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non port: biology/emboss/Makefile

Number of commits found: 89

Friday, 29 Dec 2023
18:24 Muhammad Moinur Rahman (bofh) search for other commits by this committer
*/*: Refactor with IGNORE_WITH_MYSQL

- There are multiple ports which has MYSQL options and are non-DEFAULT.
  Most of the time committers actually forget to check with the OPTION
  enabled and in some cases they are BROKEN with newr versions of mysql.
  So test with different versions of mysql and mark IGNOPRE_WITH_MYSQL
  appropriately. Due to the EOL of 5.7 this has not been checked.
- Unbreak sysutils/cfengine* with MySQL 8.0 and later
- The primary purpose of running this check is having statistics of the
  MySQL usability over MariaDB to explore the future possibility of
  shifting to MariaDB as the default as major ports upstream have moved
  their codebase to support MariaDB over MySQL.
- The following actions will also be taken after the sunset of MySQL 5.7
  If a port is broken on all instances of MySQL/MariaDB:
  - If a port has the option of multiple DB backends and MySQL is the
    default then the DEFAULT will be changed to PGSQL/SQLITE before
    2024Q1. And the OPTION will be removed before 2024Q2. If a
    MAINTAINER is aware about such cases and want to prefer PGSQL over
    SQLITE or vice versa please do so at your own accord. Otherwise
    PGSQL will be preferred over SQLITE.
  - If a port has the option of multiple DB backends and MySQL is not
    the default then the the OPTION will be removed before 2024Q1.

Approved by:	portmgr (blanket)
commit hash: ee6c86aea577dec2643f6a9915033feda7f67e26 commit hash: ee6c86aea577dec2643f6a9915033feda7f67e26 commit hash: ee6c86aea577dec2643f6a9915033feda7f67e26 commit hash: ee6c86aea577dec2643f6a9915033feda7f67e26 ee6c86a
Sunday, 29 Oct 2023
22:53 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/emboss: Optionize mysql support

The port builds fine without mysql and as MySQL57 is reaching end of
life so optionize MYSQL so that other flavors can be used and still
there is an available pkg for this port.

Approved by:	portmgr (blanket)
commit hash: 23253ea43f819c9d3f5a32109a5086064908c04e commit hash: 23253ea43f819c9d3f5a32109a5086064908c04e commit hash: 23253ea43f819c9d3f5a32109a5086064908c04e commit hash: 23253ea43f819c9d3f5a32109a5086064908c04e 23253ea
Wednesday, 1 Feb 2023
10:39 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/emboss: Ignore with mysql 8.0

PR:		269203
Reported by:	exp-run
commit hash: 6db7a8c38ed1459761006281e6d861901fe8e228 commit hash: 6db7a8c38ed1459761006281e6d861901fe8e228 commit hash: 6db7a8c38ed1459761006281e6d861901fe8e228 commit hash: 6db7a8c38ed1459761006281e6d861901fe8e228 6db7a8c
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Friday, 29 Oct 2021
09:50 Stefan Eßer (se) search for other commits by this committer
*/*: Remove redundant '-[0-9]*' from CONFLICTS

The conflict checks compare the patterns first against the package
names without version (as reported by "pkg query "%n"), then - if
there was no match - agsinst the full package names including the
version (as reported by "pkg query "%n-%v").

Many CONFLICTS definitions used patterns like "bash-[0-9]*" to filter
for the bash package in any version. But that pattern is functionally
identical with just "bash".

Approved by:	portmgr (blanket)
commit hash: 819f25b36d45b8ac5593ec8e6f470d9ad454b08a commit hash: 819f25b36d45b8ac5593ec8e6f470d9ad454b08a commit hash: 819f25b36d45b8ac5593ec8e6f470d9ad454b08a commit hash: 819f25b36d45b8ac5593ec8e6f470d9ad454b08a 819f25b
Friday, 24 Sep 2021
21:34 Jason W. Bacon (jwb) search for other commits by this committer
biology/emboss: Add "emboss" command in ${LOCALBASE}/bin

Standard emboss commands are installed under a special prefix because
of multiple conflicts.  The emboss command turns the standard commands
into subcommands, so no special PATH is needed.

