notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

Two new features

Two two features were added on 2020-05-30:
  1. Repology links - each port now has a link to repology.org. See issue 148 for details.
  2. Ports I maintain report - port maintainers can now subscribe to a daily report of commits to the ports they maintain. See Watch ports I maintain at Report Subscriptions. Details at issue 138
non port: biology/bedtools/pkg-plist
SVNWeb

Number of commits found XX: 2

Thu, 19 Apr 2018
[ 16:44 jwb ] Original commit   Revision:467783
467783 biology/bedtools/Makefile
467783 biology/bedtools/distinfo
467783 biology/bedtools/files/patch-Makefile
467783 biology/bedtools/files/patch-src_utils_FileRecordTools_Records_StrandQueue.h
467783 biology/bedtools/pkg-descr
467783 biology/bedtools/pkg-plist
biology/bedtools: Upgrade to 2.27.1

PR:             227272
Submitted by:   jwb
Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15137
Tue, 19 Jan 2016
[ 08:56 wen ] Original commit   Revision:406676
406676 biology/Makefile
406676 biology/bedtools
406676 biology/bedtools/Makefile
406676 biology/bedtools/distinfo
406676 biology/bedtools/files
406676 biology/bedtools/files/patch-Makefile
406676 biology/bedtools/pkg-descr
406676 biology/bedtools/pkg-plist
The bedtools utilities are a suite of tools for performing a wide range of
genomics analysis tasks.  The most widely-used of these tools enable genome
arithmetic, i.e., set theory on the genome.  For example, with bedtools one
can intersect, merge, count, complement, and shuffle genomic intervals from
multiple files in common genomic formats such as BAM, BED, GFF/GTF, and VCF.

Although each individual utility is designed to do a relatively simple task,
e.g., intersect two interval files, more sophisticated analyses can be
conducted by stringing together multiple bedtools operations on the command
line or in shell scripts.

WWW: http://bedtools.readthedocs.org/

PR:		204536
Submitted by:	scottcheloha@gmail.com

Number of commits found XX: 2

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
giteaMay 31
powerdns-recursor*May 29
gitlab-ceMay 28
rubygem-kaminari-coreMay 28
sane-backendsMay 28
sympaMay 26
chromiumMay 24
piwigoMay 23
drupal7May 22
sympaMay 22
tomcat-develMay 22
tomcat7May 22
tomcat85May 22
tomcat9May 22
unboundMay 22

16 vulnerabilities affecting 89 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2020-05-31 11:54:41


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 39463
Broken 83
Deprecated 623
Ignore 328
Forbidden 5
Restricted 147
No CDROM 76
Vulnerable 23
Expired 15
Set to expire 573
Interactive 0
new 24 hours 5
new 48 hours7
new 7 days32
new fortnight73
new month189

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2020 Dan Langille. All rights reserved.