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Two two features were added on 2020-05-30:
  1. Repology links - each port now has a link to See issue 148 for details.
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non port: biology/bedtools/distinfo

Number of commits found XX: 5

Thu, 19 Dec 2019
[ 01:04 jwb ] Original commit   Revision:520414
520414 biology/bedtools/Makefile
520414 biology/bedtools/distinfo
biology/bedtools: Upgrade to 2.29.2

Fixed a bug that mistakenly removed a BAM/CRAM header line

Reported by:    portscout
Wed, 11 Dec 2019
[ 15:13 jwb ] Original commit   Revision:519810
519810 biology/bedtools/Makefile
519810 biology/bedtools/distinfo
biology/bedtools: Upgrade to 2.29.1

Several important bug fixes.

Reported by:    portscout
Fri, 13 Sep 2019
[ 13:21 jwb ] Original commit   Revision:511958
511958 biology/bedtools/Makefile
511958 biology/bedtools/distinfo
511958 biology/bedtools/files/patch-Makefile
511958 biology/bedtools/files/patch-src_utils_Contexts_ContextBase.h
511958 biology/bedtools/files/patch-src_utils_htslib_Makefile
biology/bedtools: Upgrade to 2.29.0

Add test target to run test scripts in dist

Reported by:    portscout
Thu, 19 Apr 2018
[ 16:44 jwb ] Original commit   Revision:467783
467783 biology/bedtools/Makefile
467783 biology/bedtools/distinfo
467783 biology/bedtools/files/patch-Makefile
467783 biology/bedtools/files/patch-src_utils_FileRecordTools_Records_StrandQueue.h
467783 biology/bedtools/pkg-descr
467783 biology/bedtools/pkg-plist
biology/bedtools: Upgrade to 2.27.1

PR:             227272
Submitted by:   jwb
Approved by:    jrm (mentor)
Differential Revision:
Tue, 19 Jan 2016
[ 08:56 wen ] Original commit   Revision:406676
406676 biology/Makefile
406676 biology/bedtools
406676 biology/bedtools/Makefile
406676 biology/bedtools/distinfo
406676 biology/bedtools/files
406676 biology/bedtools/files/patch-Makefile
406676 biology/bedtools/pkg-descr
406676 biology/bedtools/pkg-plist
The bedtools utilities are a suite of tools for performing a wide range of
genomics analysis tasks.  The most widely-used of these tools enable genome
arithmetic, i.e., set theory on the genome.  For example, with bedtools one
can intersect, merge, count, complement, and shuffle genomic intervals from
multiple files in common genomic formats such as BAM, BED, GFF/GTF, and VCF.

Although each individual utility is designed to do a relatively simple task,
e.g., intersect two interval files, more sophisticated analyses can be
conducted by stringing together multiple bedtools operations on the command
line or in shell scripts.


PR:		204536
Submitted by:

Number of commits found XX: 5

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