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Port details
dsr-pdb Simple C++ PDB reader (reads the protein description format)
1.0.3_5 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 1.0.3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-01-29 07:57:18
Last Update: 2019-12-11 17:53:49
SVN Revision: 519824
License: LGPL21
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (32 items)
  1. @ldconfig
  2. /usr/local/share/licenses/dsr-pdb-1.0.3_5/catalog.mk
  3. /usr/local/share/licenses/dsr-pdb-1.0.3_5/LICENSE
  4. /usr/local/share/licenses/dsr-pdb-1.0.3_5/LGPL21
  5. bin/pdb_align
  6. bin/pdb_align_points
  7. bin/pdb_cat
  8. bin/pdb_distance
  9. bin/pdb_distance_matrix
  10. bin/pdb_split
  11. bin/pdb_stats
  12. bin/pdb_transform
  13. include/dsrpdb/Atom.h
  14. include/dsrpdb/Matrix.h
  15. include/dsrpdb/Model.h
  16. include/dsrpdb/PDB.h
  17. include/dsrpdb/PDB_index.h
  18. include/dsrpdb/Point.h
  19. include/dsrpdb/Protein.h
  20. include/dsrpdb/Residue.h
  21. include/dsrpdb/Transform.h
  22. include/dsrpdb/align.h
  23. include/dsrpdb/config.h
  24. include/dsrpdb/distance.h
  25. include/dsrpdb/geometry.h
  26. include/dsrpdb/geometry_internal.h
  27. include/dsrpdb/iterator.h
  28. include/dsrpdb/label.h
  29. include/dsrpdb/labeled_index.h
  30. include/dsrpdb/small_map.h
  31. lib/libdsrpdb.a
  32. lib/libdsrpdb.so
Collapse this list.
Dependency lines:
  • dsr-pdb>0:biology/dsr-pdb
To install the port: cd /usr/ports/biology/dsr-pdb/ && make install clean
To add the package: pkg install dsr-pdb
PKGNAME: dsr-pdb
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake : devel/gmake
Library dependencies:
  1. libboost_program_options.so : devel/boost-libs
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://graphics.stanford.edu/~drussel/

Number of commits found: 7

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
11 Dec 2019 17:53:49
Original commit files touched by this commit  1.0.3_5
Revision:519824
jbeich search for other commits by this committer
devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
19 Aug 2019 15:35:28
Original commit files touched by this commit  1.0.3_4
Revision:509290
jbeich search for other commits by this committer
devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774
26 Jul 2019 20:46:57
Original commit files touched by this commit  1.0.3_3
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
12 Apr 2019 06:36:31
Original commit files touched by this commit  1.0.3_2
Revision:498698
jbeich search for other commits by this committer
devel/boost-*: update to 1.70.0

Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303
05 Feb 2019 19:02:00
Original commit files touched by this commit  1.0.3_1
Revision:492270
yuri search for other commits by this committer
biology/dsr-pdb: Correct typo
05 Feb 2019 19:00:37
Original commit files touched by this commit  1.0.3
Revision:492269
yuri search for other commits by this committer
biology/dsr-pdb: Add c++11 flags because boost isn't found without it

Also add patches for missing includes that only gcc complains about.

PR:		235519
Reported by:	Piotr Kubaj <pkubaj@anongoth.pl>
29 Jan 2019 07:56:30
Original commit files touched by this commit  1.0.3
Revision:491546
yuri search for other commits by this committer
New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein description
format)

Number of commits found: 7

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