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Two new features

Two new features were added on 2020-05-30:
  1. Repology links - each port now has a link to repology.org. See issue 148 for details.
  2. Ports I maintain report - port maintainers can now subscribe to a daily report of commits to the ports they maintain. See Watch ports I maintain at Report Subscriptions. Details at issue 138
non port: biology/bcftools/Makefile
SVNWeb

Number of commits found XX: 13

Mon, 3 Aug 2020
[ 18:16 jwb ] Original commit   Revision:544096
544096 biology/bcftools/Makefile
544096 biology/bcftools/distinfo
544096 biology/bcftools/files/patch-Makefile
544096 biology/bcftools/files/patch-prob1.c
544096 biology/bcftools/files/patch-test_test.pl
544096 biology/bcftools/pkg-plist
biology/bcftools: Upgrade to 1.10.2

Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/bcftools/tags

Take maintainership per ports/248089.

PR:             ports/248089
[ 17:40 jwb ] Original commit   Revision:544090
544090 biology/bcftools/Makefile
544090 biology/cufflinks/Makefile
544090 biology/htslib/Makefile
544090 biology/htslib/distinfo
544090 biology/htslib/files/patch-Makefile
544090 biology/htslib/files/patch-hfile__libcurl.c
544090 biology/htslib/pkg-plist
544090 biology/jellyfish/Makefile
544090 biology/pbbam/Makefile
544090 biology/samtools/Makefile

(Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
biology/htslib: Upgrade to 1.10.2

Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags

Bump PORTREVISION on dependents that don't require additional patching

PR:             248089
Fri, 25 Oct 2019
[ 23:41 tcberner ] Original commit   Revision:515671
515671 astro/gnuastro/Makefile
515671 astro/siril/Makefile
515671 audio/p5-Audio/Makefile
515671 audio/snd/Makefile
515671 benchmarks/flowgrind/Makefile
515671 biology/bcftools/Makefile
515671 biology/gemma/Makefile
515671 biology/viennarna/Makefile
515671 comms/gnuradio/Makefile
515671 editors/calligra/Makefile

(Only the first 10 of 64 ports in this commit are shown above. View all ports for this commit)
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
Thu, 2 Aug 2018
[ 19:30 fernape ] Original commit   Revision:476247
476247 biology/bcftools/Makefile
476247 biology/bcftools/distinfo
476247 biology/bcftools/files/patch-Makefile
476247 biology/bcftools/files/patch-configure.ac
476247 biology/bcftools/pkg-plist
biology/bcftools: update to 1.9

While here:

* Update LICENSE handling
* Move all commands to bin/

PR:	230169
Submitted by:	ndowens.fbsd@yandex.com
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16543
Sat, 23 Jun 2018
[ 08:27 tcberner ] Original commit   Revision:473116
473116 astro/siril/Makefile
473116 audio/snd/Makefile
473116 benchmarks/flowgrind/Makefile
473116 biology/bcftools/Makefile
473116 comms/gnuradio/Makefile
473116 graphics/amide/Makefile
473116 graphics/enblend/Makefile
473116 graphics/inkscape/Makefile
473116 graphics/krita/Makefile
473116 graphics/luminance-qt5/Makefile

(Only the first 10 of 47 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 2.5

PR:		229067
Mon, 4 Dec 2017
[ 15:27 mat ] Original commit   Revision:455518
455518 Mk/Uses/python.mk
455518 biology/bcftools/Makefile
455518 biology/samtools/Makefile
455518 security/metasploit/Makefile
Add a USES=python:env, that will not add a dependency on Python.

It has the same effect than setting PYTHON_NO_DEPENDS, but in a more
compact way.

