hs-bio 0.5.1 science =0

A Haskell bioinformatics library
Maintained by: haskell@FreeBSD.org
Port Added: 03 Jan 2010 05:02:40
Also Listed In: haskell
License: LGPL21

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This is a collection of Haskell data structures and algorithms useful
for building bioinformatics-related tools and utilities.

Current list of features includes: a Sequence data type supporting
protein and nucleotide sequences and conversion between them.

WWW:	http://biohaskell.org/Libraries/Bio

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: lang/ghc, lang/ghc, devel/hs-binary, devel/hs-mtl, devel/hs-parallel, textproc/hs-parsec, devel/hs-QuickCheck, textproc/hs-tagsoup, devel/hs-haddock
Required To Run: lang/ghc, lang/ghc, devel/hs-binary, devel/hs-mtl, devel/hs-parallel, textproc/hs-parsec, devel/hs-QuickCheck, textproc/hs-tagsoup
Required Libraries: math/gmp, converters/libiconv
There are no ports dependent upon this port

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To install the port: cd /usr/ports/science/hs-bio/ && make install clean
To add the package: pkg_add -r hs-bio

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Configuration Options

     No options to configure

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Master Sites:

http://hackage.haskell.org/packages/archive/bio/0.5.1/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/cabal/

• 2012-02-13

  Affects: users of lang/ghc and */hs-*

  Author: pgj@FreeBSD.org

  Reason: 
    GHC has been updated to version 7.0.4, and Haskell Platform to version
    2011.4.0.0, and other Haskell ports are also updated to their Haskell
    Platform versions or latest versions.
  
    To update all affected ports:
  
    # portmaster -r lang/ghc
    or
    # portupgrade -r lang/ghc
  
  



• 2011-05-09

  Affects: users of lang/ghc and */hs-*

  Author: ashish@FreeBSD.org

  Reason: 
    GHC has been updated to version 7.0.3 and other Haskell ports are also
    updated to their Haskell Platform versions or latest versions.
  
    To update all affected ports:
  
    # portmaster -r lang/ghc
    or
    # portupgrade -r lang/ghc
  
  

- Update to 0.5.1

Obtained from:  FreeBSD Haskell

- Update to 0.5.0.1

Obtained from:  FreeBSD Haskell

- Update textproc/hs-tagsoup to 0.12.2.
- Bump PORTREVISION of dependent ports on textproc/hs-tagsoup, i.e.
  devel/h-hoogle, science/hs-bio, and textproc/pandoc.

PR:             ports/157826
Submitted by:   Jin-Sih Lin <linpct@gmail.com>

Bump PORTREVISION of all ports dependent on lang/ghc as during
upgrade, lang/ghc cabal package cache gets invalidated causing all
dependent ports to be reinstalled.

Obtained from:  FreeBSD Haskell

- Please welcome GHC 7.0.3

GHC in the ports tree has been updated to 7.0.3 and all other Haskell ports
are also updated to their corresponding Haskell Platform versions, or latest
versions.

We would like to acknowledge the support of the FreeBSD Donations Team and
Eotvos Lorand University, Faculty of Informatics who contributed to the server
that we used for testing.

We would also like to thank all the testers who tested FreeBSD Haskell ports
and provided their feedback.

PR:             ports/156642
Approved by:    tabthorpe (mentor)
Obtained from:  FreeBSD Haskell

- Add DIST_SUBDIR for Haskell Cabal ports (with default of "cabal")

Suggested by:   admi3

- Update to 0.4.6

- Pass maintainership to haskell@FreeBSD.org:

    audio/hs-ALUT, audio/hs-OpenAL, benchmarks/hs-criterion
    converters/hs-json, devel/hs-DeepArrow, devel/hs-FileManip
    devel/hs-MemoTrie, devel/hs-MissingH, devel/hs-MonadCatchIO-mtl
    devel/hs-ObjectName, devel/hs-QuickCheck, devel/hs-StateVar
    devel/hs-Tensor, devel/hs-TypeCompose, devel/hs-arrows
    devel/hs-checkers, devel/hs-convertible, devel/hs-datetime
    devel/hs-deepseq, devel/hs-fgl, devel/hs-ghc-mtl, devel/hs-ghc-paths
    devel/hs-ghc-paths-docs, devel/hs-haskeline
    devel/hs-haskell-src-exts, devel/hs-hint, devel/hs-hoogle
    devel/hs-hslogger, devel/hs-mmap, devel/hs-mueval, devel/hs-reactive
    devel/hs-readline, devel/hs-safe, devel/hs-show, devel/hs-smallcheck
    devel/hs-split, devel/hs-testpack, devel/hs-transformers
    devel/hs-unamb, devel/hs-uniplate, devel/hs-unix-compat

- Fix build problem caused by the recent textproc/hs-tagsoup update
- Port PORTREVISION
- Tidy up pkg-descr

Reported by:    LambdaBSD-exp
Approved by:    jacula (maintainer)

Introduce a new (and hopefully better) ports infrastructure for Haskell Cabal
ports which makes possible the direct translation of Cabal package
descriptions to FreeBSD ports.  It promises both easier addition and
maintenance for Cabal-based ports.

This is a collection of Haskell data structures and algorithms useful for
building bioinformatics-related tools and utilities.
Current list of features includes: a Sequence data type supporting
protein and nucleotide sequences and conversion between them.

WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/

PR:             ports/142187
Submitted by:   Jacula Modyun <jacula(at)gmail.com>

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities