graph/ArrayLogicalNode.h
  42. include/JAGS/graph/ArrayStochasticNode.h
  43. include/JAGS/graph/ConstantNode.h
  44. include/JAGS/graph/DeterministicNode.h
  45. include/JAGS/graph/Graph.h
  46. include/JAGS/graph/GraphMarks.h
  47. include/JAGS/graph/LinkNode.h
  48. include/JAGS/graph/LogicalNode.h
  49. include/JAGS/graph/MixTab.h
  50. include/JAGS/graph/MixtureNode.h
  51. include/JAGS/graph/Node.h
  52. include/JAGS/graph/NodeError.h
  53. include/JAGS/graph/ParentError.h
  54. include/JAGS/graph/ScalarLogicalNode.h
  55. include/JAGS/graph/ScalarStochasticNode.h
  56. include/JAGS/graph/StochasticNode.h
  57. include/JAGS/graph/VSLogicalNode.h
  58. include/JAGS/graph/VectorLogicalNode.h
  59. include/JAGS/graph/VectorStochasticNode.h
  60. include/JAGS/model/BUGSModel.h
  61. include/JAGS/model/Model.h
  62. include/JAGS/model/Monitor.h
  63. include/JAGS/model/MonitorControl.h
  64. include/JAGS/model/MonitorFactory.h
  65. include/JAGS/model/MonitorInfo.h
  66. include/JAGS/model/NodeArray.h
  67. include/JAGS/model/NodeArraySubset.h
  68. include/JAGS/model/SymTab.h
  69. include/JAGS/module/Module.h
  70. include/JAGS/module/ModuleError.h
  71. include/JAGS/rng/RNG.h
  72. include/JAGS/rng/RNGFactory.h
  73. include/JAGS/rng/RmathRNG.h
  74. include/JAGS/rng/TruncatedNormal.h
  75. include/JAGS/sampler/GraphView.h
  76. include/JAGS/sampler/ImmutableSampleMethod.h
  77. include/JAGS/sampler/ImmutableSampler.h
  78. include/JAGS/sampler/Linear.h
  79. include/JAGS/sampler/Metropolis.h
  80. include/JAGS/sampler/MutableSampleMethod.h
  81. include/JAGS/sampler/MutableSampler.h
  82. include/JAGS/sampler/RWMetropolis.h
  83. include/JAGS/sampler/SampleMethodNoAdapt.h
  84. include/JAGS/sampler/Sampler.h
  85. include/JAGS/sampler/SamplerFactory.h
  86. include/JAGS/sampler/SingletonFactory.h
  87. include/JAGS/sampler/SingletonGraphView.h
  88. include/JAGS/sampler/Slicer.h
  89. include/JAGS/sampler/StepAdapter.h
  90. include/JAGS/sampler/TemperedMetropolis.h
  91. include/JAGS/sarray/Range.h
  92. include/JAGS/sarray/RangeIterator.h
  93. include/JAGS/sarray/SArray.h
  94. include/JAGS/sarray/SimpleRange.h
  95. include/JAGS/util/dim.h
  96. include/JAGS/util/integer.h
  97. include/JAGS/util/logical.h
  98. include/JAGS/util/nainf.h
  99. include/JAGS/version.h
  100. lib/JAGS/modules-4/basemod.so
  101. lib/JAGS/modules-4/bugs.so
  102. lib/JAGS/modules-4/dic.so
  103. lib/JAGS/modules-4/glm.so
  104. lib/JAGS/modules-4/lecuyer.so
  105. lib/JAGS/modules-4/mix.so
  106. lib/JAGS/modules-4/msm.so
  107. lib/libjags.so
  108. lib/libjags.so.4
  109. lib/libjags.so.4.0.3
  110. lib/libjrmath.so
  111. lib/libjrmath.so.0
  112. lib/libjrmath.so.0.0.0
  113. libdata/pkgconfig/jags.pc
  114. libexec/jags-terminal
  115. share/man/man1/jags.1.gz
  116. @owner
  117. @group
  118. @mode
Collapse this list.
Dependency lines:
  • mcmc-jags>0:math/jags
To install the port:
cd /usr/ports/math/jags/ && make install clean
To add the package, run one of these commands:
  • pkg install math/jags
  • pkg install mcmc-jags
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: mcmc-jags
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1650043347 SHA256 (mcmc-jags/JAGS-4.3.1.tar.gz) = f9258355b5e9eb13bd33c5fa720f0cbebacea7d0a4a42b71b0fb14501ee14229 SIZE (mcmc-jags/JAGS-4.3.1.tar.gz) = 2019687

Expand this list (8 items)

Collapse this list.

