| non port: biology/bowtie/Makefile |
|
SVNWeb
|
Number of commits found: 18 |
|
Wed, 15 Dec 2021
|
[ 12:55 Piotr Kubaj (pkubaj)  ]  1cbb605
biology/bowtie: enable on riscv64
|
|
Tue, 14 Dec 2021
|
[ 01:43 Jason W. Bacon (jwb) ] eb67c2b
biology/bowtie: Update to 1.3.1
Also adds support for aarch64 and powerpc64*
Changes: https://github.com/BenLangmead/bowtie/tags
PR: 260389
Reported by: pkubaj
|
|
Wed, 7 Apr 2021
|
[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above.  )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
|
|
Tue, 6 Apr 2021
|
[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
|
|
Fri, 26 Jul 2019
|
[ 20:46 gerald ]   (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
|
|
Wed, 12 Dec 2018
|
[ 01:35 gerald ] (Only the first 10 of 3168 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
|
|
Sat, 3 Nov 2018
|
[ 23:24 jwb ]
biology/bowtie: Patch for gcc8 and clean up
PR: 232929
Reported by: gerald
Approved by: jrm (mentor, implicit)
|
[ 23:16 jwb ]
biology/bowtie: Revert previous commit with missing log message
|
[ 21:10 jwb ]
biology/bowtie: Patch
|
|
Mon, 10 Sep 2018
|
[ 13:14 mat ] (Only the first 10 of 995 ports in this commit are shown above. )
Add DOCS options to ports that should have one.
Also various fixes related to said option.
PR: 230864
Submitted by: mat
exp-runs by: antoine
|
|
Sun, 29 Jul 2018
|
[ 22:18 gerald ] (Only the first 10 of 1480 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
|
|
Sat, 10 Mar 2018
|
[ 17:46 gerald ] (Only the first 10 of 1104 ports in this commit are shown above. )
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
|
|
Wed, 31 Jan 2018
|
[ 01:07 jwb ] (Only the first 10 of 56 ports in this commit are shown above. )
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D14128
|
|
Sun, 10 Sep 2017
|
[ 20:55 gerald ] (Only the first 10 of 1201 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
c++14-lang, c++0x, c11, or gcc-c++11-lib.
PR: 219275
|
|
Sat, 22 Apr 2017
|
[ 09:25 miwi ]
- Fix shebangs
|
|
Sat, 1 Apr 2017
|
[ 15:23 gerald ] (Only the first 10 of 1118 ports in this commit are shown above. )
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using using Mk/bsd.octave.mk which in turn has USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
c++11-lang, c++0x, c11, or gcc-c++11-lib.
PR: 216707
|
|
Sun, 20 Nov 2016
|
[ 09:38 gerald ] (Only the first 10 of 364 ports in this commit are shown above. )
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).
In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
|
|
Sat, 5 Mar 2016
|
[ 13:21 rakuco ]
New port: biology/bowtie.
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.
WWW: http://bowtie-bio.sourceforge.net/index.shtml
PR: 206939
Submitted by: Jason Bacon <bacon4000@gmail.com>
|
Number of commits found: 18 |
As an Amazon Associate I earn from qualifying purchases.