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Port details
clustal-omega Multiple alignment of nucleic acid and protein, replaces clustalw
1.2.4 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.2.4Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-05-21 22:15:40
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
License: GPLv2
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (38 items)
Collapse this list.
  1. /usr/local/share/licenses/clustal-omega-1.2.4/catalog.mk
  2. /usr/local/share/licenses/clustal-omega-1.2.4/LICENSE
  3. /usr/local/share/licenses/clustal-omega-1.2.4/GPLv2
  4. bin/clustalo
  5. include/clustalo/clustal-omega-config.h
  6. include/clustalo/clustal-omega.h
  7. include/clustalo/clustal/hhalign_wrapper.h
  8. include/clustalo/clustal/ktuple_pair.h
  9. include/clustalo/clustal/log.h
  10. include/clustalo/clustal/mbed.h
  11. include/clustalo/clustal/muscle_tree.h
  12. include/clustalo/clustal/pair_dist.h
  13. include/clustalo/clustal/progress.h
  14. include/clustalo/clustal/seq.h
  15. include/clustalo/clustal/symmatrix.h
  16. include/clustalo/clustal/tree.h
  17. include/clustalo/clustal/util.h
  18. include/clustalo/clustal/weights.h
  19. include/clustalo/hhalign/general.h
  20. include/clustalo/hhalign/hhfunc.h
  21. include/clustalo/squid/gki.h
  22. include/clustalo/squid/gsi64.h
  23. include/clustalo/squid/msa.h
  24. include/clustalo/squid/rk.h
  25. include/clustalo/squid/sqfuncs.h
  26. include/clustalo/squid/squid.h
  27. include/clustalo/squid/sre_random.h
  28. include/clustalo/squid/ssi.h
  29. include/clustalo/squid/stockholm.h
  30. include/clustalo/squid/stopwatch.h
  31. include/clustalo/squid/vectorops.h
  32. include/clustalo/squid/version.h
  33. lib/libclustalo.a
  34. libdata/pkgconfig/clustalo.pc
  35. share/doc/clustal-omega/README
  36. @owner
  37. @group
  38. @mode
Collapse this list.
Dependency lines:
  • clustal-omega>0:biology/clustal-omega
To install the port:
cd /usr/ports/biology/clustal-omega/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/clustal-omega
  • pkg install clustal-omega
PKGNAME: clustal-omega
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
clustal-omega
ABIlatestquarterly
FreeBSD:11:aarch641.2.41.2.4
FreeBSD:11:amd641.2.41.2.4
FreeBSD:11:armv6-1.2.4
FreeBSD:11:i3861.2.41.2.4
FreeBSD:11:mips--
FreeBSD:11:mips64-1.2.4
FreeBSD:12:aarch641.2.41.2.4
FreeBSD:12:amd641.2.41.2.4
FreeBSD:12:armv61.2.41.2.4
FreeBSD:12:armv71.2.41.2.4
FreeBSD:12:i3861.2.41.2.4
FreeBSD:12:mips--
FreeBSD:12:mips641.2.41.2.4
FreeBSD:12:powerpc64-1.2.4
FreeBSD:13:aarch641.2.41.2.4
FreeBSD:13:amd641.2.41.2.4
FreeBSD:13:armv61.2.41.2.4
FreeBSD:13:armv71.2.41.2.4
FreeBSD:13:i3861.2.41.2.4
FreeBSD:13:mips--
FreeBSD:13:mips641.2.41.2.4
FreeBSD:13:powerpc641.2.41.2.4
FreeBSD:14:aarch641.2.4-
FreeBSD:14:amd641.2.4-
FreeBSD:14:armv61.2.4-
FreeBSD:14:armv71.2.4-
FreeBSD:14:i3861.2.4-
FreeBSD:14:mips--
FreeBSD:14:mips641.2.4-
FreeBSD:14:powerpc641.2.4-
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Library dependencies:
  1. libargtable2.so : devel/argtable
This port is required by:
for Run
  1. biology/biostar-tools
Configuration Options:
Options name:
USES:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://www.clustal.org/omega/
Collapse this list.

Number of commits found: 3

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  1.2.4
 Mathieu Arnold (mat) search for other commits by this committer 
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.2.4
 Mathieu Arnold (mat) search for other commits by this committer 
Remove # $FreeBSD$ from Makefiles.
21 May 2018 22:15:26
Original commit files touched by this commit Revision:470582  1.2.4
 jwb search for other commits by this committer 
biology/clustal-omega: Multiple alignment of nucleic acid and protein, replaces
clustalw

Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D15516

Number of commits found: 3
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