SHA256 (mcmc-jags/jags_developer_manual.pdf) = 6e7c707b94ffc931807198cc162e8b254859bb774695ae39ef1c1c175560259b SIZE (mcmc-jags/jags_developer_manual.pdf) = 71319 SHA256 (mcmc-jags/jags_installation_manual.pdf) = d55bbf390d7fb1059ec7b89cb5c01bce91a1aea56e8f25ad905414a8f77a0eea SIZE (mcmc-jags/jags_installation_manual.pdf) = 210134 SHA256 (mcmc-jags/jags_user_manual.pdf) = d73a023dc87654e6ae56eb27cc6dba25097e00ddd2d8f7ca2639f27d55e581a3 SIZE (mcmc-jags/jags_user_manual.pdf) = 429729 SHA256 (mcmc-jags/classic-bugs.tar.gz) = cbecdd184516ed1e0ed26993335c7ce6b50b85875c66a059a4ad51780547e580 SIZE (mcmc-jags/classic-bugs.tar.gz) = 86183

Collapse this list.


Packages (timestamps in pop-ups are UTC):
mcmc-jags
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest4.3.1_34.3.1_34.3.0_74.3.1_34.3.1_3-4.3.0_7-
FreeBSD:13:quarterly4.3.1_24.3.1_2-4.3.1_24.3.1_2-4.3.1_2-
FreeBSD:14:latest4.3.1_34.3.1_3-4.3.1_34.3.1_3---
FreeBSD:14:quarterly4.3.1_24.3.1_2-4.3.1_24.3.1_2-4.3.1_2-
FreeBSD:15:latest4.3.1_34.3.1_3n/a4.3.1_2n/a-4.3.1_24.3.1_2
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bison : devel/bison
  2. gfortran13 : lang/gcc13
  3. gmake>=4.3 : devel/gmake
  4. gcc13 : lang/gcc13
  5. as : devel/binutils
Runtime dependencies:
  1. gfortran13 : lang/gcc13
  2. gcc13 : lang/gcc13
Library dependencies:
  1. libltdl.so : devel/libltdl
  2. libopenblas.so : math/openblas
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for mcmc-jags-4.3.1_3: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ====> Options available for the single BLAS: you have to select exactly one of them ATLAS=off: ATLAS BLAS implementation OPENBLAS=on: OpenBLAS BLAS implementation NETLIB=off: BLAS implementation from Netlib ===> Use 'make config' to modify these settings
Options name:
math_jags
USES:
bison compiler:features fortran gmake libtool localbase pathfix blaslapack:openblas
pkg-message:
For install:
Please note that the name of the jags script has been changed from "jags" to "mcmc-jags" on this platform, to avoid a conflict with net/jags, and usage should be adjusted accordingly.
Master Sites:
  1. There is no master site for this port.

Number of commits found: 73

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
4.3.1_3
24 Feb 2024 19:25:23
commit hash: c5fef461e54af62ee47cacb45085698c84ccea34commit hash: c5fef461e54af62ee47cacb45085698c84ccea34commit hash: c5fef461e54af62ee47cacb45085698c84ccea34commit hash: c5fef461e54af62ee47cacb45085698c84ccea34 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
math/jags: Moved man to share/man

Approved by:    portmgr (blanket)
4.3.1_2
12 Dec 2023 19:03:50
commit hash: ab1713728d621e7b57d276ef27de37a8754e6ee0commit hash: ab1713728d621e7b57d276ef27de37a8754e6ee0commit hash: ab1713728d621e7b57d276ef27de37a8754e6ee0commit hash: ab1713728d621e7b57d276ef27de37a8754e6ee0 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
*/*: bump PORTREVISION after the upgrade of OpenBLAS

