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Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: biology/bcftools/files/

Number of commits found XX: 2

Fri, 25 Dec 2015
[ 01:31 junovitch ] Original commit   Revision:404398
404398 biology/bcftools/Makefile
404398 biology/bcftools/distinfo
404398 biology/bcftools/files/patch-Makefile
404398 biology/bcftools/files/
404398 biology/bcftools/files/
404398 biology/bcftools/files/patch-prob1.c
404398 biology/bcftools/files/
404398 biology/bcftools/files/
404398 biology/bcftools/pkg-plist
404398 biology/htslib/Makefile

(Only the first 10 of 27 ports in this commit are shown above. View all ports for this commit)
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by: (maintainer)
Fri, 5 Jun 2015
[ 21:01 pi ] Original commit   Revision:388638
388638 biology/Makefile
388638 biology/bcftools
388638 biology/bcftools/Makefile
388638 biology/bcftools/distinfo
388638 biology/bcftools/files
388638 biology/bcftools/files/patch-Makefile
388638 biology/bcftools/files/
388638 biology/bcftools/files/
388638 biology/bcftools/files/patch-prob1.c
388638 biology/bcftools/files/

(Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
New port: biology/bcftools

BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF. All
commands work transparently with both VCFs and BCFs, both
uncompressed and BGZF-compressed.


PR:		199747
Submitted by:

Number of commits found XX: 2

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