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Port details
R-cran-BiocManager Convenient tool to install and update Bioconductor packages
1.30.26 biology on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.30.25Version of this port present on the latest quarterly branch.
Maintainer: atanubiswas484@gmail.com search for ports maintained by this maintainer
Port Added: 2023-12-15 12:57:04
Last Update: 2025-07-15 05:27:51
Commit Hash: 5da9972
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py311-PyOpenGL, p5-Sane
License: ART20
WWW:
https://cran.r-project.org/web/packages/BiocManager/
Description:
The BiocManager package, as the modern successor package to BiocInstaller, allows users to install and manage packages from the Bioconductor project. Bioconductor focuses on the statistical analysis and comprehension of high-throughput genomic data.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/R-cran-BiocManager-1.30.26/catalog.mk
  2. /usr/local/share/licenses/R-cran-BiocManager-1.30.26/LICENSE
  3. /usr/local/share/licenses/R-cran-BiocManager-1.30.26/ART20
Collapse this list.
Dependency lines:
  • R-cran-BiocManager>0:biology/R-cran-BiocManager
To install the port:
cd /usr/ports/biology/R-cran-BiocManager/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/R-cran-BiocManager
  • pkg install R-cran-BiocManager
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: R-cran-BiocManager
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1750881870 SHA256 (BiocManager_1.30.26.tar.gz) = db9a67556f8f46f41a86dc2abb2c19d354cdf537d4a1b48132896946eb45a23e SIZE (BiocManager_1.30.26.tar.gz) = 594489
Packages (timestamps in pop-ups are UTC):
R-cran-BiocManager
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.30.261.30.26-1.30.261.30.26---
FreeBSD:13:quarterly1.30.251.30.25-1.30.251.30.25-1.30.221.30.22
FreeBSD:14:latest1.30.261.30.26-1.30.261.30.26---
FreeBSD:14:quarterly1.30.251.30.25-1.30.251.30.25-1.30.221.30.22
FreeBSD:15:latest1.30.261.30.26n/a1.30.26n/a-1.30.221.30.22
FreeBSD:15:quarterly--n/a-n/a---
FreeBSD:16:latest-1.30.26n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. R : math/R
  2. gfortran13 : lang/gcc13
  3. as : devel/binutils
Test dependencies:
  1. R-cran-curl>0 : ftp/R-cran-curl
  2. R-cran-knitr>0 : print/R-cran-knitr
  3. R-cran-remotes>0 : devel/R-cran-remotes
  4. R-cran-rmarkdown>0 : textproc/R-cran-rmarkdown
  5. R-cran-testthat>0 : devel/R-cran-testthat
  6. R-cran-withr>0 : devel/R-cran-withr
Runtime dependencies:
  1. R : math/R
  2. gfortran13 : lang/gcc13
This port is required by:
for Build
  1. math/R-cran-NMF
for Run
  1. math/R-cran-NMF
Configuration Options:
No options to configure
Options name:
biology_R-cran-BiocManager
USES:
cran:auto-plist,compiles
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (14 items)
Collapse this list.
  1. http://cran.utstat.utoronto.ca/src/contrib/
  2. http://cran.utstat.utoronto.ca/src/contrib/Archive/BiocManager/
  3. https://cloud.r-project.org/src/contrib/
  4. https://cloud.r-project.org/src/contrib/Archive/BiocManager/
  5. https://cran.csiro.au/src/contrib/
  6. https://cran.csiro.au/src/contrib/Archive/BiocManager/
  7. https://cran.ma.imperial.ac.uk/src/contrib/
  8. https://cran.ma.imperial.ac.uk/src/contrib/Archive/BiocManager/
  9. https://mirror.las.iastate.edu/CRAN/src/contrib/
  10. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/BiocManager/
  11. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
  12. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/BiocManager/
  13. https://stat.ethz.ch/CRAN/src/contrib/
  14. https://stat.ethz.ch/CRAN/src/contrib/Archive/BiocManager/
Collapse this list.

