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Port details
clustalx Multiple alignment of nucleic acid and protein sequences with GUI
2.1 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Deprecated DEPRECATED: Qt4 has been EOL since december 2015
Expired This port expired on: 2019-03-15
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-05-21 20:56:34
Last Update: 2019-03-16 21:55:51
SVN Revision: 495967
License: LGPL3
ClustalX is the graphical version of Clustal, a general purpose multiple
sequence alignment program for DNA or proteins. It produces biologically
meaningful multiple sequence alignments of divergent sequences. It calculates
the best match for the selected sequences, and lines them up so that the
identities, similarities and differences can be seen. Evolutionary
relationships can be seen via viewing Cladograms or Phylograms.

WWW: http://www.clustal.org/
SVNWeb : Homepage
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (8 items)
  1. bin/clustalx
  2. /usr/local/share/clustalx/colprot.xml
  3. /usr/local/share/clustalx/coldna.xml
  4. /usr/local/share/clustalx/colprint.xml
  5. /usr/local/share/clustalx/clustalx.hlp
  6. /usr/local/share/licenses/clustalx-2.1/catalog.mk
  7. /usr/local/share/licenses/clustalx-2.1/LICENSE
  8. /usr/local/share/licenses/clustalx-2.1/LGPL3
  9. Collapse this list.
Dependency lines:
  • clustalx>0:biology/clustalx

No installation instructions: this port has been deleted.

The package name of this deleted port was:

PKGNAME: clustalx

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1526839706
SHA256 (clustalx-2.1.tar.gz) = e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05
SIZE (clustalx-2.1.tar.gz) = 341649


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. moc : devel/qt4-moc
  2. qmake : devel/qt4-qmake
Runtime dependencies:
  1. moc : devel/qt4-moc
Library dependencies:
  1. libQtCore.so : devel/qt4-corelib
  2. libQtGui.so : x11-toolkits/qt4-gui
  3. libQtXml.so : textproc/qt4-xml
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
qmake qt:4

Master Sites:
  1. ftp://ftp.ebi.ac.uk/pub/software/clustalw2/2.1/
  2. http://www.clustal.org/download/current/
Port Moves
  • port deleted on 2019-03-16
    REASON: Has expired: Qt4 has been EOL since december 2015

Number of commits found: 4

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
16 Mar 2019 21:55:51
Original commit files touched by this commit  2.1
Revision:495967
tcberner search for other commits by this committer
Qt4 deprecation: Remove Qt4 and its consumes.

2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
(Only the first 15 lines of the commit message are shown above View all of this commit message)
02 Dec 2018 15:41:48
Original commit files touched by this commit  2.1
Revision:486467
rene search for other commits by this committer
Mark QT4 ports/functionality for removal on 2019-03-15

While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.

Submitted by:	tcberner
Reviewed by:	adridg, jhale, rene, tcberner
Approved by:	portmgr (implicit, flavor hook)
Differential Revision:	https://reviews.freebsd.org/D17741
28 Jun 2018 17:39:55
Original commit files touched by this commit  2.1
Revision:473503
tcberner search for other commits by this committer
Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk

From now on, ports that depend on Qt4 will have to set
	USES=		qt:4
	USE_QT=		foo bar
ports depending on Qt5 will use
	USES=		qt:5
	USE_QT=		foo bar

PR:		229225
Exp-run by:	antoine
Reviewed by:	mat
Approved by:	portmgr (antoine)
Differential Revision:	-https://reviews.freebsd.org/D15540
21 May 2018 20:56:18
Original commit files touched by this commit  2.1
Revision:470575
jwb search for other commits by this committer
biology/clustalx: Multiple alignment of nucleic acid and protein sequences with
GUI

Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D15505

Number of commits found: 4

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