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Port details
fasttree Approximately-maximum-likelihood phylogenetic trees from alignments
2.1.10_5 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.1.10_5Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2015-09-25 18:34:35
Last Update: 2021-06-15 08:41:19
Commit Hash: 5240cba
License: GPLv2+
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/FastTree
  2. /usr/local/share/licenses/FastTree-2.1.10_5/catalog.mk
  3. /usr/local/share/licenses/FastTree-2.1.10_5/LICENSE
  4. /usr/local/share/licenses/FastTree-2.1.10_5/GPLv2+
Collapse this list.
Dependency lines:
  • FastTree>0:biology/fasttree
To install the port: cd /usr/ports/biology/fasttree/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/fasttree
  • pkg install FastTree
PKGNAME: FastTree
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
FastTree
ABIlatestquarterly
FreeBSD:11:aarch642.1.10_22.1.10_4
FreeBSD:11:amd642.1.10_52.1.10_5
FreeBSD:11:armv62.1.8-
FreeBSD:11:i3862.1.10_52.1.10_5
FreeBSD:11:mips--
FreeBSD:11:mips642.1.82.1.10_4
FreeBSD:12:aarch642.1.10_22.1.10_5
FreeBSD:12:amd642.1.10_52.1.10_5
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3862.1.10_52.1.10_5
FreeBSD:12:mips--
FreeBSD:12:mips642.1.10_22.1.10_4
FreeBSD:12:powerpc64-2.1.10_5
FreeBSD:13:aarch642.1.10_52.1.10_5
FreeBSD:13:amd642.1.10_52.1.10_5
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3862.1.10_52.1.10_5
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc642.1.10_42.1.10_5
FreeBSD:14:aarch642.1.10_5-
FreeBSD:14:amd642.1.10_5-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3862.1.10_5-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc642.1.10_5-
 

There are no ports dependent upon this port

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://www.microbesonline.org/fasttree/
Collapse this list.

Number of commits found: 16

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
15 Jun 2021 08:41:19
 files touched by this commit commit hash:5240cba2437ed1f3f59eab2052420b13a448b621  2.1.10_5
pkubaj search for other commits by this committer
biology/fasttree: fix build on armv7

Same issue as with powerpc.
10 Jun 2021 12:25:31
 files touched by this commit commit hash:0a618235c76d379d40ae3087e19a8de0068c2221  2.1.10_5
pkubaj search for other commits by this committer
biology/fasttree: fix build on powerpc

LLVM on powerpc doesn't have libomp.
Same issue happens on armv6 and armv7 but someone has to test whether doing the
same for those architectures is enough.
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  2.1.10_5
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  2.1.10_5
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
11 Jan 2021 16:58:13
Original commit files touched by this commit Revision:561229  2.1.10_5
jwb search for other commits by this committer
biology/fasttree: Drop dependency on gcc

Simply remove compiler:openmp
Builds with base compiler on amd64, i386, and powerpc64 12.x-RELEASE

PR:             port/247753, ports/252379
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  2.1.10_4
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  2.1.10_3
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
29 Jul 2018 22:18:46
Original commit files touched by this commit Revision:475857  2.1.10_2
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
18 Mar 2018 13:38:23
Original commit files touched by this commit Revision:464907  2.1.10_1
linimon search for other commits by this committer
Mark the latest version broken on armvX.  Note: 2.1.8.3 built ok.

Approved by:	portmgr (tier-2 blanket)
10 Mar 2018 17:46:06
Original commit files touched by this commit Revision:464084  2.1.10_1
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
05 Dec 2017 03:03:38
Original commit files touched by this commit Revision:455562  2.1.10
jwb search for other commits by this committer
biology/fasttree: update to version 2.1.10

Approved by:	jrm
Differential Revision:	https://reviews.freebsd.org/D8187
10 Sep 2017 20:55:39
Original commit files touched by this commit Revision:449591  2.1.8_3
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
01 Apr 2017 15:23:32
Original commit files touched by this commit Revision:437439  2.1.8_2
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
20 Nov 2016 09:38:09
Original commit files touched by this commit Revision:426566  2.1.8_1
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
11 Dec 2015 08:48:57
Original commit files touched by this commit Revision:403506  2.1.8
miwi search for other commits by this committer
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
25 Sep 2015 18:34:29
Original commit files touched by this commit Revision:397848  2.1.8
rm search for other commits by this committer
FastTree infers approximately-maximum-likelihood phylogenetic trees from
alignments of nucleotide or protein sequences. FastTree can handle alignments
with up to a million of sequences in a reasonable amount of time and memory.

WWW: http://www.microbesonline.org/fasttree/

PR:		203295
Submitted by:	Jason Bacon <jwbacon@tds.net>

Number of commits found: 16