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The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

Port details
blast WU BLAST, a software package for sequence similarity searches
2.0_20060322 biology Deleted on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.0Version of this port present on the latest quarterly branch.
Broken BROKEN: Mark as broken: no checksum provided
Deprecated DEPRECATED: Rights to BLAST 2.0 (WU-BLAST) have been acquired by Advanced Biocomputing, LLC
Expired This port expired on: 2014-09-04
Ignore IGNORE: is marked as broken: Mark as broken: no checksum provided
Restricted RESTRICTED: License does not allow redistribution of binaries. You should first register for the software, which is free for academic use.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
search for ports maintained by this maintainer
Port Added: 2004-11-11 21:47:25
Last Update: 2014-09-01 12:37:14
SVN Revision: 366862
License: not specified in port
Description:
SVNWeb : Homepage

There is no configure plist information for this port.

Dependency lines:
  • wu-blast>0:biology/blast
No installation instructions: this port has been deleted.
The package name of this deleted port was: wu-blast
PKGNAME: wu-blast
Flavors: there is no flavor information for this port.
ONLY_FOR_ARCHS: i386 amd64
distinfo:
There is no distinfo for this port.

There are no ports dependent upon this port

Configuration Options
Master Sites:
  1. http://distcache.FreeBSD.org/ports-distfiles/
Port Moves
  • port deleted on 2014-09-01
    REASON: Not staged

Number of commits found: 18

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
01 Sep 2014 11:37:14
Original commit files touched by this commit  2.0_20060322
Revision:366862
bapt search for other commits by this committer
Remove non staged ports without pending PR from b*
22 Jun 2014 22:06:01
Original commit files touched by this commit  2.0_20060322
Revision:358837
bapt search for other commits by this committer
Mark as broken: no distinfo provided

With hat:	portmgr
19 Jun 2014 11:55:50
Original commit files touched by this commit  2.0_20060322
Revision:358383
marino search for other commits by this committer
biology/blast: Deprecate for removal after 4 September 2014

This unstaged port will be removed for legal reasons.

PR:		190626
Submitted by:	Muhammad Rahman
Approved by:	portmgr (implicit)
26 May 2014 02:33:39
Original commit files touched by this commit  2.0_20060322
Revision:355274
eadler search for other commits by this committer
Multiple ports: reset maintainers
	Maintainers for these ports have been notified on 5 separate occasions
	over the course of several months about pending actions required.

	We really appreciate the time and effort you put in to maintain
	these ports.

	If you are still interested in helping to maintain these ports just
	reply to me or file a PR and I will happily assign the port to you
	again.

Approved by:	portmgr (implicit)
03 Jan 2014 15:46:52
Original commit files touched by this commit  2.0_20060322
Revision:338550
adamw search for other commits by this committer
Convert biology to MDOCS and MEXAMPLES
20 Sep 2013 15:55:44
Original commit files touched by this commit  2.0_20060322
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
01 Oct 2012 14:55:55
Original commit files touched by this commit  2.0_20060322
Revision:305131
wen search for other commits by this committer
- Take maintainership
01 Oct 2012 14:45:17
Original commit files touched by this commit  2.0_20060322
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54
Original commit files touched by this commit  2.0_20060322

miwi search for other commits by this committer
- Get Rid MD5 support
09 Jan 2010 23:51:26
Original commit files touched by this commit  2.0_20060322

pgollucci search for other commits by this committer
- SUB_FILES += pkg-message

PR:             ports/142407
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
05 Jan 2009 17:27:29
Original commit files touched by this commit  2.0_20060322

pav search for other commits by this committer
- Remove conditional checks relevant only on FreeBSD 5.x and older
04 Oct 2007 00:15:01
Original commit files touched by this commit  2.0_20060322

edwin search for other commits by this committer
Remove always-false/true conditions based on OSVERSION 500000
02 May 2007 07:14:50
Original commit files touched by this commit  2.0_20060322

edwin search for other commits by this committer
[patch] cleanup non-supported FreeBSD versions

PR:             ports/111725
Submitted by:   Edwin Groothuis <edwin@mavetju.org>
Approved by:    maintainer timeout
11 Jun 2006 09:13:43
Original commit files touched by this commit  2.0_20060322

pav search for other commits by this committer
- Update PORTREVISION to match latest release (see main web site)
- Update the port to add other architectures (amd64)

PR:             ports/98764
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
14 Jan 2006 19:36:19
Original commit files touched by this commit  2.0_20060101

pav search for other commits by this committer
- Update to 2.0.20060101

PR:             ports/91715
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
18 Mar 2005 13:01:08
Original commit files touched by this commit  2.0_20050316

danfe search for other commits by this committer
From the PR:

  I've added PORTREVISION to the port and set it to the release
  date as in the lang/gcc* ports.  Since the distinfo file is not
  used, this would help users know when they have to update their
  ports.

  Although newer release might be made, the idea is to bump
  PORTREVISION for important feature releases on when significant
  bugs are fixed.

  Other minor (cosmetic) changes also applied.

PR:             ports/78963
Sumbitted by:   maintainer
18 Nov 2004 07:58:42
Original commit files touched by this commit  2.0

pav search for other commits by this committer
- Distfiles change every few days, so drop md5 checking on them

Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
11 Nov 2004 21:35:04
Original commit files touched by this commit  2.0

pav search for other commits by this committer
Add blast, a powerful software package for gene and protein identification,
using sensitive, selective and rapid similarity searches of protein and
nucleotide sequence databases.

PR:             ports/69636
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 18

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