    /usr/local/emboss/bin/needle [args]

can be run as

    emboss needle [args]
commit hash: c68b6dc6448c618b79c8d1800d25b789b1b01a90 commit hash: c68b6dc6448c618b79c8d1800d25b789b1b01a90 commit hash: c68b6dc6448c618b79c8d1800d25b789b1b01a90 commit hash: c68b6dc6448c618b79c8d1800d25b789b1b01a90 c68b6dc
Monday, 6 Sep 2021
15:13 Jason W. Bacon (jwb) search for other commits by this committer
biology/emboss: Put emboss-shell in default PATH

PREFIX is overridden by default in the port Makefile, so PREFIX/bin
is not normally in PATH.  The purpose of emboss-shell is to prepend
PREFIX/bin to PATH to give access to emboss tools.

Also fix tcsh detection.

PR:             258316
commit hash: e47c577da6ce40e629041a92a327d9648ef72bd0 commit hash: e47c577da6ce40e629041a92a327d9648ef72bd0 commit hash: e47c577da6ce40e629041a92a327d9648ef72bd0 commit hash: e47c577da6ce40e629041a92a327d9648ef72bd0 e47c577
14:21 Jason W. Bacon (jwb) search for other commits by this committer
biology/emboss: Add emboss-shell: Run subshell with proper PATH

Also silence portlint and stage-qa warnings

PR:             258316
Approved by:    wen
commit hash: fa2e0b8c66d459b05b1a6624cd482950f9ea3376 commit hash: fa2e0b8c66d459b05b1a6624cd482950f9ea3376 commit hash: fa2e0b8c66d459b05b1a6624cd482950f9ea3376 commit hash: fa2e0b8c66d459b05b1a6624cd482950f9ea3376 fa2e0b8
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Monday, 4 May 2020
21:31 dinoex search for other commits by this committer
- update libgd to 2.3.0
- new option RAQM
- resurrect deprecated gdlib-config
- bump dependend ports
Original commitRevision:533989 
Thursday, 7 Nov 2019
20:20 zeising search for other commits by this committer
Sprinkle more USES=xorg
Original commitRevision:517008 
Wednesday, 20 Jul 2016
09:33 dinoex search for other commits by this committer
- update libgd to 2.2.2
- new MASTER_SITES
- add security patch
PR:		210913
Submitted by:	Piotr Kubaj
MFH:		2016Q3
Security: CVE-2015-8874
Security: CVE-2016-3074
Security: http://www.openwall.com/lists/oss-security/2016/07/12/4
Original commitRevision:418829 
Friday, 1 Apr 2016
13:29 mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:412344 
Wednesday, 18 Mar 2015
21:52 bapt search for other commits by this committer
Fix packaging as a user (pkg already takes care of credentials)
Strip binaries
Original commitRevision:381580 
Thursday, 25 Dec 2014
20:54 bapt search for other commits by this committer
Bump portrevision after png update
Original commitRevision:375598 
19:04 antoine search for other commits by this committer
Change libpng15.so to libpng.so in LIB_DEPENDS to prepare the upgrade
Original commitRevision:375594 
Monday, 9 Jun 2014
11:21 olgeni search for other commits by this committer
Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. Categories A-C.

CR:		D196
Approved by:	portmgr (bapt)
Original commitRevision:357139 
Thursday, 5 Jun 2014
03:28 miwi search for other commits by this committer
- Update to 6.6.0
- Stage support

PR:		190508
Submitted by:	Muhammad Moinur Rahman
Original commitRevision:356575 
Monday, 5 May 2014
09:45 bapt search for other commits by this committer
Convert all :U to :tu and :L to :tl

Since FreeBSD 8.4 and FreeBSD 9.1 make(1) do support :tu and :tl as a
replacement for :U and :L (which has been marked as deprecated)

bmake which is the default on FreeBSD 10+ only support by default
:tu/:tl a hack has been added at the time to support :U and :L to ease
migration. This hack is now not necessary anymore

Note that this makes the ports tree incompatible with make(1) from
FreeBSD 8.3 or earlier

With hat:	portmgr
Original commitRevision:352986 
Wednesday, 11 Dec 2013
14:43 bapt search for other commits by this committer
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
Original commitRevision:336171 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Friday, 9 Aug 2013
14:05 dinoex search for other commits by this committer
- update libdg to 2.1.0
Original commitRevision:324437 
Tuesday, 9 Jul 2013
21:49 bapt search for other commits by this committer
Convert from USE_MOTIF to USES=motif
While here:
- trim headers
- Remove indefinite article from comment
- convert USE_GMAKE to USES=gmake
Original commitRevision:322587 
Monday, 1 Oct 2012
14:55 wen search for other commits by this committer
- Take maintainership
Original commitRevision:305131 
14:45 tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
Original commitRevision:305130 
Friday, 1 Jun 2012
05:26 dinoex search for other commits by this committer
- update png to 1.5.10
Original commit
Monday, 2 May 2011
12:44 makc search for other commits by this committer
Bump PORTREVISION after open-mofit update
Original commit
Saturday, 4 Dec 2010
07:34 ade search for other commits by this committer
Sync to new bsd.autotools.mk
Original commit
Wednesday, 7 Apr 2010
01:16 wen search for other commits by this committer
- Update to 6.2.0

