dsr-pdb is a simple C++ PDB reader along with a couple of programs which use it
to manipulate pdb files (applying a rigid transform or splitting/merging). The
are aimed at people interested in proteins from a geometric viewpoint as they
allow easy access to the geometry and bond structure in addition of the
biological information. The reader has two modes for reading/writing a pdb file.
The simplest one, through the Protein class just reads and writes a single
protein from/to a pdb file (which must have only one chain, but can have
multiple models). The second, through the PDB class can handle pdb files with
multiple models and herogens (although these are just passed through and not
currently interpreted).
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
biology/dsr-pdb: Add c++11 flags because boost isn't found without it
Also add patches for missing includes that only gcc complains about.
PR: 235519
Reported by: Piotr Kubaj <pkubaj@anongoth.pl>
