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Port details
avogadro 1.1.1_3 science on this many watch lists=1 search for ports that depend on this port
Advanced molecular editor and viewer

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 22 May 2009 22:17:07
License: GPLv2


Avogadro is an advanced molecular editor designed for cross-platform use in
computational chemistry, molecular modeling, bioinformatics, materials science,
and related areas. It offers flexible rendering and a powerful plugin
architecture.

WWW: http://avogadro.openmolecules.net/wiki/Main_Page
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required To Build:
  1. math/eigen2
  2. math/py-numpy
  3. devel/py-sip
  4. devel/cmake
  5. devel/desktop-file-utils
  6. devel/pkgconf
  7. lang/python27
  8. lang/python2
  9. x11/glproto
  10. x11/dri2proto
  11. x11/glproto
  12. x11/dri2proto
  13. x11-toolkits/qt4-gui
  14. devel/qt4-linguist
  15. devel/qt4-moc
  16. net/qt4-network
  17. graphics/qt4-opengl
  18. devel/qmake4
  19. devel/qt4-rcc
  20. devel/qt4-uic
Required To Run:
  1. math/py-numpy
  2. devel/py-sip
  3. devel/desktop-file-utils
  4. lang/python27
  5. lang/python2
  6. x11-toolkits/qt4-gui
  7. net/qt4-network
  8. graphics/qt4-opengl
Required Libraries:
  1. science/openbabel
  2. devel/boost-python-libs
  3. graphics/libGLU
  4. graphics/libGL

This port is required by:

for Libraries * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

To install the port: cd /usr/ports/science/avogadro/ && make install clean
To add the package: pkg install science/avogadro


Configuration Options
===> The following configuration options are available for avogadro-1.1.1_3:
     PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings

Master Sites:
  1. http://aarnet.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  2. http://distcache.FreeBSD.org/ports-distfiles/
  3. http://downloads.sourceforge.net/project/avogadro/avogadro/1.1.1/
  4. http://freefr.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  5. http://garr.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  6. http://heanet.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  7. http://hivelocity.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  8. http://ignum.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  9. http://internode.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  10. http://iweb.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  11. http://jaist.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  12. http://kaz.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  13. http://kent.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  14. http://master.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  15. http://nchc.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  16. http://ncu.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  17. http://netcologne.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  18. http://sunet.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  19. http://superb-dca3.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  20. http://switch.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  21. http://tenet.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  22. http://ufpr.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/
  23. http://waix.dl.sourceforge.net/project/avogadro/avogadro/1.1.1/

Number of commits found: 39

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
10 Sep 2014 20:50:37
Original commit files touched by this commit  1.1.1_3
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
29 Jul 2014 18:41:17
Original commit files touched by this commit  1.1.1_2
Revision:363371  Sanity Test Failure
adamw search for other commits by this committer
Convert a bunch of USE_BZIP2 to USES=tar:bzip2

Approved by:	portmgr (not really, but touches unstaged ports)
10 Mar 2014 20:55:22
Original commit files touched by this commit  1.1.1_2
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
07 Feb 2014 11:44:09
Original commit files touched by this commit  1.1.1_1
Revision:343214
bapt search for other commits by this committer
Chase boost and icu bump
While here convert some LIB_DEPENDS
05 Feb 2014 19:01:34
Original commit files touched by this commit  1.1.1
Revision:342817
marino search for other commits by this committer
science/avogadro: Specify libGL explicitly with associated CFLAG
18 Dec 2013 23:33:20
Original commit files touched by this commit  1.1.1
Revision:336862
danilo search for other commits by this committer
- Update from 1.1.0 to 1.1.1
- Add desktop-file-utils to USES
- Add stage support