PR:		273219
4.3.1_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
4.3.1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
4.3.1
20 Jul 2022 14:22:24
commit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5da files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
(Only the first 15 lines of the commit message are shown above View all of this commit message)
4.3.1
16 Apr 2022 16:16:23
commit hash: 1f19b483283b286c1b7aff9f6bd7360bddb6a299commit hash: 1f19b483283b286c1b7aff9f6bd7360bddb6a299commit hash: 1f19b483283b286c1b7aff9f6bd7360bddb6a299commit hash: 1f19b483283b286c1b7aff9f6bd7360bddb6a299 files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
math/jags: update to 4.3.1

Reported by:	portscout
4.3.0_7
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
4.3.0_7
06 May 2020 16:39:12
Revision:534190Original commit files touched by this commit
yuri search for other commits by this committer
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas
4.3.0_6
30 Jan 2020 14:17:44
Revision:524642Original commit files touched by this commit
swills search for other commits by this committer
Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix
4.3.0_5
13 Aug 2019 22:29:43
Revision:508882Original commit files touched by this commit
mat search for other commits by this committer
onvert to UCL & cleanup pkg-message (categories l-m)
4.3.0_5
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
4.3.0_4
22 Apr 2019 13:16:34
Revision:499638Original commit files touched by this commit
gerald search for other commits by this committer
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
4.3.0_3
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
4.3.0_2
29 Jul 2018 22:18:46
Revision:475857Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
4.3.0_1
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
4.3.0
16 Feb 2018 09:46:31
Revision:461995Original commit files touched by this commit
yuri search for other commits by this committer
math/jags: Update to 4.3.0

Additional port changes:
* Changed to DISTVERSION
* Added LICENSE_FILE
* Added dependency devel/libltdl

Reported by:	portscout
Approved by:	tcberner (mentor, implicit)
4.2.0_3
10 Sep 2017 20:55:39
Revision:449591Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
4.2.0_1
01 Apr 2017 15:23:32
Revision:437439Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
4.2.0
11 Jan 2017 01:41:36
Revision:431151Original commit files touched by this commit
vanilla search for other commits by this committer
1: Update to 4.2.0.
2: strip binary.
3: modenize.
4.0.0_3
07 Dec 2016 13:24:57
Revision:428057Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry
4.0.0_2
20 Nov 2016 09:38:09
Revision:426566Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
4.0.0_1
21 Oct 2016 15:21:13
Revision:424427Original commit files touched by this commit
mat search for other commits by this committer
Use USES=pathfix where applicable.

PR:		213195
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D8093
4.0.0_1
03 Oct 2016 15:57:04
Revision:423204Original commit files touched by this commit
riggs search for other commits by this committer
Allow selection of optimised BLAS implementations via OPTIONs

PR:		213090
Submitted by:	elferdo@gmail.com
4.0.0
27 Jun 2016 21:30:34
Revision:417685Original commit files touched by this commit
rene search for other commits by this committer
Reset ports maintained by bf@ until he has time again to work on them.

PR:		210474
Submitted by:	jbeich
With hat:	portmgr-secretary
4.0.0
19 May 2016 11:09:14
Revision:415503Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-messages

Approved by:	portmgr blanket
4.0.0
01 Apr 2016 14:16:20
Revision:412348Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
4.0.0
03 Jan 2016 18:13:45
Revision:405180Original commit files touched by this commit
pi search for other commits by this committer
math/jags: 3.4.0 -> 4.0.0

- New WWW
- Changes:
 
https://martynplummer.wordpress.com/2015/08/02/whats-new-in-jags-4-0-0-part-14-reproducibility-and-testing/
 
https://martynplummer.wordpress.com/2015/08/09/whats-new-in-jags-4-0-0-part-24-dealing-with-undefined-nodes/
 
https://martynplummer.wordpress.com/2015/08/16/whats-new-in-jags-4-0-0-part-34-r-style-features/#more-353

PR:		204525
Submitted by:	Rainer Hurling <rhurlin@gwdg.de>
Approved by:	bf
3.4.0_4
14 May 2015 10:15:09
Revision:386312Original commit files touched by this commit
mat search for other commits by this committer
MASTER_SITES cleanup.

- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
  of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
  no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.

While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.

Also, replace some EXTRACT_SUFX occurences with USES=tar:*.

