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Get notified when packages are built

A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

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Port details
cytoscape Software to visualize molecular interaction networks, gene expression
3.6.1 biology on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.6.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-03 08:43:08
Last Update: 2022-12-11 07:41:04
Commit Hash: 1829f29
People watching this port, also watch:: firefox, chromium, tmux, tcpdump, xen-kernel
Also Listed In: java
License: LGPL21
WWW:
https://www.cytoscape.org
Description:
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/cytoscape-3.6.1/catalog.mk
  2. /usr/local/share/licenses/cytoscape-3.6.1/LICENSE
  3. /usr/local/share/licenses/cytoscape-3.6.1/LGPL21
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Dependency lines:
  • cytoscape>0:biology/cytoscape
To install the port:
cd /usr/ports/biology/cytoscape/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/cytoscape
  • pkg install cytoscape
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: cytoscape
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1530956058 SHA256 (FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz) = f3e33e99168b56768d2ee854956e59bcbb888101fd518239887524d692b78f7a SIZE (FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz) = 1235655281

Expand this list (16 items)

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SHA256 (install4j-maven-plugin-1.1.1.jar) = 301f5ca0718e630a62583561fb1a05c26ee40b5dc81ddd1ffc56bb17c813c506 SIZE (install4j-maven-plugin-1.1.1.jar) = 27105 SHA256 (cytoscape-cytoscape-3.6.1_GH0.tar.gz) = f172c9e459293661a83d2618da511901410336b76b0c1716697e60f821c2f150 SIZE (cytoscape-cytoscape-3.6.1_GH0.tar.gz) = 12785 SHA256 (cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz) = 0786e8d7877fa54d2a64d65209856a4a946df4facd3cbc947e8c65d14a035084 SIZE (cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz) = 2863 SHA256 (cytoscape-cytoscape-api-3.6.1_GH0.tar.gz) = a264a434d5942cad2ef69df7aa29fad74a6d1f11369a964d7c38462608def73b SIZE (cytoscape-cytoscape-api-3.6.1_GH0.tar.gz) = 1731631 SHA256 (cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz) = 0fcea5a4d804972db5b0cf77174a953d22da8fed6740dbaa01754eb7aea50d21 SIZE (cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz) = 29851040 SHA256 (cytoscape-cytoscape-support-3.6.1_GH0.tar.gz) = 3f13088c35d41fa616dc7e735469f360ee4d17b1838cde8291f88b01bacfe657 SIZE (cytoscape-cytoscape-support-3.6.1_GH0.tar.gz) = 52940 SHA256 (cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz) = 73fb7efb51a0413252a7e9e28d4fb7e28d16eea9f60be534fd962a5e534ca72e SIZE (cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz) = 14818052 SHA256 (cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz) = 9cf7b64a3e6effd22a20d577c7fa41b11f896e2298ef1655f2fe31c21602bce0 SIZE (cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz) = 1887

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Packages (timestamps in pop-ups are UTC):
cytoscape
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest3.6.13.6.1--3.6.1---
FreeBSD:13:quarterly3.6.13.6.1--3.6.1-3.6.1-
FreeBSD:14:latest3.6.13.6.1--3.6.1---
FreeBSD:14:quarterly3.6.13.6.1--3.6.1-3.6.1-
FreeBSD:15:latest3.6.13.6.1n/a-n/a-3.6.1-
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. maven363>0 : devel/maven363
  2. bash : shells/bash
  3. java : java/openjdk8
Runtime dependencies:
  1. bash : shells/bash
  2. java : java/openjdk8
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_cytoscape
USES:
shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/cytoscape/cytoscape/tar.gz/3.6.1?dummy=/
Collapse this list.

Number of commits found: 12

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.6.1
11 Dec 2022 07:41:04
commit hash: 1829f2959fa74b056856c69bce24ab4debaf90dacommit hash: 1829f2959fa74b056856c69bce24ab4debaf90dacommit hash: 1829f2959fa74b056856c69bce24ab4debaf90dacommit hash: 1829f2959fa74b056856c69bce24ab4debaf90da files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/cytoscape: Broken on armv6, armv7

Reported by:	fallout
3.6.1
26 Nov 2022 19:37:22
commit hash: aa0ae4f302b860e7e2ded0868e36b6d05e3fc8d6commit hash: aa0ae4f302b860e7e2ded0868e36b6d05e3fc8d6commit hash: aa0ae4f302b860e7e2ded0868e36b6d05e3fc8d6commit hash: aa0ae4f302b860e7e2ded0868e36b6d05e3fc8d6 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/cytoscape: Fix build

maven-3.6.3 should be used.
3.6.1
24 Nov 2022 21:03:41
commit hash: e588390193cab002aadaeb95ed1f89dc6966bf18commit hash: e588390193cab002aadaeb95ed1f89dc6966bf18commit hash: e588390193cab002aadaeb95ed1f89dc6966bf18commit hash: e588390193cab002aadaeb95ed1f89dc6966bf18 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/cytoscape: Unbreak by re-adding and using maven-3.6.3

Cytoscape was broken by the maven update.
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
3.6.1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.6.1
12 May 2021 11:55:52
commit hash: 463cdea856c534a2a1b94fdb05368714a839be54commit hash: 463cdea856c534a2a1b94fdb05368714a839be54commit hash: 463cdea856c534a2a1b94fdb05368714a839be54commit hash: 463cdea856c534a2a1b94fdb05368714a839be54 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
biology/cytoscape: mark unconditionally BROKEN

Approved by:	portmgr blanket
3.6.1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
3.6.1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
3.6.1
26 Nov 2019 21:46:13
Revision:518482Original commit files touched by this commit
jkim search for other commits by this committer
Clean up after java/openjdk6 and java/openjdk6-jre removal

java/openjdk6 support was removed from Mk/bsd.java.mk (r512662) and
java/openjdk6 and java/openjdk6-jre were removed from the ports tree
(r512663).  Now this patch completely removes remaining stuff from the
ports tree.

PR:			241953 (exp-run)
Reviewed by:		glewis
Approved by:		portmgr (antoine)
Differential Revision:	https://reviews.freebsd.org/D22342
3.6.1
12 Aug 2018 06:29:52
Revision:476967Original commit files touched by this commit
yuri search for other commits by this committer
biology/cytoscape: Fix license

Reported by:	linimon
3.6.1
12 Aug 2018 04:06:01
Revision:476957Original commit files touched by this commit
linimon search for other commits by this committer
Mark as broken on arm.

Approved by:	portmgr (tier-2 blanket)
3.6.1
03 Jul 2018 08:42:54
Revision:473806Original commit files touched by this commit
yuri search for other commits by this committer
New port: biology/cytoscape: Software to visualize molecular interaction
networks, gene expression

Number of commits found: 12