PR:		ports/184846
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
12 Dec 2013 14:15:04
Original commit files touched by this commit  1.1.0_1
Revision:336262
bapt search for other commits by this committer
Convert LIB_DEPENDS for ports depending on boost
02 Dec 2013 18:16:21
Original commit files touched by this commit  1.1.0_1
Revision:335524
makc search for other commits by this committer
Respect CMAKE_BUILD_TYPE
26 Oct 2013 00:52:36
Original commit files touched by this commit  1.1.0_1
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
22 Oct 2013 14:01:39
Original commit files touched by this commit  1.1.0
Revision:331274
amdmi3 search for other commits by this committer
- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with [st])

Approved by:	portmgr (bdrewery)
20 Sep 2013 22:48:31
Original commit files touched by this commit  1.1.0
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
14 Aug 2013 22:35:54
Refresh Original commit files touched by this commit
Revision:324744  Sanity Test Failure
ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
15 May 2013 05:16:51
Original commit files touched by this commit  1.1.0
Revision:318214
miwi search for other commits by this committer
- Backout previous commit

This got fixed in r318197

Reported by: fluffy/makc
15 May 2013 01:24:17
Original commit files touched by this commit  1.1.0
Revision:318213
miwi search for other commits by this committer
- Fix build with amd64

PR:		178583
Submitted by:	Ports Fury
14 May 2013 20:10:29
Original commit files touched by this commit  1.1.0
Revision:318197
rakuco search for other commits by this committer
Fix the build on 64-bits systems.

Add "-fPIC" to the compilation lines if `uname -p' returns "amd64"
(FreeBSD's case).

The patch has been submitted upstream.

PR:		ports/178537
10 May 2013 14:33:41
Original commit files touched by this commit  1.1.0
Revision:317808
miwi search for other commits by this committer
- Update to 1.1.0

PR:		177935
Submitted by:	Ports Fury
16 Apr 2013 16:00:09
Original commit files touched by this commit  1.0.3_2
Revision:315830
rene search for other commits by this committer
- Reset maintainer [1]

While here:
- convert Makefile header
- pet portlint (including USE_GNOME=pkgconfig -> USE_PKGCONFIG=yes)
- drop support for unsupported FreeBSD versions
- convert to optionsNG

Submitted by:	previous maintainer (tkjacobsen@gmail.com) [1] in
		http://lists.freebsd.org/pipermail/freebsd-ports/2013-April/082815.html
Feature safe:	yes
22 Mar 2013 20:06:15
Original commit files touched by this commit  1.0.3_2
Revision:314960
makc search for other commits by this committer
- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
11 Dec 2012 14:19:54
Original commit files touched by this commit  1.0.3_2
Revision:308694
makc search for other commits by this committer
science/openbabel:
- Update openbabel to 2.3.2
- Switch to CMake build system
- Add PYTHON and CAIRO options
- Don't rename babel binary, mark conflict with ancient biology/babel

science/py-openbabel:
- Merge py-openbabel to openbabel

other:
- chase openbabel update
01 Dec 2012 06:32:48
Original commit files touched by this commit  1.0.3_1
Revision:308063
rm search for other commits by this committer
- add patch to fix build with latest boost 1.48

while here:
- trim Makefile header
- remove indefinite article from COMMENT
- convert to optionsng
- strict python version to 2.x, because avogadro python code isn't 3.x-aware
- use PYTHON_PKGNAMEPREFIX in dependencies
- update WWW

PR:		173944
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
Feature safe:	yes
27 Jun 2012 01:14:01
Original commit files touched by this commit  1.0.3_1
avilla search for other commits by this committer
- Detect eigen2 by checking for .pc file, not min. port version.

If a user had eigen3 installed, but not eigen2, the min. port version
check would not differentiate between the two.