Submitted by:   Wen Heping(myself)
Approved by:    maintainer(via Email)
Original commit
Sunday, 28 Mar 2010
06:47 dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
Original commit
Friday, 5 Feb 2010
11:46 dinoex search for other commits by this committer
- update to jpeg-8
Original commit
Friday, 14 Aug 2009
08:33 miwi search for other commits by this committer
- Update MASTER_SITES

PR:             137750
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Sunday, 2 Aug 2009
19:36 mezz search for other commits by this committer
-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
-Update libtool and libltdl to 2.2.6a.
-Remove devel/libtool15 and devel/libltdl15.
-Fix ports build with libtool22/libltdl22.
-Bump ports that depend on libltdl22 due to shared library version change.
-Explain what to do update in the UPDATING.

It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop
and applications in the runtime.

With help:      marcus and kwm
Pointyhat-exp:  a few times by pav
Tested by:      pgollucci, "Romain Tartière" <romain@blogreen.org>, and
                a few MarcusCom CVS users. Also, I might have missed a few.
Repocopy by:    marcus
Approved by:    portmgr
Original commit
Friday, 31 Jul 2009
13:57 dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
Original commit
Saturday, 14 Mar 2009
15:16 miwi search for other commits by this committer
- Force commit to correct the entry
- Update to 6.0.1

PR:             132504
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Original commit
15:14 miwi search for other commits by this committer
- Update to 0.1.24

PR:             132527
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Original commit
Thursday, 17 Apr 2008
17:06 pav search for other commits by this committer
- Replace SF with second working master site

Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
01:31 rafan search for other commits by this committer
- It seems that upstream removes their distfiles from sourceforge, so add
  the download site pointed by their webpage as first choice.

Noticed by:    pointyhat via pav
Original commit
Sunday, 13 Apr 2008
07:22 rafan search for other commits by this committer
- Update to 5.0.0

PR:             ports/122437
Submitted by:   Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
Original commit
Sunday, 23 Mar 2008
16:44 miwi search for other commits by this committer
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION

Approved by:    portmgr (xorg cleanup)
Original commit
Saturday, 19 May 2007
20:32 flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
Original commit
Friday, 31 Mar 2006
09:43 thierry search for other commits by this committer
For EMBOSS:

        This patch brings EMBOSS up to date with the current version.

        i.   The patches included in files/ are bugfixes for files in
             EMBOSS-3.0.0 that appeared after the release. They are
             documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README

             This is just 'for the record' so that we remember to remove these
             patches in the next update.

        ii.  EMBOSS is now installed by default in LOCALBASE/emboss
             This is to avoid CONFLICTS with other ports that install files
             with the same names. Installing EMBOSS to another PREFIX is also
             possible.

        iii. now EMBASSY and EMBOSS both store their distfiles in the same
             DIST_SUBDIR

        iv.  use built-in PKGMESSAGE and SUB_FILES instead of doing it the old
             (manual) way

        For EMBASSY:

        This update brings embassy in sync with the update of EMBOSS to 3.0.0.

        Things that changed from previous version of the port:

        i.  embassy now installs by default in $LOCALBASE/emboss (the
            new default PREFIX for emboss as well).

        ii. changed DIST_SUBDIR so that all the distfiles are put together with
            emboss. This makes sense(TM)

        iii. incorporated new EMBASSY apps (this accounts for the changes in
             OPTIONS and pkg-plist)

        iv.  removed obsoleted patches

        Finally, I included a sample text that could go in UPDATING.

PR:             93053
Submitted by:   Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer)
Original commit
Thursday, 23 Feb 2006
10:40 ade search for other commits by this committer
Conversion to a single libtool environment.

