16:42 Jason W. Bacon (jwb) 

biology/bedtools: Update to 2.31.1

Code updates for modern compilers

Changes: https://github.com/arq5x/bedtools2/releases

    1e46f94

01:03 Jason W. Bacon (jwb) 

biology/bedtools: Update to 2.31.0

New summary tool
Numerous minor fixes and enhancements
Changes: https://github.com/arq5x/bedtools2/releases

Reported by:    portscout

    44171f2

18:25 jwb 

biology/bedtools: Upgrade to 2.30.0

Several bug fixes and performance enhancements

Reported by:    portscout

 

01:04 jwb 

biology/bedtools: Upgrade to 2.29.2

Fixed a bug that mistakenly removed a BAM/CRAM header line

Reported by:    portscout

 

15:13 jwb 

biology/bedtools: Upgrade to 2.29.1

Several important bug fixes.

Reported by:    portscout

 

13:21 jwb 

biology/bedtools: Upgrade to 2.29.0

Add test target to run test scripts in dist

Reported by:    portscout

 

16:44 jwb 

biology/bedtools: Upgrade to 2.27.1

PR:             227272
Submitted by:   jwb
Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15137

 

08:56 wen 

The bedtools utilities are a suite of tools for performing a wide range of
genomics analysis tasks.  The most widely-used of these tools enable genome
arithmetic, i.e., set theory on the genome.  For example, with bedtools one
can intersect, merge, count, complement, and shuffle genomic intervals from
multiple files in common genomic formats such as BAM, BED, GFF/GTF, and VCF.

Although each individual utility is designed to do a relatively simple task,
e.g., intersect two interval files, more sophisticated analyses can be
conducted by stringing together multiple bedtools operations on the command
line or in shell scripts.

WWW: http://bedtools.readthedocs.org/

PR:		204536
Submitted by:	scottcheloha@gmail.com