Number of commits found: 7

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.30.26
15 Jul 2025 05:27:51
commit hash: 5da99728470aaefa7df4e8d433acb984f1074b8bcommit hash: 5da99728470aaefa7df4e8d433acb984f1074b8bcommit hash: 5da99728470aaefa7df4e8d433acb984f1074b8bcommit hash: 5da99728470aaefa7df4e8d433acb984f1074b8b files touched by this commit		 Zsolt Udvari (uzsolt) search for other commits by this committer
Author: Atanu Biswas		 
biology/R-cran-BiocManager: Update to 1.30.26

Add test dependencies and TESTING_UNSAFE.
Submitter takes maintainership.

Changelog: https://cran.r-project.org/web/packages/BiocManager/NEWS

PR:		287891
1.30.25
27 Apr 2025 09:48:13
commit hash: 93078cd6b2dc86dbd6a54ee54bb6e4de14378db4commit hash: 93078cd6b2dc86dbd6a54ee54bb6e4de14378db4commit hash: 93078cd6b2dc86dbd6a54ee54bb6e4de14378db4commit hash: 93078cd6b2dc86dbd6a54ee54bb6e4de14378db4 files touched by this commit		 Muhammad Moinur Rahman (bofh) search for other commits by this committer 
biology/R-cran-BiocManager: Return to pool
1.30.25
08 Sep 2024 17:28:55
commit hash: 1234567fc7774042ec5ba1d20bc7542d8ee277decommit hash: 1234567fc7774042ec5ba1d20bc7542d8ee277decommit hash: 1234567fc7774042ec5ba1d20bc7542d8ee277decommit hash: 1234567fc7774042ec5ba1d20bc7542d8ee277de files touched by this commit		 Muhammad Moinur Rahman (bofh) search for other commits by this committer 
biology/R-cran-BiocManager: Update version 1.30.24=>1.30.25

Changelog: https://github.com/Bioconductor/BiocManager/releases/tag/v1.30.25
1.30.24
30 Aug 2024 08:21:23
commit hash: 27f2ce136483f481b137f9786ffa97d9a1253905commit hash: 27f2ce136483f481b137f9786ffa97d9a1253905commit hash: 27f2ce136483f481b137f9786ffa97d9a1253905commit hash: 27f2ce136483f481b137f9786ffa97d9a1253905 files touched by this commit		 Muhammad Moinur Rahman (bofh) search for other commits by this committer 
biology/R-cran-BiocManager: Update version 1.30.23=>1.30.24

Changelog: https://github.com/Bioconductor/BiocManager/releases/tag/v1.30.24
1.30.23
23 Aug 2024 00:56:00
commit hash: 71eb1560672080dc6ef94231516ba7e6db11a429commit hash: 71eb1560672080dc6ef94231516ba7e6db11a429commit hash: 71eb1560672080dc6ef94231516ba7e6db11a429commit hash: 71eb1560672080dc6ef94231516ba7e6db11a429 files touched by this commit		 Muhammad Moinur Rahman (bofh) search for other commits by this committer 
biology/R-cran-BiocManager: Skip pre-release version in portscout
1.30.23
11 May 2024 23:10:24
commit hash: 5e4d2db5ebfbe721a59a151ccd637492ce9c8c87commit hash: 5e4d2db5ebfbe721a59a151ccd637492ce9c8c87commit hash: 5e4d2db5ebfbe721a59a151ccd637492ce9c8c87commit hash: 5e4d2db5ebfbe721a59a151ccd637492ce9c8c87 files touched by this commit		 Muhammad Moinur Rahman (bofh) search for other commits by this committer 
biology/R-cran-BiocManager: Update version 1.30.22=>1.30.23

Changelog: https://github.com/Bioconductor/BiocManager/releases/tag/v1.30.23
1.30.22
15 Dec 2023 12:55:43
commit hash: 5051eb68b9167a5e565a8e24aaa7989f0ea51196commit hash: 5051eb68b9167a5e565a8e24aaa7989f0ea51196commit hash: 5051eb68b9167a5e565a8e24aaa7989f0ea51196commit hash: 5051eb68b9167a5e565a8e24aaa7989f0ea51196 files touched by this commit		 Muhammad Moinur Rahman (bofh) search for other commits by this committer 
biology/R-cran-BiocManager: New port

The BiocManager package, as the modern successor package to
BiocInstaller, allows users to install and manage packages from the
Bioconductor project. Bioconductor focuses on the statistical analysis
and comprehension of high-throughput genomic data.

WWW: https://bioconductor.github.io/BiocManager/

Number of commits found: 7
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