| Port details |
- fastdnaml Faster DNAML, makes phylogenetic trees using maximum likelihood
- 1.2.2_2 biology
 =2      1.2.2_2Version of this port present on the latest quarterly branch. - There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2000-10-12 09:31:14
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: GPLv2+
- WWW:
- https://www.life.illinois.edu/gary/programs/fastDNAml.html
- Description:
- fastDNAml is a program derived from Joseph Felsenstein's version 3.3 DNAML
(part of his PHYLIP package). Users should consult the documentation for
DNAML before using this program.
fastDNAml is an attempt to solve the same problem as DNAML, but to do so
faster and using less memory, so that larger trees and/or more bootstrap
replicates become tractable. Much of fastDNAml is merely a recoding of the
PHYLIP 3.3 DNAML program from PASCAL to C.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- fastdnaml>0:biology/fastdnaml
- To install the port:
- cd /usr/ports/biology/fastdnaml/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/fastdnaml
- pkg install fastdnaml
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: fastdnaml
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (fastDNAml_1.2.2.tar.gz) = 34690ec9a8e2fe1d86bea4a7cb10f7bc47e5e4c30719e1c9451210df4f160180
SIZE (fastDNAml_1.2.2.tar.gz) = 70005
Packages (timestamps in pop-ups are UTC):
- This port has no dependencies.
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for fastdnaml-1.2.2_2:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- biology_fastdnaml
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
07 Sep 2022 21:58:51
 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.2.2_2
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.2.2_2
20 Jul 2022 14:20:57
|
Tobias C. Berner (tcberner) |
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above ) |
1.2.2_2
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.2.2_2
12 Jan 2016 16:20:32
 |
amdmi3 |
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
Approved by: portmgr blanket |
1.2.2_2
20 Oct 2014 07:10:48
|
bapt |
Cleanup plist |
1.2.2_2
16 Feb 2014 11:32:43
|
ehaupt |
Support staging |
1.2.2_2
20 Sep 2013 15:55:44
|
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology) |
1.2.2_2
19 Jun 2013 13:35:55
|
bsam |
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. remove LICENSE_FILE for a standard license (GPLv2);
. trim Makefile headers. |
1.2.2_2
26 Aug 2011 00:24:49
|
wen |
- Fix MASTER_SITES and WWW: line
- Add LICENSE
- Support CC/CFLAGS properly
PR: ports/160083
Submitted by: KATO Tsuguru <tkato432@yahoo.com> |
1.2.2_1
02 Aug 2011 05:36:33
|
bapt |
Deprecate port with no more public distfiles |
1.2.2_1
19 Mar 2011 12:38:54
|
miwi |
- Get Rid MD5 support |
1.2.2_1
24 Nov 2005 00:04:00
|
pav |
- Add SHA256 |
1.2.2_1
04 Feb 2004 05:21:48
|
marcus |
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
(Part 2) |
1.2.2
27 Jan 2004 20:51:07
|
trevor |
Add SIZE. |
1.2.2
03 Nov 2003 21:01:28
|
linimon |
Pet portlint. |
1.2.2
03 Nov 2003 20:44:32
|
edwin |
Date: Tue, 04 Nov 2003 00:42:55 +0900
From: Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
Subject: Re: question about FreeBSD ports you maintain
Briefly, I have no time for maintaining ports.
So I wish to leave the maintainer position of these ports:
biology/fastdnaml
textproc/wv
Thanks you for maintaining the FreeBSD system.
Best regards,
Motomichi Matsuzaki |
1.2.2
22 Oct 2003 09:29:55
|
osa |
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.
Submitted by: Oleg Karachevtsev <ok@etrust.ru>
A part of PR: 57992 |
1.2.2
21 Feb 2003 11:01:38
|
knu |
De-pkg-comment. |
08 Jul 2001 19:15:34
|
ijliao |
Add NOPORTDOCS support to pkg-plist |
24 Oct 2000 11:33:47
|
jeh |
gmake is needed |
12 Oct 2000 13:31:14
|
jeh |
Initial import of fastDNAml Version 1.2.2 |
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