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Port details
erminej Analyses of gene sets such as gene expression profiling studies
3.2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.2Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-07-09 12:30:08
Last Update: 2021-07-09 12:26:58
Commit Hash: e44f917
Also Listed In: java
License: APACHE20
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (37 items)
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  1. /usr/local/share/licenses/erminej-3.2/catalog.mk
  2. /usr/local/share/licenses/erminej-3.2/LICENSE
  3. /usr/local/share/licenses/erminej-3.2/APACHE20
  4. bin/ermineJ
  5. etc/forehead.conf
  6. share/java/classes/erminej/antlr.jar
  7. share/java/classes/erminej/baseCode.jar
  8. share/java/classes/erminej/colt.jar
  9. share/java/classes/erminej/commons-beanutils.jar
  10. share/java/classes/erminej/commons-cli.jar
  11. share/java/classes/erminej/commons-collections.jar
  12. share/java/classes/erminej/commons-configuration.jar
  13. share/java/classes/erminej/commons-io.jar
  14. share/java/classes/erminej/commons-lang3.jar
  15. share/java/classes/erminej/commons-logging.jar
  16. share/java/classes/erminej/commons-math3.jar
  17. share/java/classes/erminej/commons-net.jar
  18. share/java/classes/erminej/ermineJ.jar
  19. share/java/classes/erminej/forehead.jar
  20. share/java/classes/erminej/gemma-core.jar
  21. share/java/classes/erminej/gemma-gsec.jar
  22. share/java/classes/erminej/javax.activation-api.jar
  23. share/java/classes/erminej/jaxb-api.jar
  24. share/java/classes/erminej/jcl-over-slf4j.jar
  25. share/java/classes/erminej/jcommon.jar
  26. share/java/classes/erminej/jfreechart.jar
  27. share/java/classes/erminej/jsontools-core.jar
  28. share/java/classes/erminej/log4j.jar
  29. share/java/classes/erminej/mtj.jar
  30. share/java/classes/erminej/opencsv.jar
  31. share/java/classes/erminej/slf4j-api.jar
  32. share/java/classes/erminej/slf4j-log4j12.jar
  33. share/java/classes/erminej/xercesImpl.jar
  34. share/java/classes/erminej/xml-apis.jar
  35. @owner
  36. @group
  37. @mode
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Dependency lines:
  • erminej>0:biology/erminej
To install the port: cd /usr/ports/biology/erminej/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/erminej
  • pkg install erminej
PKGNAME: erminej
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
erminej
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd643.2-
FreeBSD:11:armv6--
FreeBSD:11:i3863.2-
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-3.2
FreeBSD:12:amd643.23.2
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3863.23.2
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-3.2
FreeBSD:13:amd643.23.2
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3863.23.2
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch643.2-
FreeBSD:14:amd643.2-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3863.2-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Runtime dependencies:
  1. java : java/openjdk8
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://home.pavlab.msl.ubc.ca/ermineJ/distributions/
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Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
09 Jul 2021 12:26:58
 files touched by this commit commit hash:e44f917e298a1f860fab0790aacd348cae60f74b  3.2
jwb search for other commits by this committer
biology/erminej: Analyses of gene sets, e.g. gene expression profiling

ErmineJ performs analyses of gene sets in high-throughput genomics data
such as gene expression profiling studies. A typical goal is to
determine whether particular biological pathways are "doing something
interesting" in an experiment that generates long lists of candidates.
The software is designed to be used by biologists with little or no
informatics background (but if you do, you might be interested in the
CLI or the R support).

Number of commits found: 1