Approved by:    portmgr (kris)
Original commit
Thursday, 2 Feb 2006
23:12 marcus search for other commits by this committer
Remove CONFLICTS with nss.
Original commit
Tuesday, 15 Nov 2005
06:52 ade search for other commits by this committer
Mass-conversion to the USE_AUTOTOOLS New World Order.  The code present
in bsd.autotools.mk essentially makes this a no-op given that all the
old variables set a USE_AUTOTOOLS_COMPAT variable, which is parsed in
exactly the same way as USE_AUTOTOOLS itself.

Moreover, USE_AUTOTOOLS has already been extensively tested by the GNOME
team -- all GNOME 2.12.x ports use it.

Preliminary documentation can be found at:
        http://people.FreeBSD.org/~ade/autotools.txt

which is in the process of being SGMLized before introduction into the
Porters Handbook.

Light blue touch-paper.  Run.
Original commit
Sunday, 29 May 2005
18:26 pav search for other commits by this committer
- Update to 2.10.0

PR:             ports/81579
Submitted by:   "Choe, Cheng-Dae" <whitekid@gmail.com>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Friday, 11 Feb 2005
21:11 sem search for other commits by this committer
- Add (or fix) CONFLICTS line. The ports install bin/digest.

Approved by:    portmgr (krion)
Original commit
Friday, 26 Nov 2004
01:11 sem search for other commits by this committer
- Update to 2.9.0
- Pass maintainership to submitter

PR:             ports/74333
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
Original commit
Saturday, 20 Nov 2004
07:40 linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.
Original commit
Wednesday, 23 Jun 2004
08:20 vs search for other commits by this committer
Fix MASTER_SITES:
 - add trailing slash
 - ftp.ebi.ac.uk only has 2.8.0

PR:             ports/67427
Submitted by:   Roman Neuhauser
Approved by:    maintainer timeout
Original commit
Wednesday, 4 Feb 2004
05:21 marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
Original commit
Thursday, 20 Nov 2003
15:06 trevor search for other commits by this committer
Define USE_PERL5_BUILD, not erroneous USE_PERL.

Submitted by:   Oliver Eikemeier
Original commit
13:51 trevor search for other commits by this committer
Define USE_PERL to make Perl available for (mostly deprecated)
"perl -pi -e" construction.
Original commit
Monday, 18 Aug 2003
16:15 nork search for other commits by this committer
o Main modification
  graphics/gd(based on 1.8.4)    -> graphics/gd1
  graphics/gd2(based on 2.0.15)  -> graphics/gd
  graphics/p5-GD(based on 1.41)  -> graphics/p5-GD1
  graphics/p5-GD2(based on 2.07) -> graphics/p5-GD
  japanese/gd                    -> japanese/gd1
  japanese/gd2                   -> japanese/gd
o Include some feature
  WITH_XPM(w/, w/o WITHOUT_X11)
o Chase this modification
o Fix build error [1]

PR:             ports/54540
Submitted by:   Ports Fury
Approved by:    maintainer (blanket)
Reported by:    bento via kris [1]
Original commit
Friday, 8 Aug 2003
04:40 kris search for other commits by this committer
This port is scheduled for removal on Nov 7 2003 if it is still broken at
that time and no PRs have been submitted to fix it.  If you are interested
in saving this port, please send your patches to the maintainer.  If the
maintainer is unresponsive or the port has no maintainer, then please
submit them via send-pr.
Original commit
Thursday, 7 Aug 2003
09:29 kris search for other commits by this committer
BROKEN: Checksum mismatch
Original commit
Friday, 11 Jul 2003
18:16 nork search for other commits by this committer
o Change library name from libgd to libgd1.
o Do not install everything except headers and libraries
  (to avoid conflicting with graphics/gd2)
o Fix dependency on new libgd1(for many ports).

PR:             ports/54100
Submitted by:   Ports Fury
Original commit
Friday, 7 Mar 2003
05:56 ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Original commit
Friday, 27 Sep 2002
08:58 wjv search for other commits by this committer
- Unbreak fetching of distfiles.  (Needs update as soon as freeze is over.)

