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Port details
fasttree Approximately-maximum-likelihood phylogenetic trees from alignments
2.1.10 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 25 Sep 2015 18:34:35
License: GPLv2+
FastTree infers approximately-maximum-likelihood phylogenetic trees from
alignments of nucleotide or protein sequences. FastTree can handle alignments
with up to a million of sequences in a reasonable amount of time and memory.

WWW: http://www.microbesonline.org/fasttree/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (4 items)
  1. bin/FastTree
  2. /usr/local/share/licenses/FastTree-2.1.10/catalog.mk
  3. /usr/local/share/licenses/FastTree-2.1.10/LICENSE
  4. /usr/local/share/licenses/FastTree-2.1.10/GPLv2+
  5. Collapse this list.

To install the port: cd /usr/ports/biology/fasttree/ && make install clean
To add the package: pkg install FastTree

PKGNAME: FastTree

distinfo:

TIMESTAMP = 1512317739
SHA256 (FastTree-2.1.10.c) = 54cb89fc1728a974a59eae7a7ee6309cdd3cddda9a4c55b700a71219fc6e926d
SIZE (FastTree-2.1.10.c) = 390916

There are no ports dependent upon this port


Configuration Options
     No options to configure

USES:
compiler:openmp

Master Sites:
  1. http://www.microbesonline.org/fasttree/

Number of commits found: 6

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
05 Dec 2017 03:03:38
Original commit files touched by this commit  2.1.10
Revision:455562
jwb search for other commits by this committer
biology/fasttree: update to version 2.1.10

Approved by:	jrm
Differential Revision:	https://reviews.freebsd.org/D8187
10 Sep 2017 20:55:39
Original commit files touched by this commit  2.1.8_3
Revision:449591
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
01 Apr 2017 15:23:32
Original commit files touched by this commit  2.1.8_2
Revision:437439
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
20 Nov 2016 09:38:09
Original commit files touched by this commit  2.1.8_1
Revision:426566
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
11 Dec 2015 08:48:57
Original commit files touched by this commit  2.1.8
Revision:403506
miwi search for other commits by this committer
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
25 Sep 2015 18:34:29
Original commit files touched by this commit  2.1.8
Revision:397848
rm search for other commits by this committer
FastTree infers approximately-maximum-likelihood phylogenetic trees from
alignments of nucleotide or protein sequences. FastTree can handle alignments
with up to a million of sequences in a reasonable amount of time and memory.

WWW: http://www.microbesonline.org/fasttree/

PR:		203295
Submitted by:	Jason Bacon <jwbacon@tds.net>

Number of commits found: 6

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