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Port details
fastdnaml Faster DNAML, makes phylogenetic trees using maximum likelihood
1.2.2_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 12 Oct 2000 09:31:14
License: GPLv2+
fastDNAml is a program derived from Joseph Felsenstein's version 3.3 DNAML
(part of his PHYLIP package). Users should consult the documentation for
DNAML before using this program.

fastDNAml is an attempt to solve the same problem as DNAML, but to do so
faster and using less memory, so that larger trees and/or more bootstrap
replicates become tractable. Much of fastDNAml is merely a recoding of the
PHYLIP 3.3 DNAML program from PASCAL to C.

WWW: http://www.life.illinois.edu/gary/programs/fastDNAml.html
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (37 items)
  1. /usr/local/share/licenses/fastdnaml-1.2.2_2/catalog.mk
  2. /usr/local/share/licenses/fastdnaml-1.2.2_2/LICENSE
  3. /usr/local/share/licenses/fastdnaml-1.2.2_2/GPLv2+
  4. bin/fastDNAml
  5. bin/fastdnaml/ae2dnaml
  6. bin/fastdnaml/bootstrap
  7. bin/fastdnaml/categories
  8. bin/fastdnaml/categories_file
  9. bin/fastdnaml/checkpoint_summary
  10. bin/fastdnaml/clean_checkpoints
  11. bin/fastdnaml/clean_jumbles
  12. bin/fastdnaml/dnaml_progress
  13. bin/fastdnaml/fastDNAml_boot
  14. bin/fastdnaml/fastDNAml_loop
  15. bin/fastdnaml/frequencies
  16. bin/fastdnaml/global
  17. bin/fastdnaml/iterate_rates
  18. bin/fastdnaml/jumble
  19. bin/fastdnaml/min_info
  20. bin/fastdnaml/n_categories
  21. bin/fastdnaml/n_files
  22. bin/fastdnaml/out.PID
  23. bin/fastdnaml/outgroup
  24. bin/fastdnaml/printdata
  25. bin/fastdnaml/quickadd
  26. bin/fastdnaml/restart
  27. bin/fastdnaml/scores
  28. bin/fastdnaml/transition
  29. bin/fastdnaml/treefile
  30. bin/fastdnaml/treefile2prolog
  31. bin/fastdnaml/trees2NEXUS
  32. bin/fastdnaml/trees2prolog
  33. bin/fastdnaml/userlengths
  34. bin/fastdnaml/usertree
  35. bin/fastdnaml/usertrees
  36. bin/fastdnaml/weights
  37. bin/fastdnaml/weights_categories
  38. Collapse this list.

To install the port: cd /usr/ports/biology/fastdnaml/ && make install clean
To add the package: pkg install fastdnaml

PKGNAME: fastdnaml

distinfo:

SHA256 (fastDNAml_1.2.2.tar.gz) = 34690ec9a8e2fe1d86bea4a7cb10f7bc47e5e4c30719e1c9451210df4f160180
SIZE (fastDNAml_1.2.2.tar.gz) = 70005

There are no ports dependent upon this port


Configuration Options
===> The following configuration options are available for fastdnaml-1.2.2_2:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

Master Sites:
  1. http://www.life.illinois.edu/gary/programs/fastDNAml/

Number of commits found: 18

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
12 Jan 2016 16:20:32
Original commit files touched by this commit  1.2.2_2
Revision:405891
amdmi3 search for other commits by this committer
Convert LICENSE= "GPLxx # or later" to "GPLxx+"

Approved by:	portmgr blanket
20 Oct 2014 07:10:48
Original commit files touched by this commit  1.2.2_2
Revision:371237
bapt search for other commits by this committer
Cleanup plist
16 Feb 2014 11:32:43
Original commit files touched by this commit  1.2.2_2
Revision:344535
ehaupt search for other commits by this committer
Support staging
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.2.2_2
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
19 Jun 2013 13:35:55
Original commit files touched by this commit  1.2.2_2
Revision:321249
bsam search for other commits by this committer
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. remove LICENSE_FILE for a standard license (GPLv2);
. trim Makefile headers.
26 Aug 2011 00:24:49
Original commit files touched by this commit  1.2.2_2
wen search for other commits by this committer
- Fix MASTER_SITES and WWW: line
- Add LICENSE
- Support CC/CFLAGS properly

PR:             ports/160083
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
02 Aug 2011 05:36:33
Original commit files touched by this commit  1.2.2_1
bapt search for other commits by this committer
Deprecate port with no more public distfiles
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.2.2_1
miwi search for other commits by this committer
- Get Rid MD5 support
24 Nov 2005 00:04:00
Original commit files touched by this commit  1.2.2_1
pav search for other commits by this committer
- Add SHA256
04 Feb 2004 05:21:48
Original commit files touched by this commit  1.2.2_1
marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
27 Jan 2004 20:51:07
Original commit files touched by this commit  1.2.2
trevor search for other commits by this committer
Add SIZE.
03 Nov 2003 21:01:28
Original commit files touched by this commit  1.2.2
linimon search for other commits by this committer
Pet portlint.
03 Nov 2003 20:44:32
Original commit files touched by this commit  1.2.2
edwin search for other commits by this committer
Date: Tue, 04 Nov 2003 00:42:55 +0900
From: Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
Subject: Re: question about FreeBSD ports you maintain

Briefly, I have no time for maintaining ports.
So I wish to leave the maintainer position of these ports:

biology/fastdnaml
textproc/wv

Thanks you for maintaining the FreeBSD system.

                                        Best regards,
                                        Motomichi Matsuzaki
22 Oct 2003 09:29:55
Original commit files touched by this commit  1.2.2
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
21 Feb 2003 11:01:38
Original commit files touched by this commit  1.2.2
knu search for other commits by this committer
De-pkg-comment.
08 Jul 2001 19:15:34
Original commit files touched by this commit
ijliao search for other commits by this committer
Add NOPORTDOCS support to pkg-plist    
24 Oct 2000 11:33:47
Original commit files touched by this commit
jeh search for other commits by this committer
gmake is needed    
12 Oct 2000 13:31:14
Original commit files touched by this commit
jeh search for other commits by this committer
Initial import of fastDNAml Version 1.2.2    

Number of commits found: 18

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