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Port details
cytoscape Software to visualize molecular interaction networks, gene expression
3.6.1 biology on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.6.1Version of this port present on the latest quarterly branch.
Broken BROKEN: fails to build: Cytoscape Third-Party Dependencies (third-party): FAILURE
Ignore IGNORE: is marked as broken: fails to build: Cytoscape Third-Party Dependencies (third-party): FAILURE
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-03 08:43:08
Last Update: 2021-05-12 11:55:52
Commit Hash: 463cdea
People watching this port, also watch:: openjdk15, recoll, chromium, firefox
Also Listed In: java
License: LGPL21
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/cytoscape-3.6.1/catalog.mk
  2. /usr/local/share/licenses/cytoscape-3.6.1/LICENSE
  3. /usr/local/share/licenses/cytoscape-3.6.1/LGPL21
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Dependency lines:
  • cytoscape>0:biology/cytoscape
To install the port: cd /usr/ports/biology/cytoscape/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: cytoscape
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
cytoscape
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-3.6.1
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc643.6.1-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. mvn : devel/maven
  2. bash : shells/bash
  3. java : java/openjdk8
Runtime dependencies:
  1. bash : shells/bash
  2. java : java/openjdk8
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/cytoscape/cytoscape/tar.gz/3.6.1?dummy=/
Collapse this list.

Number of commits found: 7

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
12 May 2021 11:55:52
 files touched by this commit commit hash:463cdea856c534a2a1b94fdb05368714a839be54  3.6.1
amdmi3 search for other commits by this committer
biology/cytoscape: mark unconditionally BROKEN

Approved by:	portmgr blanket
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  3.6.1
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  3.6.1
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
26 Nov 2019 21:46:13
Original commit files touched by this commit Revision:518482  3.6.1
jkim search for other commits by this committer
Clean up after java/openjdk6 and java/openjdk6-jre removal

java/openjdk6 support was removed from Mk/bsd.java.mk (r512662) and
java/openjdk6 and java/openjdk6-jre were removed from the ports tree
(r512663).  Now this patch completely removes remaining stuff from the
ports tree.

PR:			241953 (exp-run)
Reviewed by:		glewis
Approved by:		portmgr (antoine)
Differential Revision:	https://reviews.freebsd.org/D22342
12 Aug 2018 06:29:52
Original commit files touched by this commit Revision:476967  3.6.1
yuri search for other commits by this committer
biology/cytoscape: Fix license

Reported by:	linimon
12 Aug 2018 04:06:01
Original commit files touched by this commit Revision:476957  3.6.1
linimon search for other commits by this committer
Mark as broken on arm.

Approved by:	portmgr (tier-2 blanket)
03 Jul 2018 08:42:54
Original commit files touched by this commit Revision:473806  3.6.1
yuri search for other commits by this committer
New port: biology/cytoscape: Software to visualize molecular interaction
networks, gene expression

Number of commits found: 7