| Port details |
- diamond BLAST-compatible local sequence aligner
- 2.2.8 biology
 =0      2.2.5Version of this port present on the latest quarterly branch. - Maintainer: jrm@FreeBSD.org
- Port Added: 2016-05-06 08:45:09
- Last Update: 2026-10-11 02:56:45
- Commit Hash: 1385a5b
- License: GPLv3
- WWW:
- http://ab.inf.uni-tuebingen.de/software/diamond/
- https://github.com/bbuchfink/diamond
- Description:
- DIAMOND is a BLAST-compatible local aligner for mapping protein and translated
DNA query sequences against a protein reference database (BLASTP and BLASTX
alignment mode). The speedup over BLAST is up to 20,000 on short reads at a
typical sensitivity of 90-99% relative to BLAST depending on the data and
settings.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - USE_RC_SUBR (Service Scripts)
- no SUBR information found for this port
- Dependency lines:
-
- diamond>0:biology/diamond
- To install the port:
- cd /usr/ports/biology/diamond/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/diamond
- pkg install diamond
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: diamond
- Flavors: there is no flavor information for this port.
- ONLY_FOR_ARCHS: aarch64 amd64 powerpc64 powerpc64le
- distinfo:
- TIMESTAMP = 1791672731
SHA256 (bbuchfink-diamond-v2.2.8_GH0.tar.gz) = a9cc37bd955fa7ed25447278a0b4f97e7036a9abd64f60e6565a56c28219c54c
SIZE (bbuchfink-diamond-v2.2.8_GH0.tar.gz) = 16800398
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- cmake : devel/cmake-core
- ninja : devel/ninja
- Library dependencies:
-
- libsqlite3.so : databases/sqlite3
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_diamond
- USES:
- cmake localbase sqlite
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 108 (showing only 8 on this page)
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
0.8.14
14 Jul 2016 16:53:06
  |
pawel |
Trim excess tabs, no-op change |
0.8.14
14 Jul 2016 16:49:41
|
pawel |
Update to version 0.8.14
PR: 211078
Submitted by: Joseph Mingrone (maintainer) |
0.8.11
07 Jul 2016 15:46:12
|
amdmi3 |
- Update to 0.8.11
PR: 210877
Submitted by: jrm@ftfl.ca (maintainer) |
0.8.9
30 Jun 2016 01:37:22
|
junovitch |
biology/diamond: update 0.8.6 -> 0.8.9
PR: 210710
Submitted by: Joseph Mingrone <jrm@ftfl.ca> (maintainer) |
0.8.6
17 Jun 2016 19:53:46
|
rm |
biology/diamond: update to 0.8.6
PR: 210345
Submitted by: Joseph Mingrone <jrm@ftfl.ca> (maintainer) |
0.8.5
09 Jun 2016 01:39:58
|
matthew |
Update to 0.8.5
PR: 209611
Submitted by: jrm@ftfl.ca (maintainer) |
0.7.12_1
18 May 2016 16:22:07
|
antoine |
Fix DEPENDS |
0.7.12
06 May 2016 08:45:02
|
wen |
DNA query sequences against a protein reference database (BLASTP and BLASTX
alignment mode). The speedup over BLAST is up to 20,000 on short reads at a
typical sensitivity of 90-99% relative to BLAST depending on the data and
settings.
WWW: http://ab.inf.uni-tuebingen.de/software/diamond/
PR: 208998
Submitted by: jrm@ftfl.ca |
Number of commits found: 108 (showing only 8 on this page)
|
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