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Port details
cytoscape Software to visualize molecular interaction networks, gene expression
3.6.1 biology on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-03 08:43:08
Last Update: 2022-11-26 19:37:22
Commit Hash: aa0ae4f
People watching this port, also watch:: recoll, chromium, firefox
Also Listed In: java
License: LGPL21
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/cytoscape-3.6.1/catalog.mk
  2. /usr/local/share/licenses/cytoscape-3.6.1/LICENSE
  3. /usr/local/share/licenses/cytoscape-3.6.1/LGPL21
Collapse this list.
Dependency lines:
  • cytoscape>0:biology/cytoscape
To install the port:
cd /usr/ports/biology/cytoscape/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/cytoscape
  • pkg install cytoscape
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: cytoscape
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
cytoscape
ABIlatestquarterly
FreeBSD:11:aarch64pkg-falloutpkg-fallout
FreeBSD:11:amd64pkg-falloutpkg-fallout
FreeBSD:11:armv6pkg-falloutpkg-fallout
FreeBSD:11:i386pkg-falloutpkg-fallout
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-falloutpkg-fallout
FreeBSD:12:amd64pkg-falloutpkg-fallout
FreeBSD:12:armv6pkg-falloutpkg-fallout
FreeBSD:12:armv7pkg-falloutpkg-fallout
FreeBSD:12:i386pkg-falloutpkg-fallout
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-fallout3.6.1
FreeBSD:13:aarch64pkg-falloutpkg-fallout
FreeBSD:13:amd643.6.1pkg-fallout
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv7pkg-falloutpkg-fallout
FreeBSD:13:i3863.6.1pkg-fallout
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch64pkg-falloutpkg-fallout
FreeBSD:14:amd64pkg-falloutpkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv7pkg-falloutpkg-fallout
FreeBSD:14:i386pkg-falloutpkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc643.6.1pkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. maven363>0 : devel/maven363
  2. bash : shells/bash
  3. java : java/openjdk8
Runtime dependencies:
  1. bash : shells/bash
  2. java : java/openjdk8
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message

Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/cytoscape/cytoscape/tar.gz/3.6.1?dummy=/
Collapse this list.

Number of commits found: 11

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.6.1
26 Nov 2022 19:37:22
commit hash:aa0ae4f302b860e7e2ded0868e36b6d05e3fc8d6commit hash:aa0ae4f302b860e7e2ded0868e36b6d05e3fc8d6commit hash:aa0ae4f302b860e7e2ded0868e36b6d05e3fc8d6commit hash:aa0ae4f302b860e7e2ded0868e36b6d05e3fc8d6 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/cytoscape: Fix build

maven-3.6.3 should be used.
3.6.1
24 Nov 2022 21:03:41
commit hash:e588390193cab002aadaeb95ed1f89dc6966bf18commit hash:e588390193cab002aadaeb95ed1f89dc6966bf18commit hash:e588390193cab002aadaeb95ed1f89dc6966bf18commit hash:e588390193cab002aadaeb95ed1f89dc6966bf18 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/cytoscape: Unbreak by re-adding and using maven-3.6.3

Cytoscape was broken by the maven update.
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
3.6.1
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.6.1
12 May 2021 11:55:52
commit hash:463cdea856c534a2a1b94fdb05368714a839be54commit hash:463cdea856c534a2a1b94fdb05368714a839be54commit hash:463cdea856c534a2a1b94fdb05368714a839be54commit hash:463cdea856c534a2a1b94fdb05368714a839be54 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
biology/cytoscape: mark unconditionally BROKEN

Approved by:	portmgr blanket
3.6.1
07 Apr 2021 08:09:01
commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
3.6.1
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
3.6.1
26 Nov 2019 21:46:13
Revision:518482Original commit files touched by this commit
jkim search for other commits by this committer
Clean up after java/openjdk6 and java/openjdk6-jre removal

java/openjdk6 support was removed from Mk/bsd.java.mk (r512662) and
java/openjdk6 and java/openjdk6-jre were removed from the ports tree
(r512663).  Now this patch completely removes remaining stuff from the
ports tree.

PR:			241953 (exp-run)
Reviewed by:		glewis
Approved by:		portmgr (antoine)
Differential Revision:	https://reviews.freebsd.org/D22342
3.6.1
12 Aug 2018 06:29:52
Revision:476967Original commit files touched by this commit
yuri search for other commits by this committer
biology/cytoscape: Fix license

Reported by:	linimon
3.6.1
12 Aug 2018 04:06:01
Revision:476957Original commit files touched by this commit
linimon search for other commits by this committer
Mark as broken on arm.

Approved by:	portmgr (tier-2 blanket)
3.6.1
03 Jul 2018 08:42:54
Revision:473806Original commit files touched by this commit
yuri search for other commits by this committer
New port: biology/cytoscape: Software to visualize molecular interaction
networks, gene expression

Number of commits found: 11