SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It
contains about all currently published protein sequences and is continuously
updated.
The computational effort for keeping SIMAP up-to-date is constantly increasing.
Please help to update SIMAP by calculating protein similarities on your
computer.
WWW: http://boincsimap.org/boincsimap/
===> The following configuration options are available for boinc-simap-5.10.5.09_7:
SSE=off: Use SSE optimized routines
===> Use 'make config' to modify these settings
Remove expired ports:
2015-01-01 biology/boinc-simap: Project shutting down, see
http://boincsimap.org/boincsimap/forum_thread.php?id=88
2015-01-01 security/openssh-portable-base: Overwrite-base option/port/pkg will
be removed. There is no real need for foot-shooting.
2015-01-01 devel/cedet: Fails to build, use Emacs' builtin cedet package instead
2015-01-01 devel/ecb: does not work with newer Emacs versions, use the elpa
package instead
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit)
Several fixes:
- install files as the BOINC user/group, this ensures that work units can
be downloaded and sent
- try to remove ~boinc/projects if empty
- do not specify -o and -g parameters to ${INSTALL}, this ensures the
package can be built as user
- only extract the hmmer binary from the hmmer distribution file, this
ensures correct permissions when modifying app_info.xml as user
- Bump PORTREVISION
Reviewed by: bapt
Use the new project URL to let the application attach coorectly to the
project, and some cleanups:
- use optionsNG
- update commands in pkg-install.in
- improve %%AMD64%% comment handling
- convert Makefile header
- remove unused variable SIMAP_URL
Bump PORTREVISION
PR: ports/174748
Submitted by: myself
Approved by: maintainer (pav@)
Bump portrevision due to upgrade of devel/gettext.
The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).
PR: ports/124340
Submitted by: edwin@
Approved by: portmgr (pav)
SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It
contains about all currently published protein sequences and is continuously
updated.
The computational effort for keeping SIMAP up-to-date is constantly increasing.
Please help to update SIMAP by calculating protein similarities on your
computer.
WWW: http://boinc.bio.wzw.tum.de/boincsimap/
