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NOTE: There is a known problem on production with searching pkg-plist - it returns no results. This problem is not present on stage.freshports.org
non port: biology/bcftools/Makefile
SVNWeb

Number of commits found: 23

Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 20 Jul 2022
[ 14:20 Tobias C. Berner (tcberner) search for other commits by this committer ]    commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  37526bb  (Only the first 10 of 82 ports in this commit are shown above. View all ports for this commit)
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sat, 26 Feb 2022
[ 15:04 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:734d2c4df0a562d5be9ef181424ebec5ab7b2222  commit hash:734d2c4df0a562d5be9ef181424ebec5ab7b2222  commit hash:734d2c4df0a562d5be9ef181424ebec5ab7b2222  734d2c4 
biology/bcftools: Update to 1.15

Several small enhancements
Changes: https://github.com/samtools/bcftools/releases

Reported by:    portscout
Wed, 12 Jan 2022
[ 19:41 Tobias C. Berner (tcberner) search for other commits by this committer ]    commit hash:654acd81409d31495f8b1b11db61e1afbf640981  commit hash:654acd81409d31495f8b1b11db61e1afbf640981  commit hash:654acd81409d31495f8b1b11db61e1afbf640981  654acd8  (Only the first 10 of 66 ports in this commit are shown above. View all ports for this commit)
math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201
Sat, 18 Dec 2021
[ 17:56 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:9302b3e21ff4b44c0003d01b51c648a40ac30ac2  commit hash:9302b3e21ff4b44c0003d01b51c648a40ac30ac2  commit hash:9302b3e21ff4b44c0003d01b51c648a40ac30ac2  9302b3e 
biology/bcftools: Update to 1.14

A few minor enhancements and bug fixes

Changes: https://github.com/samtools/bcftools/tags
Mon, 12 Jul 2021
[ 13:30 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:94c639f5ff163d57758c0631c7280c9f0fd2e86e  commit hash:94c639f5ff163d57758c0631c7280c9f0fd2e86e  commit hash:94c639f5ff163d57758c0631c7280c9f0fd2e86e  94c639f 
biology/bcftools: Update to 1.13

Numerous enhancements and bug fixes

Changes:        https://github.com/samtools/bcftools/releases/tag/1.13
Reported by:    portscout
Wed, 16 Jun 2021
[ 19:31 Tobias C. Berner (tcberner) search for other commits by this committer ]    commit hash:63e653adaa7493aa98f17f9fbc834c0aed7e096e  commit hash:63e653adaa7493aa98f17f9fbc834c0aed7e096e  commit hash:63e653adaa7493aa98f17f9fbc834c0aed7e096e  63e653a  (Only the first 10 of 66 ports in this commit are shown above. View all ports for this commit)
math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Sat, 20 Mar 2021
[ 17:14 jwb search for other commits by this committer ] Original commit   Revision:568874 (Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12

Numerous enhancements, performance improvements, and bug fixes since 1.11

Build-tested all other htslib dependents, no revbumps should be needed

Reported by:    portscout
Thu, 5 Nov 2020
[ 20:34 jwb search for other commits by this committer ] Original commit   Revision:554157
biology/bcftools: Upgrade to 1.11

Numerous new features, bug fixes and performance enhancements
https://github.com/samtools/bcftools/releases/tag/1.11

Reported by:    portscout
Mon, 3 Aug 2020
[ 18:16 jwb search for other commits by this committer ] Original commit   Revision:544096
biology/bcftools: Upgrade to 1.10.2

Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/bcftools/tags

Take maintainership per ports/248089.

PR:             ports/248089
[ 17:40 jwb search for other commits by this committer ] Original commit   Revision:544090 (Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
biology/htslib: Upgrade to 1.10.2

Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags

Bump PORTREVISION on dependents that don't require additional patching

PR:             248089
Fri, 25 Oct 2019
[ 23:41 tcberner search for other commits by this committer ] Original commit   Revision:515671 (Only the first 10 of 64 ports in this commit are shown above. View all ports for this commit)
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
Thu, 2 Aug 2018
[ 19:30 fernape search for other commits by this committer ] Original commit   Revision:476247
biology/bcftools: update to 1.9

While here:

* Update LICENSE handling
* Move all commands to bin/

PR:	230169
Submitted by:	ndowens.fbsd@yandex.com
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16543
Sat, 23 Jun 2018
[ 08:27 tcberner search for other commits by this committer ] Original commit   Revision:473116 (Only the first 10 of 47 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 2.5

PR:		229067
Mon, 4 Dec 2017
[ 15:27 mat search for other commits by this committer ] Original commit   Revision:455518
Add a USES=python:env, that will not add a dependency on Python.

It has the same effect than setting PYTHON_NO_DEPENDS, but in a more
compact way.

Sponsored by:	Absolight
Wed, 25 Oct 2017
[ 10:19 pizzamig search for other commits by this committer ] Original commit   Revision:452840 (Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
biology/htslib biology/bcftools biology/samtools: Update to 1.6

PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
Mon, 3 Jul 2017
[ 20:38 tcberner search for other commits by this committer ] Original commit   Revision:444988 (Only the first 10 of 42 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408
Tue, 2 May 2017
[ 05:26 tcberner search for other commits by this committer ] Original commit   Revision:439928 (Only the first 10 of 46 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522
Thu, 26 May 2016
[ 20:28 pi search for other commits by this committer ] Original commit   Revision:415914
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1

Changes:
  https://sourceforge.net/p/samtools/mailman/message/35033807/

PR:		209653
Submitted by:	cartwright@asu.edu (maintainer)
Fri, 1 Apr 2016
[ 13:29 mat search for other commits by this committer ] Original commit   Revision:412344 (Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 25 Dec 2015
[ 01:31 junovitch search for other commits by this committer ] Original commit   Revision:404398 (Only the first 10 of 27 ports in this commit are shown above. View all ports for this commit)
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
Fri, 5 Jun 2015
[ 21:01 pi search for other commits by this committer ] Original commit   Revision:388638 (Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
New port: biology/bcftools

BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF. All
commands work transparently with both VCFs and BCFs, both
uncompressed and BGZF-compressed.

WWW: http://www.htslib.org/

PR:		199747
Submitted by:	cartwright@asu.edu

Number of commits found: 23