Sponsored by:	Absolight
Wed, 25 Oct 2017
[ 10:19 pizzamig ] Original commit   Revision:452840
452840 biology/bcftools/Makefile
452840 biology/bcftools/distinfo
452840 biology/bcftools/files/patch-Makefile
452840 biology/bcftools/files/patch-configure.ac
452840 biology/bcftools/files/patch-misc_run-roh.pl
452840 biology/bcftools/files/patch-prob1.c
452840 biology/bcftools/files/patch-test_test.pl
452840 biology/bcftools/files/pkg-message.in
452840 biology/bcftools/pkg-plist
452840 biology/htslib/Makefile

(Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
biology/htslib biology/bcftools biology/samtools: Update to 1.6

PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
Mon, 3 Jul 2017
[ 20:38 tcberner ] Original commit   Revision:444988
444988 audio/snd/Makefile
444988 benchmarks/flowgrind/Makefile
444988 biology/bcftools/Makefile
444988 comms/gnuradio/Makefile
444988 editors/calligra/Makefile
444988 graphics/amide/Makefile
444988 graphics/enblend/Makefile
444988 graphics/inkscape/Makefile
444988 graphics/krita/Makefile
444988 graphics/luminance-qt5/Makefile

(Only the first 10 of 42 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408
Tue, 2 May 2017
[ 05:26 tcberner ] Original commit   Revision:439928
439928 audio/snd/Makefile
439928 benchmarks/flowgrind/Makefile
439928 biology/bcftools/Makefile
439928 comms/gnuradio/Makefile
439928 editors/calligra/Makefile
439928 graphics/amide/Makefile
439928 graphics/amide/files/patch-gsl_2x
439928 graphics/enblend/Makefile
439928 graphics/inkscape/Makefile
439928 graphics/luminance-qt5/Makefile

(Only the first 10 of 46 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522
Thu, 26 May 2016
[ 20:28 pi ] Original commit   Revision:415914
415914 biology/bcftools/Makefile
415914 biology/bcftools/distinfo
415914 biology/bcftools/pkg-plist
415914 biology/htslib/Makefile
415914 biology/htslib/distinfo
415914 biology/samtools/Makefile
415914 biology/samtools/distinfo
415914 biology/samtools/files/patch-Makefile
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1

Changes:
  https://sourceforge.net/p/samtools/mailman/message/35033807/

PR:		209653
Submitted by:	cartwright@asu.edu (maintainer)
Fri, 1 Apr 2016
[ 13:29 mat ] Original commit   Revision:412344
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile

(Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 25 Dec 2015
[ 01:31 junovitch ] Original commit   Revision:404398
404398 biology/bcftools/Makefile
404398 biology/bcftools/distinfo
404398 biology/bcftools/files/patch-Makefile
404398 biology/bcftools/files/patch-plugins_fixploidy.mk
404398 biology/bcftools/files/patch-plugins_vcf2sex.mk
404398 biology/bcftools/files/patch-prob1.c
404398 biology/bcftools/files/patch-test_test.pl
404398 biology/bcftools/files/pkg-message.in
404398 biology/bcftools/pkg-plist
404398 biology/htslib/Makefile

(Only the first 10 of 27 ports in this commit are shown above. View all ports for this commit)
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
Fri, 5 Jun 2015
[ 21:01 pi ] Original commit   Revision:388638
388638 biology/Makefile
388638 biology/bcftools
388638 biology/bcftools/Makefile
388638 biology/bcftools/distinfo
388638 biology/bcftools/files
388638 biology/bcftools/files/patch-Makefile
388638 biology/bcftools/files/patch-plugins_fixploidy.mk
388638 biology/bcftools/files/patch-plugins_vcf2sex.mk
388638 biology/bcftools/files/patch-prob1.c
388638 biology/bcftools/files/pkg-message.in

(Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
New port: biology/bcftools

BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF. All
commands work transparently with both VCFs and BCFs, both
uncompressed and BGZF-compressed.

WWW: http://www.htslib.org/

PR:		199747
Submitted by:	cartwright@asu.edu

Number of commits found XX: 13

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