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non port: biology/clustalw/Makefile

Number of commits found: 28

Saturday, 15 Jul 2023
23:18 Jason W. Bacon (jwb) search for other commits by this committer
biology/clustalw: Unbreak build for clang 16

Add -std=c++14

Reported by:    pkg-fallout
commit hash: 5cbb0205d56e47dab85d64d63c68c25c57171ee9 commit hash: 5cbb0205d56e47dab85d64d63c68c25c57171ee9 commit hash: 5cbb0205d56e47dab85d64d63c68c25c57171ee9 commit hash: 5cbb0205d56e47dab85d64d63c68c25c57171ee9 5cbb020
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Monday, 21 May 2018
01:13 jwb search for other commits by this committer
biology/clustalw: Fix license, take maintainership

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15503
Original commitRevision:470494 
Wednesday, 25 May 2016
15:43 mat search for other commits by this committer
Remove useless WRKSRC definitions.

While there, correct DEV_WARNINGS when they occur.

Sponsored by:	Absolight
Original commitRevision:415839 
Thursday, 14 May 2015
10:15 mat search for other commits by this committer
MASTER_SITES cleanup.

- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
  of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
  no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.

While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.

Also, replace some EXTRACT_SUFX occurences with USES=tar:*.

Checked by:	make fetch-urlall-list
With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:386312 
Monday, 26 May 2014
02:33 eadler search for other commits by this committer
Multiple ports: reset maintainers
	Maintainers for these ports have been notified on 5 separate occasions
	over the course of several months about pending actions required.

	We really appreciate the time and effort you put in to maintain
	these ports.

	If you are still interested in helping to maintain these ports just
	reply to me or file a PR and I will happily assign the port to you
	again.

Approved by:	portmgr (implicit)
Original commitRevision:355274 
Friday, 20 Dec 2013
15:29 wen search for other commits by this committer
- Fix build with clang/libc++.
- Support staging.

PR:		184974
Submitted by:	tijl@
Original commitRevision:337026 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Thursday, 11 Aug 2011
19:20 kwm search for other commits by this committer
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.

PR:             ports/159624
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Original commit
Tuesday, 21 Dec 2010
00:12 wen search for other commits by this committer
- Fix fetch

Reported by:    QAT@
Original commit
Monday, 22 Nov 2010
00:15 wen search for other commits by this committer
- Update to 2.1
Original commit
Sunday, 27 Dec 2009
03:05 wen search for other commits by this committer
- Fix fetch error
Original commit
Sunday, 29 Nov 2009
01:16 wen search for other commits by this committer
- Update to 2.0.12
- Update my mail address to FreeBSD
Original commit
Tuesday, 29 Apr 2008
12:58 miwi search for other commits by this committer
- Update to 2.0.6
- Pass maintainership to submitter

PR:             123193
Submitted by:   Wen heping <wenheping@gmail.com>
Original commit
Wednesday, 19 Mar 2008
14:01 jadawin search for other commits by this committer
- Update to 2.0.5
- Add RESTRICTED due to non-commercial use licence.

PR:             ports/121794
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Approved by:    thierry and tabthorpe (mentors)
Original commit
Tuesday, 26 Feb 2008
19:53 pav search for other commits by this committer
- Restore clustalw symlink, other ports rely on it

Reported by:    pointyhat
Pointy hat to:  pav
Original commit
Monday, 25 Feb 2008
22:05 pav search for other commits by this committer
- Update to 2.0.3
Original commit
Saturday, 15 Dec 2007
18:47 pav search for other commits by this committer
- Update to 2.0

PR:             ports/117713
Submitted by:   Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
Original commit
Sunday, 11 Mar 2007
03:20 linimon search for other commits by this committer
Reset dbader@eece.unm.edu due to maintainer-timeout.  While here, fix fetch.
Original commit
Saturday, 15 Feb 2003
18:43 naddy search for other commits by this committer
Update to 1.83.

PR:             48264
Submitted by:   David A. Bader <dbader@eece.unm.edu>
Original commit
Wednesday, 27 Mar 2002
14:01 wjv search for other commits by this committer
- Add a new patch
- Bump $PORTREVISION

PR:             36206
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
Original commit
Friday, 22 Mar 2002
08:23 wjv search for other commits by this committer
- Fix certain mistakes in FreeBSD patches
- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero <fernan@iib.unsam.edu.ar> on
  FreeBSD-bio list

PR:             36169
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
Original commit
Tuesday, 10 Jul 2001
14:54 sobomax search for other commits by this committer
${PREFIX}/share/${PORTNAME} --> ${DATADIR}    
Original commit
Tuesday, 3 Jul 2001
09:10 wjv search for other commits by this committer
Update to version 1.82    
Original commit
Tuesday, 3 Oct 2000
02:10 jeh search for other commits by this committer
- Support CC/CFLAGS/PREFIX properly   - gets() -> fgets()   - Add WWW: line into
pkg/DESCR    
Original commit
Monday, 10 Jul 2000
04:17 steve search for other commits by this committer
Adding clustalw version 1.81.   A CLUSTAL W Multiple Sequence Alignment Program.
   
Original commit

Number of commits found: 28