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Port details
ghmm General Hidden Markov Model Library in C
0.9.r3_2 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.9.r3_2Version of this port present on the latest quarterly branch.
Maintainer: bofh@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-07-28 03:37:20
Last Update: 2023-11-06 10:03:47
Commit Hash: 06df180
Also Listed In: math
License: GPLv3
WWW:
https://ghmm.sourceforge.net/
Description:
The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (50 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/ghmm-0.9.r3_2/catalog.mk
  3. /usr/local/share/licenses/ghmm-0.9.r3_2/LICENSE
  4. /usr/local/share/licenses/ghmm-0.9.r3_2/GPLv3
  5. bin/cluster
  6. bin/ghmm-config
  7. bin/probdist
  8. bin/scluster
  9. bin/smix_hmm
  10. include/ghmm/cfbgibbs.h
  11. include/ghmm/cluster.h
  12. include/ghmm/discrime.h
  13. include/ghmm/fbgibbs.h
  14. include/ghmm/foba.h
  15. include/ghmm/ghmm.h
  16. include/ghmm/ghmmconfig.h
  17. include/ghmm/gradescent.h
  18. include/ghmm/kbest.h
  19. include/ghmm/model.h
  20. include/ghmm/obsolete.h
  21. include/ghmm/pmodel.h
  22. include/ghmm/psequence.h
  23. include/ghmm/pviterbi.h
  24. include/ghmm/pviterbi_propagate.h
  25. include/ghmm/reestimate.h
  26. include/ghmm/rng.h
  27. include/ghmm/scanner.h
  28. include/ghmm/scluster.h
  29. include/ghmm/sdfoba.h
  30. include/ghmm/sdmodel.h
  31. include/ghmm/sequence.h
  32. include/ghmm/sfoba.h
  33. include/ghmm/sgenerate.h
  34. include/ghmm/smap_classify.h
  35. include/ghmm/smixturehmm.h
  36. include/ghmm/smodel.h
  37. include/ghmm/sreestimate.h
  38. include/ghmm/sviterbi.h
  39. include/ghmm/unsupported.h
  40. include/ghmm/viterbi.h
  41. include/ghmm/xmlreader.h
  42. include/ghmm/xmlwriter.h
  43. lib/libghmm.a
  44. lib/libghmm.so
  45. lib/libghmm.so.1
  46. lib/libghmm.so.1.0.0
  47. share/ghmm/ghmm.dtd.1.0
  48. @owner
  49. @group
  50. @mode
Collapse this list.
Dependency lines:
  • ghmm>0:science/ghmm
Conflicts:
CONFLICTS_INSTALL:
  • graphviz
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/science/ghmm/ && make install clean
To add the package, run one of these commands:
  • pkg install science/ghmm
  • pkg install ghmm
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: ghmm
Flavors: there is no flavor information for this port.
distinfo:
SHA256 (ghmm-0.9-rc3.tar.gz) = c42462ff4f87aadd5efe7bb6adb59657786ed71046ba924111bc28c7cbb588d0 SIZE (ghmm-0.9-rc3.tar.gz) = 770526

