| non port: biology/bcftools/distinfo |
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SVNWeb
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Number of commits found XX: 7 | |
Thu, 5 Nov 2020
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[ 20:34 jwb ]  
554157 biology/bcftools/Makefile
554157 biology/bcftools/distinfo
554157 biology/bcftools/files/patch-Makefile
554157 biology/bcftools/files/patch-misc_run-roh.pl
554157 biology/bcftools/files/patch-test_test.pl
554157 biology/bcftools/pkg-plist
biology/bcftools: Upgrade to 1.11
Numerous new features, bug fixes and performance enhancements
https://github.com/samtools/bcftools/releases/tag/1.11
Reported by: portscout
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Mon, 3 Aug 2020
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[ 18:16 jwb ]
544096 biology/bcftools/Makefile
544096 biology/bcftools/distinfo
544096 biology/bcftools/files/patch-Makefile
544096 biology/bcftools/files/patch-prob1.c
544096 biology/bcftools/files/patch-test_test.pl
544096 biology/bcftools/pkg-plist
biology/bcftools: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/bcftools/tags
Take maintainership per ports/248089.
PR: ports/248089
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Thu, 2 Aug 2018
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[ 19:30 fernape ]
476247 biology/bcftools/Makefile
476247 biology/bcftools/distinfo
476247 biology/bcftools/files/patch-Makefile
476247 biology/bcftools/files/patch-configure.ac
476247 biology/bcftools/pkg-plist
biology/bcftools: update to 1.9
While here:
* Update LICENSE handling
* Move all commands to bin/
PR: 230169
Submitted by: ndowens.fbsd@yandex.com
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D16543
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Wed, 25 Oct 2017
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[ 10:19 pizzamig ]
452840 biology/bcftools/Makefile
452840 biology/bcftools/distinfo
452840 biology/bcftools/files/patch-Makefile
452840 biology/bcftools/files/patch-configure.ac
452840 biology/bcftools/files/patch-misc_run-roh.pl
452840 biology/bcftools/files/patch-prob1.c
452840 biology/bcftools/files/patch-test_test.pl
452840 biology/bcftools/files/pkg-message.in
452840 biology/bcftools/pkg-plist
452840 biology/htslib/Makefile
(Only the first 10 of 25 ports in this commit are shown above.  )
biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR: 223094
Submitted by: mzaki@niid.go.jp
Approved by: cartwright@asu.edu (maintainer)
Approved by: olivier (mentor)
Differential Revision: https://reviews.freebsd.org/D12768
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Thu, 26 May 2016
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[ 20:28 pi ]
415914 biology/bcftools/Makefile
415914 biology/bcftools/distinfo
415914 biology/bcftools/pkg-plist
415914 biology/htslib/Makefile
415914 biology/htslib/distinfo
415914 biology/samtools/Makefile
415914 biology/samtools/distinfo
415914 biology/samtools/files/patch-Makefile
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Changes:
https://sourceforge.net/p/samtools/mailman/message/35033807/
PR: 209653
Submitted by: cartwright@asu.edu (maintainer)
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Fri, 25 Dec 2015
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[ 01:31 junovitch ]
404398 biology/bcftools/Makefile
404398 biology/bcftools/distinfo
404398 biology/bcftools/files/patch-Makefile
404398 biology/bcftools/files/patch-plugins_fixploidy.mk
404398 biology/bcftools/files/patch-plugins_vcf2sex.mk
404398 biology/bcftools/files/patch-prob1.c
404398 biology/bcftools/files/patch-test_test.pl
404398 biology/bcftools/files/pkg-message.in
404398 biology/bcftools/pkg-plist
404398 biology/htslib/Makefile
(Only the first 10 of 27 ports in this commit are shown above. )
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's
PR: 205524
PR: 205525
PR: 205526
Submitted by: cartwright@asu.edu (maintainer)
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Fri, 5 Jun 2015
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[ 21:01 pi ]
388638 biology/Makefile
388638 biology/bcftools
388638 biology/bcftools/Makefile
388638 biology/bcftools/distinfo
388638 biology/bcftools/files
388638 biology/bcftools/files/patch-Makefile
388638 biology/bcftools/files/patch-plugins_fixploidy.mk
388638 biology/bcftools/files/patch-plugins_vcf2sex.mk
388638 biology/bcftools/files/patch-prob1.c
388638 biology/bcftools/files/pkg-message.in
(Only the first 10 of 12 ports in this commit are shown above. )
New port: biology/bcftools
BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF. All
commands work transparently with both VCFs and BCFs, both
uncompressed and BGZF-compressed.
WWW: http://www.htslib.org/
PR: 199747
Submitted by: cartwright@asu.edu
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Number of commits found XX: 7 |
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| Latest Vulnerabilities |
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15 vulnerabilities affecting 99 ports have been reported in the past 14 days
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* - modified, not new All vulnerabilities
Last updated:
2021-03-04 19:50:49
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