Submitted by:   Jason E. Hale <bsdkaffee at gmail.com> via area51
06 Jun 2012 06:44:38
Original commit files touched by this commit  1.0.3_1
miwi search for other commits by this committer
- Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4

Review by:      bapt, David Naylor (kde team)
01 Jun 2012 05:26:28
Original commit files touched by this commit  1.0.3_1
dinoex search for other commits by this committer
- update png to 1.5.10
16 May 2012 09:32:09
Original commit files touched by this commit  1.0.3
makc search for other commits by this committer
Fix plist: don't remove nonexistent directories when built WITHOUT_PYTHON

Pointyhat to:   makc
Noticed by:     fluffy
02 May 2012 22:35:15
Original commit files touched by this commit  1.0.3
makc search for other commits by this committer
- Update to 1.0.3
- Add patches and explicit dependency on graphics/libGLU to fix build
  with upcoming Qt-4.8.1
- Sort plist

PR:             ports/167525
Approved by:    Troels Kofoed Jacobsen (maintainer)
06 Sep 2011 23:30:43
Original commit files touched by this commit  1.0.1_1
avilla search for other commits by this committer
- Fix paths in installed CMake modules.
- Bump PORTREVISION.

Approved by:    Troels Kofoed Jacobsen (maintainer) via e-mail
03 Jul 2011 13:22:25
Original commit files touched by this commit  1.0.1
ohauer search for other commits by this committer
 - remove MD5
16 Jul 2010 01:29:59
Original commit files touched by this commit  1.0.1
sahil search for other commits by this committer
- Update to 1.0.1
- un-IGNORE when WITH_PYTHON is defined

PR:             ports/148399
Submitted by:   Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
27 Jun 2010 21:16:33
Original commit files touched by this commit  1.0.0_2
gerald search for other commits by this committer
Replace USE_GCC=4.3+ by USE_GCC=4.4+ (which, practically, is no change
since Mk/bsd.gcc.mk has been rewriting the former to the later for a bit.)

Approved by:    tkjacobsen@gmail.com (maintainer)
Feature safe:   yes
28 Mar 2010 06:47:48
Original commit files touched by this commit  1.0.0_2
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
30 Jan 2010 14:27:27
Original commit files touched by this commit  1.0.0_1
fluffy search for other commits by this committer
The KDE FreeBSD team is proud to announce the release of SIP-4.10 and
PyQt-4.7 for FreeBSD. The official update notes can be found at
http://www.riverbankcomputing.com

We'd like to say thanks to all helpers, testers and submitters.
19 Nov 2009 21:10:39
Original commit files touched by this commit  1.0.0
miwi search for other commits by this committer
- Update to 1.0.0

PR:             140538
Submitted by:   Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
14 Sep 2009 18:27:35
Original commit files touched by this commit  0.9.8
makc search for other commits by this committer
Update to 0.9.8

PR:             ports/138761
Submitted by:   Troels Kofoed Jacobsen (maintainer)
10 Aug 2009 17:16:46
Original commit files touched by this commit  0.9.7
makc search for other commits by this committer
Update to 0.9.7 and unbreak.

Approved by:    maintainer
09 Aug 2009 19:41:22
Original commit files touched by this commit  0.9.6
makc search for other commits by this committer
Mark broken after recent PyQt update
28 Jul 2009 11:45:09
Original commit files touched by this commit  0.9.6
pav search for other commits by this committer
- Update boost to 1.39
- Split boost port to separate components, with boost-all metaport

PR:             ports/137054
Submitted by:   Alexander Churanov <churanov.port.maintainer@gmail.com>
(maintainer)
07 Jun 2009 19:01:09
Original commit files touched by this commit  0.9.6
dhn search for other commits by this committer
- Update to 0.9.6

PR:             ports/135312
Submitted by:   Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
05 Jun 2009 23:06:58
Original commit files touched by this commit  0.9.5
amdmi3 search for other commits by this committer
- Update to 0.9.5

PR:             135263
Submitted by:   Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
22 May 2009 22:16:46
Original commit files touched by this commit  0.9.4
amdmi3 search for other commits by this committer
Avogadro is an advanced molecular editor designed for cross-platform use in
computational chemistry, molecular modeling, bioinformatics, materials science,
and related areas. It offers flexible rendering and a powerful plugin
architecture.

WWW: http://avogadro.openmolecules.net/

PR:             134710
Submitted by:   Troels Kofoed Jacobsen <tkjacobsen@gmail.com>

Number of commits found: 39

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