| Port details on branch 2026Q3 |
- exonerate Generic tool for biological sequence alignment
- 2.4.0_2 biology
 =0      2.4.0_2Version of this port present on the latest quarterly branch. - Maintainer: alven@FreeBSD.org
- Port Added: 2026-08-19 06:18:07
- Last Update: 2026-08-19 06:14:20
- Commit Hash: c944bb75
- License: GPLv3
- WWW:
- https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate
- Description:
- Exonerate is a tool for various types of pairwise sequence comparison.
It allows us to align sequences using many alignment models including
est2genome, protein2genome, and so on.
Citation:
Slater, G. S. C. and Birney, E. (2005) Automated generation of heuristics
for biological sequence comparison. BMC Bioinformatics 6:31.
  ¦  ¦  ¦  ¦ 
- Manual pages:
-
- pkg-plist: as obtained via:
make generate-plist - USE_RC_SUBR (Service Scripts)
- no SUBR information found for this port
- Dependency lines:
-
- exonerate>0:biology/exonerate
- To install the port:
- cd /usr/ports/biology/exonerate/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/exonerate
- pkg install exonerate
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: exonerate
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1529394154
SHA256 (exonerate-2.4.0.tar.gz) = f849261dc7c97ef1f15f222e955b0d3daf994ec13c9db7766f1ac7e77baa4042
SIZE (exonerate-2.4.0.tar.gz) = 520899
No package information for this port in our database- Sometimes this happens. Not all ports have packages. Perhaps there is a build error. Check the fallout link:
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- pkgconf>=1.3.0_1 : devel/pkgconf
- Library dependencies:
-
- libglib-2.0.so : devel/glib20
- libintl.so : devel/gettext-runtime
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_exonerate
- USES:
- gnome pkgconfig
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 1
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
2.4.0_2
19 Aug 2026 06:14:20
 |
Älven (alven) |
biology/exonerate: Improve port, take maintainership
* Use https:// scheme for MASTER_SITES
* Improve COMMENT
* Pet portclippy(1) and portfmt(1)
* Sort pkg-plist
Approved by: db@, yuri@ (Mentors, implicit)
MFH: 2026Q3
(cherry picked from commit f56b7548526c1889a79deb79409a6be25a0de319) |
Number of commits found: 1
|
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