Submitted by:   kris, bento
Approved by:    Implicitly by first rule of ports freeze, I hope!
Original commit
Friday, 20 Sep 2002
20:45 kris search for other commits by this committer
BROKEN: Does not fetch
Original commit
Friday, 5 Jul 2002
10:09 wjv search for other commits by this committer
- Update to version 2.4.1
- Unmark BROKEN
- Start adding support for Jemboss Java-based GUI (not active yet)

PR:             40198 ; many private requests
Submitted by:   Tilman Linneweh <tilman@arved.de> (2.4.1 update)
Original commit
Friday, 17 May 2002
09:24 kris search for other commits by this committer
BROKEN: incorrect checksums
Original commit
Monday, 25 Mar 2002
09:19 sobomax search for other commits by this committer
Add USE_SUBMAKE, where it might be necessary.
Original commit
Friday, 18 Jan 2002
14:04 wjv search for other commits by this committer
- Update to version 2.2.0   - Update included EMBASSY package EMNU   - Fix a
long-standing bug in Makefile that would preclude PKGMESSAGE from     being
generated properly   - Consider this an interim update merely to track the
latest version - more     work is required to activate the newly included
"Jemboss" Java GUI     interface    
Original commit
Friday, 3 Aug 2001
12:32 wjv search for other commits by this committer
- Update port to version 2.0.1   - Add two new EMBASSY applications, MEME and
HMMER.    
Original commit
Wednesday, 27 Jun 2001
11:15 wjv search for other commits by this committer
Updating my email address in my remaining ports.    
Original commit
Friday, 15 Jun 2001
13:11 wjv search for other commits by this committer
Update to 1.13.3; remove bogus file.    
Original commit
Wednesday, 30 May 2001
15:34 kevlo search for other commits by this committer
Update to version 1.13.1    
Original commit
Monday, 7 May 2001
13:18 jeh search for other commits by this committer
Update the EMBOSS suite (biology/emboss) to version 1.12.0    
Original commit
Monday, 12 Mar 2001
10:33 nbm search for other commits by this committer
Update the EMBOSS suite to v1.11.0    
Original commit
Wednesday, 28 Feb 2001
15:58 kevlo search for other commits by this committer
Update to version 1.10.1    
Original commit
Tuesday, 20 Feb 2001
15:51 kevlo search for other commits by this committer
Update to version 1.10.0    
Original commit
Monday, 12 Feb 2001
10:01 knu search for other commits by this committer
Chase graphics/gd's shlib version bump.    
Original commit
Monday, 29 Jan 2001
15:48 kevlo search for other commits by this committer
- Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1   - Update the EMBASSY
package EMNU from 1.0.2 to 1.0.3   - Merged the four pkg-plist* files into one  
 
Original commit
Wednesday, 24 Jan 2001
11:36 kevlo search for other commits by this committer
Upgrade to version 1.9.0    
Original commit
Monday, 4 Dec 2000
13:00 roam search for other commits by this committer
Update distfiles' checksums after the distfiles have been rerolled yet   again
without changing names or versions.  Also add a new MASTER_SITE.    
Original commit
Tuesday, 28 Nov 2000
01:43 jeh search for other commits by this committer
- Update port biology/emboss from 1.7.0 to 1.8.0    
Original commit
Sunday, 19 Nov 2000
03:06 jeh search for other commits by this committer
Make nolonger support :U.  Fix to compensate for that.    
Original commit
Monday, 13 Nov 2000
13:48 jeh search for other commits by this committer
- This is a fairly extensive rework of this port.   - "EMBASSY" applications are
third party tools which have been adapted to     function as part of EMBOSS, but
which are not included with the base EMBOSS     distribution for licensing or
other reasons.  This new version of the     EMBOSS port now contains the three
current EMBASSY applications as well,     and during installation the user is
presented with a dialog(1) menu to     choose which of these should be
isntalled.    
Original commit
Wednesday, 1 Nov 2000
11:54 jeh search for other commits by this committer
Make portlint happy, remove a space    
Original commit
11:49 jeh search for other commits by this committer
Update to version 1.7.0    
Original commit
Tuesday, 10 Oct 2000
05:54 kevlo search for other commits by this committer
- Update to 1.6.0   - Reorder packing list    
Original commit
Friday, 22 Sep 2000
11:24 kris search for other commits by this committer
Add USE_XLIB    
Original commit
Friday, 8 Sep 2000
11:07 nbm search for other commits by this committer
Upgrade to 1.5.0    
Original commit
Thursday, 7 Sep 2000
15:02 nbm search for other commits by this committer
Update to emboss 1.4.0.    
Original commit
Monday, 21 Aug 2000
11:07 sobomax search for other commits by this committer
USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.    
Original commit
Saturday, 12 Aug 2000
17:15 nbm search for other commits by this committer
Update to emboss 1.1.0, fixing some style bugs too.    
Original commit
Monday, 31 Jul 2000
20:13 nbm search for other commits by this committer
Add emboss, the European Molecular Biology Open Software Suite    
Original commit

Number of commits found: 89