| non port: biology/bcftools/distinfo |
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SVNWeb
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Number of commits found: 12 |
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Thu, 5 Jan 2023
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[ 23:19 Jason W. Bacon (jwb)  ]    adfc943
biology/bcftools: Update to 1.16
New plugin variant-distance to annotate records with distance to the
nearest variant
Numerous minor enhancements and bug fixes
Changes: https://github.com/samtools/bcftools/releases
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Sat, 26 Feb 2022
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[ 15:04 Jason W. Bacon (jwb) ] 734d2c4
biology/bcftools: Update to 1.15
Several small enhancements
Changes: https://github.com/samtools/bcftools/releases
Reported by: portscout
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Sat, 18 Dec 2021
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[ 17:56 Jason W. Bacon (jwb) ] 9302b3e
biology/bcftools: Update to 1.14
A few minor enhancements and bug fixes
Changes: https://github.com/samtools/bcftools/tags
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Mon, 12 Jul 2021
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[ 13:30 Jason W. Bacon (jwb) ] 94c639f
biology/bcftools: Update to 1.13
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/bcftools/releases/tag/1.13
Reported by: portscout
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Sat, 20 Mar 2021
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[ 17:14 jwb ]   (Only the first 10 of 17 ports in this commit are shown above.  )
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12
Numerous enhancements, performance improvements, and bug fixes since 1.11
Build-tested all other htslib dependents, no revbumps should be needed
Reported by: portscout
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Thu, 5 Nov 2020
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[ 20:34 jwb ]
biology/bcftools: Upgrade to 1.11
Numerous new features, bug fixes and performance enhancements
https://github.com/samtools/bcftools/releases/tag/1.11
Reported by: portscout
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Mon, 3 Aug 2020
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[ 18:16 jwb ]
biology/bcftools: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/bcftools/tags
Take maintainership per ports/248089.
PR: ports/248089
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Thu, 2 Aug 2018
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[ 19:30 fernape ]
biology/bcftools: update to 1.9
While here:
* Update LICENSE handling
* Move all commands to bin/
PR: 230169
Submitted by: ndowens.fbsd@yandex.com
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D16543
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Wed, 25 Oct 2017
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[ 10:19 pizzamig ] (Only the first 10 of 25 ports in this commit are shown above. )
biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR: 223094
Submitted by: mzaki@niid.go.jp
Approved by: cartwright@asu.edu (maintainer)
Approved by: olivier (mentor)
Differential Revision: https://reviews.freebsd.org/D12768
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Thu, 26 May 2016
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[ 20:28 pi ]
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Changes:
https://sourceforge.net/p/samtools/mailman/message/35033807/
PR: 209653
Submitted by: cartwright@asu.edu (maintainer)
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Fri, 25 Dec 2015
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[ 01:31 junovitch ] (Only the first 10 of 27 ports in this commit are shown above. )
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's
PR: 205524
PR: 205525
PR: 205526
Submitted by: cartwright@asu.edu (maintainer)
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Fri, 5 Jun 2015
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[ 21:01 pi ] (Only the first 10 of 12 ports in this commit are shown above. )
New port: biology/bcftools
BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF. All
commands work transparently with both VCFs and BCFs, both
uncompressed and BGZF-compressed.
WWW: http://www.htslib.org/
PR: 199747
Submitted by: cartwright@asu.edu
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Number of commits found: 12 |
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