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Port details
dsr-pdb Simple C++ PDB reader (reads the protein description format)
1.0.3_5 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.0.3_5Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-01-29 07:57:18
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
License: LGPL21
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (35 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/dsr-pdb-1.0.3_5/catalog.mk
  3. /usr/local/share/licenses/dsr-pdb-1.0.3_5/LICENSE
  4. /usr/local/share/licenses/dsr-pdb-1.0.3_5/LGPL21
  5. bin/pdb_align
  6. bin/pdb_align_points
  7. bin/pdb_cat
  8. bin/pdb_distance
  9. bin/pdb_distance_matrix
  10. bin/pdb_split
  11. bin/pdb_stats
  12. bin/pdb_transform
  13. include/dsrpdb/Atom.h
  14. include/dsrpdb/Matrix.h
  15. include/dsrpdb/Model.h
  16. include/dsrpdb/PDB.h
  17. include/dsrpdb/PDB_index.h
  18. include/dsrpdb/Point.h
  19. include/dsrpdb/Protein.h
  20. include/dsrpdb/Residue.h
  21. include/dsrpdb/Transform.h
  22. include/dsrpdb/align.h
  23. include/dsrpdb/config.h
  24. include/dsrpdb/distance.h
  25. include/dsrpdb/geometry.h
  26. include/dsrpdb/geometry_internal.h
  27. include/dsrpdb/iterator.h
  28. include/dsrpdb/label.h
  29. include/dsrpdb/labeled_index.h
  30. include/dsrpdb/small_map.h
  31. lib/libdsrpdb.a
  32. lib/libdsrpdb.so
  33. @owner
  34. @group
  35. @mode
Collapse this list.
Dependency lines:
  • For RUN/BUILD depends:
    • dsr-pdb>0:biology/dsr-pdb
  • For LIB depends:
    • libdsrpdb.so:biology/dsr-pdb
To install the port: cd /usr/ports/biology/dsr-pdb/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/dsr-pdb
  • pkg install dsr-pdb
PKGNAME: dsr-pdb
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
dsr-pdb
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd641.0.3_51.0.3_5
FreeBSD:11:armv6-1.0.3_5
FreeBSD:11:i3861.0.3_51.0.3_5
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd641.0.3_51.0.3_5
FreeBSD:12:armv6-1.0.3_5
FreeBSD:12:armv7-1.0.3_5
FreeBSD:12:i3861.0.3_51.0.3_5
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-1.0.3_5
FreeBSD:13:aarch64--
FreeBSD:13:amd641.0.3_51.0.3_5
FreeBSD:13:armv61.0.3_51.0.3_5
FreeBSD:13:armv71.0.3_51.0.3_5
FreeBSD:13:i3861.0.3_51.0.3_5
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc641.0.3_51.0.3_5
FreeBSD:14:aarch64--
FreeBSD:14:amd641.0.3_5-
FreeBSD:14:armv61.0.3_5-
FreeBSD:14:armv71.0.3_5-
FreeBSD:14:i3861.0.3_5-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc641.0.3_5-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
Library dependencies:
  1. libboost_program_options.so : devel/boost-libs
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://graphics.stanford.edu/~drussel/
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Number of commits found: 9

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  1.0.3_5
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.0.3_5
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
11 Dec 2019 17:53:49
Original commit files touched by this commit Revision:519824  1.0.3_5
jbeich search for other commits by this committer
devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
19 Aug 2019 15:35:28
Original commit files touched by this commit Revision:509290  1.0.3_4
jbeich search for other commits by this committer
devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  1.0.3_3
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
12 Apr 2019 06:36:31
Original commit files touched by this commit Revision:498698  1.0.3_2
jbeich search for other commits by this committer
devel/boost-*: update to 1.70.0

Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303
05 Feb 2019 19:02:00
Original commit files touched by this commit Revision:492270  1.0.3_1
yuri search for other commits by this committer
biology/dsr-pdb: Correct typo
05 Feb 2019 19:00:37
Original commit files touched by this commit Revision:492269  1.0.3
yuri search for other commits by this committer
biology/dsr-pdb: Add c++11 flags because boost isn't found without it

Also add patches for missing includes that only gcc complains about.

PR:		235519
Reported by:	Piotr Kubaj <pkubaj@anongoth.pl>
29 Jan 2019 07:56:30
Original commit files touched by this commit Revision:491546  1.0.3
yuri search for other commits by this committer
New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein description
format)

Number of commits found: 9