Packages (timestamps in pop-ups are UTC):
ghmm
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.9.r3_20.9.r3_20.9.r30.9.r3_20.9.r3_2-0.9.r3-
FreeBSD:13:quarterly0.9.r3_20.9.r3_20.9.r3_20.9.r3_20.9.r3_20.9.r3_20.9.r3_20.9.r3_2
FreeBSD:14:latest0.9.r3_20.9.r3_20.9.r3_20.9.r3_20.9.r3_20.9.r3_2-0.9.r3_2
FreeBSD:14:quarterly0.9.r3_20.9.r3_2-0.9.r3_20.9.r3_20.9.r3_20.9.r3_20.9.r3_2
FreeBSD:15:latest0.9.r3_20.9.r3_2n/a0.9.r3_2n/a0.9.r3_20.9.r3_20.9.r3_2
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. pkgconf>=1.3.0_1 : devel/pkgconf
  2. autoconf>=2.71 : devel/autoconf
  3. automake>=1.16.5 : devel/automake
  4. libtoolize : devel/libtool
Library dependencies:
  1. libxml2.so : textproc/libxml2
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_ghmm
USES:
autoreconf gnome libtool pkgconfig
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (56 items)
Collapse this list.
  1. http://cfhcable.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  2. http://cytranet.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  3. http://deac-ams.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  4. http://deac-fra.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  5. http://deac-riga.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  6. http://downloads.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  7. http://excellmedia.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  8. http://freefr.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  9. http://gigenet.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  10. http://ixpeering.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  11. http://jaist.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  12. http://jztkft.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  13. http://kumisystems.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  14. http://liquidtelecom.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  15. http://nchc.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  16. http://netactuate.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  17. http://netcologne.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  18. http://netix.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  19. http://onboardcloud.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  20. http://phoenixnap.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  21. http://razaoinfo.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  22. http://sinalbr.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  23. http://sitsa.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  24. http://sonik.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  25. http://tenet.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  26. http://udomain.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  27. http://ufpr.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  28. http://versaweb.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  29. https://cfhcable.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  30. https://cytranet.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  31. https://deac-ams.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  32. https://deac-fra.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  33. https://deac-riga.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  34. https://downloads.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  35. https://excellmedia.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  36. https://freefr.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  37. https://gigenet.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  38. https://ixpeering.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  39. https://jaist.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  40. https://jztkft.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  41. https://kumisystems.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  42. https://liquidtelecom.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  43. https://nchc.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  44. https://netactuate.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  45. https://netcologne.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  46. https://netix.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  47. https://onboardcloud.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  48. https://phoenixnap.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  49. https://razaoinfo.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  50. https://sinalbr.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  51. https://sitsa.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  52. https://sonik.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  53. https://tenet.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  54. https://udomain.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  55. https://ufpr.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
  56. https://versaweb.dl.sourceforge.net/project/ghmm/ghmm/ghmm%200.9-rc3/
Collapse this list.

Number of commits found: 27

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.9.r3_2
06 Nov 2023 10:03:47
commit hash: 06df180a9e39055026499a326ef67812801a8919commit hash: 06df180a9e39055026499a326ef67812801a8919commit hash: 06df180a9e39055026499a326ef67812801a8919commit hash: 06df180a9e39055026499a326ef67812801a8919 files touched by this commit
Rodrigo Osorio (rodrigo) search for other commits by this committer
*/*: Update WWW to use HTTPS for sourceforge.net projects

Homepage link is permanent redirected to its HTTPS counterpart
Issue reported by repology : https://repology.org/repository/freebsd/problems

Approved by:	portmgr (blanket)
PR:		274888
0.9.r3_2
06 Jun 2023 17:47:39
commit hash: 1a4fd51f91cfe3c27b9c0ba8b96d75dcdc812a21commit hash: 1a4fd51f91cfe3c27b9c0ba8b96d75dcdc812a21commit hash: 1a4fd51f91cfe3c27b9c0ba8b96d75dcdc812a21commit hash: 1a4fd51f91cfe3c27b9c0ba8b96d75dcdc812a21 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
science/ghmm: Fix build with llvm15

- Pet portclippy
- Adopt port
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.9.r3_2
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.9.r3_2
20 Jul 2022 14:22:51
commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.9.r3_2
10 Apr 2022 19:11:41
commit hash: d63665f7cd9c99880704a3c5bc221829cb009744commit hash: d63665f7cd9c99880704a3c5bc221829cb009744commit hash: d63665f7cd9c99880704a3c5bc221829cb009744commit hash: d63665f7cd9c99880704a3c5bc221829cb009744 files touched by this commit
Charlie Li (vishwin) search for other commits by this committer
textproc/libxml2: bump all LIB_DEPENDS consumers

This is a separate commit to facilitate easier cherry-picking for
quarterly.

PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)
0.9.r3_1
26 Mar 2022 08:27:27
commit hash: 247c7db7513f1264922428278678da641c5a3f52commit hash: 247c7db7513f1264922428278678da641c5a3f52commit hash: 247c7db7513f1264922428278678da641c5a3f52commit hash: 247c7db7513f1264922428278678da641c5a3f52 files touched by this commit
Matthias Fechner (mfechner) search for other commits by this committer
textproc/libxml2: bump all dependencies

This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246
0.9.r3
10 Jan 2022 15:15:39
commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Fix CONFLICTS entries of multiple ports

There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.

This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.

Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.9.r3
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
0.9.r3
08 Nov 2019 13:22:59
Revision:517059Original commit files touched by this commit
tobik search for other commits by this committer
print, science: Add missing USES=gnome
0.9.r3
19 May 2016 10:53:06
Revision:415500Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [p-x]*

Approved by:	portmgr blanket
0.9.r3
01 Apr 2016 14:25:18
Revision:412349Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
0.9.r3
18 Sep 2015 06:16:31
Revision:397226Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.9.r3
- Add LICENSE
- Pet portlint
0.7.0b_1
02 Dec 2014 22:40:57
Revision:373790Original commit files touched by this commit
bapt search for other commits by this committer
Reset maintainership:
- Lots of maintainers timeout
- unresponsive for almost a year

PR:		195059
0.7.0b_1
12 Nov 2014 18:48:53
Revision:372500Original commit files touched by this commit
antoine search for other commits by this committer
Cleanup plist
0.7.0b_1
08 Jul 2014 14:50:22
Revision:361254Original commit files touched by this commit
tijl search for other commits by this committer
- Convert to USES=libtool
- Add INSTALL_TARGET=install-strip
0.7.0b
21 Jan 2014 23:40:23
Revision:340674Original commit files touched by this commit
bapt search for other commits by this committer
Fix properties on pkg-plist
0.7.0b
25 Sep 2013 00:54:09
Revision:328226Original commit files touched by this commit
bdrewery search for other commits by this committer
- Remove NO_STAGE as these have been tested to be safe

With hat:	portmgr
0.7.0b
20 Sep 2013 22:48:31
Revision:327767Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
0.7.0b
03 Jul 2011 13:22:25
Original commit files touched by this commit
ohauer search for other commits by this committer
 - remove MD5
0.7.0b
04 Dec 2010 07:34:27
Original commit files touched by this commit
ade search for other commits by this committer
Sync to new bsd.autotools.mk
0.7.0b
22 Aug 2009 00:35:32
Original commit files touched by this commit Sanity Test Failure
amdmi3 search for other commits by this committer
- Switch SourceForge ports to the new File Release System: categories starting
with P,R,S
0.7.0b
02 Aug 2009 19:36:34
Original commit files touched by this commit
mezz search for other commits by this committer
-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
-Update libtool and libltdl to 2.2.6a.
-Remove devel/libtool15 and devel/libltdl15.
-Fix ports build with libtool22/libltdl22.
-Bump ports that depend on libltdl22 due to shared library version change.
-Explain what to do update in the UPDATING.

It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop
and applications in the runtime.

With help:      marcus and kwm
Pointyhat-exp:  a few times by pav
Tested by:      pgollucci, "Romain Tartière" <romain@blogreen.org>, and
                a few MarcusCom CVS users. Also, I might have missed a few.
Repocopy by:    marcus
Approved by:    portmgr
0.7.0b
01 Feb 2007 02:42:06
Original commit files touched by this commit
kris search for other commits by this committer
Use libtool port instead of included version to avoid objformat a.out botch
0.7.0b
02 Nov 2006 09:25:57
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 0.7.0b
- from Changes
  * fixed a bug in reestimate_setlambda
0.7.0a
15 Aug 2006 01:45:58
Original commit files touched by this commit
clsung search for other commits by this committer
- s,INSTALLS_SHLIB,USE_LDCONFIG,g

PR:             ports/101916
Submitted by:   Gea-Suan Lin <gslin_AT_gslin dot org>
0.7.0a
28 Jul 2006 03:36:25
Original commit files touched by this commit
clsung search for other commits by this committer
Add ghmm 0.7.0a, general Hidden Markov Model Library in C.

PR:             ports/100886
Submitted by:   Cheng-Lung Sung <clsung at FreeBSD.org>

Number of commits found: 27