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Current status

The server has been repaired, with a new power supply, for $23. I am waiting for lower COVID rates before visiting the datacenter to return it.
non port: biology/bwa/Makefile
SVNWeb

Number of commits found: 15

Wed, 7 Apr 2021
[ 08:09 mat (Mathieu Arnold) ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 mat (Mathieu Arnold) ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148 (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Tue, 2 Mar 2021
[ 15:01 pkubaj ] Original commit   Revision:566960
biology/bwa: fix build on powerpc64le

Use GCC's SSE->Altivec translation:
In file included from ksw.c:29:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:50:12: error: invalid conversion
between vector type '__m64' (vector of 1 'long long' value) and integer type
'int' of different size
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
Sat, 2 Jan 2021
[ 01:46 linimon ] Original commit   Revision:559904(Only the first 10 of 34 ports in this commit are shown above. View all ports for this commit)
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.

While here, pet portlint (Makevar order).

Approved by:	portmgr (tier-2 blanket)
Fri, 28 Aug 2020
[ 11:17 tcberner ] Original commit   Revision:546721
biology/bwa: fix build on recent current

Obtained
from:	https://github.com/lh3/bwa/commit/2a1ae7b6f34a96ea25be007ac9d91e57e9d32284
Wed, 31 Jan 2018
[ 01:07 jwb ] Original commit   Revision:460452(Only the first 10 of 56 ports in this commit are shown above. View all ports for this commit)
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
Thu, 30 Nov 2017
[ 06:13 linimon ] Original commit   Revision:455167(Only the first 10 of 189 ports in this commit are shown above. View all ports for this commit)
For ports that are marked BROKEN on armv6, and also fail to build on
armv7, mark them so.

This is part two of a multipart commit to bring armv7 ports to parity
with armv6.

Approved by:	portmgr (tier-2 blanket)
Obtained from:	lonesome.com -exp run
Tue, 28 Nov 2017
[ 15:21 jwb ] Original commit   Revision:455045
biology/bwa: Upgrade to 0.7.17

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D13283
Fri, 26 May 2017
[ 20:02 linimon ] Original commit   Revision:441814(Only the first 10 of 32 ports in this commit are shown above. View all ports for this commit)
Mark some ports failing on armv6, for errors classified as "???".

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Sat, 13 May 2017
[ 03:35 linimon ] Original commit   Revision:440746(Only the first 10 of 34 ports in this commit are shown above. View all ports for this commit)
Mark some ports failing on power64.  In cases where the error message
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Tue, 31 Jan 2017
[ 03:40 linimon ] Original commit   Revision:432897(Only the first 10 of 37 ports in this commit are shown above. View all ports for this commit)
Mark various ports broken on aarch64 and armv6.

Approved by:	portmgr (tier-2 blanket)
Fri, 11 Nov 2016
[ 09:07 linimon ] Original commit   Revision:425878
Attempt to fix build on non-x86 archs.

Approved by:	portmgr (tier-2 blanket)
Sun, 13 Dec 2015
[ 16:07 swills ] Original commit   Revision:403676(Only the first 10 of 26 ports in this commit are shown above. View all ports for this commit)
mark some of the ports that don't build on powerpc64 for me
Fri, 11 Dec 2015
[ 08:48 miwi ] Original commit   Revision:403506(Only the first 10 of 54 ports in this commit are shown above. View all ports for this commit)
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
Fri, 25 Sep 2015
[ 18:39 rm ] Original commit   Revision:397851
BWA is a program for aligning sequencing reads against a large reference
genome (e.g. human genome). It has two major components, one for read shorter
than 150bp and the other for longer reads.

WWW: http://sourceforge.net/projects/bio-bwa/

PR:		203158
Submitted by:	Jason Bacon <jwbacon@tds.net>

Number of commits found: 15