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The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

Port details
ariadne Programs to compare protein sequences and profiles
1.3 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 1.3Version of this port present on the latest quarterly branch.
Broken BROKEN: No public distfiles
Deprecated DEPRECATED: Broken for more than 6 months
Expired This port expired on: 2018-06-06
Ignore IGNORE: is marked as broken: No public distfiles
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
search for ports maintained by this maintainer
Port Added: 2004-06-22 14:31:00
Last Update: 2018-06-07 01:34:18
SVN Revision: 471892
License: not specified in port
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (2 items)
  1. bin/ariadne
  2. bin/prospero
Collapse this list.
Dependency lines:
  • ariadne>0:biology/ariadne
No installation instructions: this port has been deleted.
The package name of this deleted port was:
PKGNAME: ariadne
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake : devel/gmake
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. http://www.well.ox.ac.uk/ariadne/
Port Moves
  • port deleted on 2018-06-07
    REASON: Has expired: Broken for more than 6 months

Number of commits found: 16

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Jun 2018 00:34:18
Original commit files touched by this commit  1.3
Revision:471892
rene search for other commits by this committer
Remove expired ports:
2018-06-06 biology/ssaha: Broken for more than 6 months
2018-06-06 biology/crux: Broken for more than 6 months
2018-06-06 biology/ariadne: Broken for more than 6 months
2018-06-06 cad/sceptre: Broken for more than 6 months
2018-06-06 cad/cider: Broken for more than 6 months
2018-06-06 chinese/scim-array: Broken for more than 6 months
2018-06-06 chinese/xpdf: Broken for more than 6 months
2018-06-06 chinese/telnet: Broken for more than 6 months
2018-06-06 comms/java-commapi-freebsd: Depends on BROKEN and expiring
comms/java-commapi
2018-06-06 comms/soundmodem: Broken for more than 6 months
2018-06-06 comms/jsdr: Broken for more than 6 months
2018-06-06 comms/java-commapi: Broken for more than 6 months
2018-06-06 converters/pdf2djvu: Broken for more than 6 months
2018-06-06 databases/rdb: Broken for more than 6 months
(Only the first 15 lines of the commit message are shown above View all of this commit message)
05 May 2018 10:49:36
Original commit files touched by this commit  1.3
Revision:469100
antoine search for other commits by this committer
Deprecate ports broken for more than 6 months
13 Oct 2017 11:14:53
Original commit files touched by this commit  1.3
Revision:451982  Sanity Test Failure
bapt search for other commits by this committer
Mark as broken ports with no public distfiles
20 Jul 2016 15:33:20
Original commit files touched by this commit  1.3
Revision:418840
mat search for other commits by this committer
Cleanup $() variables in ports Makefiles.

Mostly replace with ${}, but sometime, replace with $$() because it is
what was intended in the first place. (I think.)

Sponsored by:	Absolight
19 May 2016 10:21:25
Original commit files touched by this commit  1.3
Revision:415498
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
24 Mar 2015 16:01:22
Original commit files touched by this commit  1.3
Revision:382111
marino search for other commits by this committer
6 ports categories: Remove $PTHREAD_LIBS

Categories: cad, devel, java, x11-fm, biology, deskutils

approved by:	PTHREAD blanket
21 Jan 2015 18:39:12
Original commit files touched by this commit  1.3
Revision:377623
marino search for other commits by this committer
misc/otter & biology/ariadne: Not jobs safe

The otter port tries to build libotter.a before an object is completely
built (share.o in my case) and ariadne tries to start building in a
directory before it is created (under multiple jobs).
29 Jul 2014 19:11:53
Original commit files touched by this commit  1.3
Revision:363374
adamw search for other commits by this committer
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)
12 Nov 2013 21:54:36
Original commit files touched by this commit  1.3
Revision:333626
bapt search for other commits by this committer
Stage support
drop USE_GMAKE
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.3
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
19 Jun 2013 14:10:03
Original commit files touched by this commit  1.3
Revision:321252
bsam search for other commits by this committer
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PLIST_FILES and PORTDOCS;
. remove pkg-plist (4 lines).
01 Oct 2012 14:45:17
Original commit files touched by this commit  1.3
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.3

miwi search for other commits by this committer
- Get Rid MD5 support
03 May 2006 23:26:35
Original commit files touched by this commit  1.3

edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.3

edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
22 Jun 2004 14:29:59
Original commit files touched by this commit  1.3

krion search for other commits by this committer
Add ariadne 1.3, programs to compare protein sequences and
profiles, using the Smith-Waterman algorithm.

PR:             ports/67811
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 16

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