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Port details
barrnap BAsic Rapid Ribosomal RNA Predictor
0.9 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.9Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-11-25 03:09:22
Last Update: 2022-11-25 03:12:18
Commit Hash: 20cc8e4
Also Listed In: science
License: GPLv3
WWW:
https://github.com/tseemann/barrnap
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), metazoan mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new nhmmer tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (11 items)
Collapse this list.
  1. /usr/local/share/licenses/barrnap-0.9/catalog.mk
  2. /usr/local/share/licenses/barrnap-0.9/LICENSE
  3. /usr/local/share/licenses/barrnap-0.9/GPLv3
  4. bin/barrnap
  5. share/barrnap/db/arc.hmm
  6. share/barrnap/db/bac.hmm
  7. share/barrnap/db/euk.hmm
  8. share/barrnap/db/mito.hmm
  9. @owner
  10. @group
  11. @mode
Collapse this list.
Dependency lines:
  • barrnap>0:biology/barrnap
To install the port:
cd /usr/ports/biology/barrnap/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/barrnap
  • pkg install barrnap
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: barrnap
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1669343398 SHA256 (tseemann-barrnap-0.9_GH0.tar.gz) = 36c27cd4350531d98b3b2fb7d294a2d35c15b7365771476456d7873ba33cce15 SIZE (tseemann-barrnap-0.9_GH0.tar.gz) = 11837541

Packages (timestamps in pop-ups are UTC):
barrnap
ABIlatestquarterly
FreeBSD:13:aarch64--
FreeBSD:13:amd640.90.9
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3860.90.9
FreeBSD:13:powerpc-0.9
FreeBSD:13:powerpc64-0.9
FreeBSD:13:powerpc64le--
FreeBSD:14:aarch64--
FreeBSD:14:amd640.90.9
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3860.90.9
FreeBSD:14:powerpc0.90.9
FreeBSD:14:powerpc64-0.9
FreeBSD:14:powerpc64le--
FreeBSD:15:aarch64--
FreeBSD:15:amd640.9-
FreeBSD:15:armv7--
FreeBSD:15:powerpc0.9-
FreeBSD:15:powerpc640.9-
FreeBSD:15:powerpc64le--
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
  2. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. bedtools : biology/bedtools
  2. nhmmer : biology/hmmer
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_barrnap
USES:
gmake perl5
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://codeload.github.com/tseemann/barrnap/tar.gz/0.9?dummy=/
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Number of commits found: 2

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.9
25 Nov 2022 03:12:18
commit hash: 20cc8e440a21cd4ea800573e7fc1edeebc49444dcommit hash: 20cc8e440a21cd4ea800573e7fc1edeebc49444dcommit hash: 20cc8e440a21cd4ea800573e7fc1edeebc49444dcommit hash: 20cc8e440a21cd4ea800573e7fc1edeebc49444d files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/barrnap: Update descr
0.9
25 Nov 2022 03:08:42
commit hash: a7eec55e9ca07d154f1de127c3ecc6187bce06d6commit hash: a7eec55e9ca07d154f1de127c3ecc6187bce06d6commit hash: a7eec55e9ca07d154f1de127c3ecc6187bce06d6commit hash: a7eec55e9ca07d154f1de127c3ecc6187bce06d6 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/barrnap: New port: BAsic Rapid Ribosomal RNA Predictor

Number of commits found: 2