Checked by:	make fetch-urlall-list
With hat:	portmgr
Sponsored by:	Absolight
3.4.0_4
15 Nov 2014 12:20:54
Revision:372596Original commit files touched by this commit
antoine search for other commits by this committer
Cleanup plist
3.4.0_4
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
3.4.0_3
29 Jul 2014 20:55:28
Revision:363390Original commit files touched by this commit
adamw search for other commits by this committer
Repair instances, almost all courtesy of bf ;-), of spaces
and/or tabs before the =. This made doing regular expressions
on the ports tree really difficult.

Approved by:	portmgr (not really, but touches unstaged ports)
3.4.0_3
18 Jun 2014 14:56:30
Revision:358278Original commit files touched by this commit
vanilla search for other commits by this committer
1: Stagify.
2: USES=libtool, bump version.

Approved by:	portmgr@
3.4.0_2
10 Mar 2014 20:55:22
Revision:347809Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
3.4.0_1
21 Feb 2014 13:38:05
Revision:345420Original commit files touched by this commit
ehaupt search for other commits by this committer
Remove trailing whitespaces from category math
3.4.0_1
16 Feb 2014 17:15:32
Revision:344614Original commit files touched by this commit
tijl search for other commits by this committer
Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)
3.4.0_1
10 Feb 2014 13:54:28
Revision:343634Original commit files touched by this commit
ehaupt search for other commits by this committer
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
3.4.0_1
26 Oct 2013 00:52:36
Revision:331644Original commit files touched by this commit
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.4.0
29 Sep 2013 08:54:39
Revision:328652Original commit files touched by this commit
bf search for other commits by this committer
Update to 3.4.0

PR:		181873
3.3.0
20 Sep 2013 20:55:06
Revision:327746Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
math)
3.3.0
08 Mar 2013 11:32:12
Revision:313635Original commit files touched by this commit
bapt search for other commits by this committer
Convert USE_BISON to USES= bison

It brings bison as a build dependency in case it is set the following way:
USES= bison or USES= bison:build

it brings bison as a run dependency in case it is set the following way:
USES= bison:run

it brings bison both as a run and build dependency in case it the set the
following way:
USES= bison:both

While here trim some headers
Convert some USE_GNOME= gnomehack to USES= pathfix
3.3.0
01 Nov 2012 19:27:47
Revision:306820Original commit files touched by this commit
bf search for other commits by this committer
update to 3.3.0

Feature safe:	yes
3.2.0
14 Jul 2012 01:16:37
Original commit files touched by this commit
bf search for other commits by this committer
clean up pkg-descr and correct WWW; while here, switch to
the new options format
3.2.0
05 Jan 2012 13:16:02
Original commit files touched by this commit
bf search for other commits by this committer
update to 3.2.0, simplify, and fix NOPORTEXAMPLES
3.1.0
22 Nov 2011 11:14:10
Original commit files touched by this commit
bf search for other commits by this committer
adjust linking and comments in dependent ports after the math/atlas update;
math/atlas-devel will be updated to use the same constructs at a later date

PR:             162706
Approved by:    miwi (portmgr)
Feature safe:   yes
3.1.0
23 Sep 2011 22:26:39
Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav
3.1.0
12 Aug 2011 05:39:31
Original commit files touched by this commit
bf search for other commits by this committer
update to 3.1.0
3.0.0
30 Jul 2011 22:07:18
Original commit files touched by this commit
bf search for other commits by this committer
update to 3.0.0
2.2.0
26 Mar 2011 01:39:07
Original commit files touched by this commit
bf search for other commits by this committer
Remove addition of CPPFLAGS to CONFIGURE_ENV
in port Makefiles, and MD5 entries in distinfo
2.2.0
24 Jan 2011 04:12:30
Original commit files touched by this commit
bf search for other commits by this committer
-Chase some silent upstream distfile changes
-Clean-up port Makefile

Approved by:    makc, miwi (mentors, implicit)
Feature safe:   yes
2.2.0
20 Jan 2011 14:13:14
Original commit files touched by this commit
bf search for other commits by this committer
Update to 2.2.0

PR:             154053
Submitted by:   wen
Approved by:    makc, miwi (mentors, implicit)
Feature safe:   yes
2.1.0
08 Jul 2010 12:51:38
Original commit files touched by this commit
bf search for other commits by this committer
Change my ports to use my FreeBSD.org email address.
2.1.0
22 May 2010 06:11:46
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2.1.0

PR:             146611
Submitted by:   bf <bf1783@gmail.com> (maintainer)
2.0.0.20100430
10 May 2010 13:14:39
Original commit files touched by this commit
makc search for other commits by this committer
Update to 2.0.0-20100430
Rename port to mcmc-jags to avoid conflict with net/jags

PR:             ports/146180
Submitted by:   b.f. <bf1783 at gmail.com> (maintainer)
1.0.4_1
26 Apr 2010 01:31:17
Original commit files touched by this commit
wen search for other commits by this committer
- Bump PORTREVISION to chase the update of libRmath
1.0.4
02 Feb 2010 16:07:42
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 1.0.4

PR:             142051
Submitted by:   bf <bf1783@gmail.com> (maintainer)
1.0.3_4
13 Sep 2009 00:08:01
Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr
1.0.3_3
17 Aug 2009 19:50:53
Original commit files touched by this commit
erwin search for other commits by this committer
Fix plist

PR:             137882
Submitted by:   bf <bf1783@gmail.com> (maintainer)
1.0.3_2
14 Aug 2009 20:52:31
Original commit files touched by this commit
erwin search for other commits by this committer
Distfiles were rerolled with new examples and documentation

PR:             137777
Submitted by:   bf <bf1783@gmail.com> (maintainer)
1.0.3_1
07 Jun 2009 18:51:21
Original commit files touched by this commit
miwi search for other commits by this committer
- Update maintainer mail adresse

Submitted by:   "b. f." <bf1783@gmail.com> (maintainer via private mail)
1.0.3_1
21 Jan 2009 10:19:45
Original commit files touched by this commit
pav search for other commits by this committer
- fix location of pkgconfig data
- fix linker flags
- USE_LDCONFIG
- respect NOPORTEXAMPLES
- bump PORTREVISION

PR:             ports/130812
Submitted by:   bf <bf2006a@yahoo.com> (maintainer)
1.0.3
20 Jan 2009 04:26:03
Original commit files touched by this commit
gerald search for other commits by this committer
bf2006a@yahoo.com requested maintainership, reassign accordingly.

PR:             130723
1.0.3
19 Jan 2009 01:19:07
Original commit files touched by this commit
gerald search for other commits by this committer
Update from version 0.90 to 1.0.3, which appears to fix a compilation
problem.  Also removed F77 from CONFIGURE_ENV.  Resign maintainership,
moving to ports@FreeBSD.org.

Submitted by:   Eric van Gyzen <eric+fbports@vangyzen.net> (maintainer)
0.90_3
07 Jan 2009 16:34:27
Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
0.90_2
04 Oct 2007 01:49:29
Original commit files touched by this commit
edwin search for other commits by this committer
Remove always-false/true conditions based on OSVERSION 500000
0.90_2
17 Jul 2007 00:18:52
Original commit files touched by this commit
maho search for other commits by this committer
Now we use USE_FORTRAN=yes to use FORTRAN compiler.

Approved by:    maintainer
0.90_2
12 Jan 2007 08:00:59
Original commit files touched by this commit
maho search for other commits by this committer
Migrate to gfortran42.
Bump portrevision.

Approved by:    portmgr(kris)
0.90_1
30 Jan 2006 12:52:37
Original commit files touched by this commit
edwin search for other commits by this committer
SHA256ify
0.90_1
09 Jan 2006 19:34:11
Original commit files touched by this commit
ehaupt search for other commits by this committer
- Chase math/libRmath update (bump PORTREVISION)
- Pacify portlint
0.90
11 Nov 2005 06:49:03
Original commit files touched by this commit
sem search for other commits by this committer
- Remove commas from BROKEN message
0.90
09 Nov 2005 11:16:04
Original commit files touched by this commit
sem search for other commits by this committer
- Update to 0.90
- Change maintainer e-mail
- Mark BROKEN on 4.x

PR:             ports/87275
Submitted by:   maintainer
0.50
02 Sep 2004 16:18:13
Original commit files touched by this commit
arved search for other commits by this committer
Fix build with gcc 3.4

PR:             71206
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu>
0.50
27 May 2004 15:18:46
Original commit files touched by this commit
pav search for other commits by this committer
Add jags, Just Another Gibbs Sampler. A program for Bayesian analysis of
graphical models via Gibbs sampling, not wholy unlike classic BUGS.

PR:             ports/66648
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu>

Number of commits found: 73