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Port details
fasttree Approximately-maximum-likelihood phylogenetic trees from alignments
2.1.10_5 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2015-09-25 18:34:35
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: GPLv2+
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/FastTree
  2. /usr/local/share/licenses/FastTree-2.1.10_5/catalog.mk
  3. /usr/local/share/licenses/FastTree-2.1.10_5/LICENSE
  4. /usr/local/share/licenses/FastTree-2.1.10_5/GPLv2+
Collapse this list.
Dependency lines:
  • FastTree>0:biology/fasttree
To install the port:
cd /usr/ports/biology/fasttree/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/fasttree
  • pkg install FastTree
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: FastTree
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
FastTree
ABIlatestquarterly
FreeBSD:11:aarch642.1.10_22.1.10_4
FreeBSD:11:amd642.1.10_52.1.10_5
FreeBSD:11:armv62.1.8pkg-fallout
FreeBSD:11:i3862.1.10_52.1.10_5
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips642.1.82.1.10_4
FreeBSD:12:aarch642.1.10_22.1.10_5
FreeBSD:12:amd642.1.10_52.1.10_5
FreeBSD:12:armv6pkg-falloutpkg-fallout
FreeBSD:12:armv7pkg-falloutpkg-fallout
FreeBSD:12:i3862.1.10_52.1.10_5
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips642.1.10_22.1.10_4
FreeBSD:12:powerpc64pkg-fallout2.1.10_5
FreeBSD:13:aarch642.1.10_52.1.10_5
FreeBSD:13:amd642.1.10_52.1.10_5
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv72.1.10_52.1.10_5
FreeBSD:13:i3862.1.10_52.1.10_5
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc642.1.10_42.1.10_5
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch642.1.10_5pkg-fallout
FreeBSD:14:amd642.1.10_5pkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv72.1.10_5pkg-fallout
FreeBSD:14:i3862.1.10_5pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc642.1.10_5pkg-fallout
FreeBSD:14:riscv642.1.10_5pkg-fallout
 

This port has no dependencies.
There are no ports dependent upon this port

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message

Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://www.microbesonline.org/fasttree/
Collapse this list.

Number of commits found: 19

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.1.10_5
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.1.10_5
27 Apr 2022 13:22:02
commit hash:cf150ef9e2f6547b609c43a05365b66d8f5f5104commit hash:cf150ef9e2f6547b609c43a05365b66d8f5f5104commit hash:cf150ef9e2f6547b609c43a05365b66d8f5f5104commit hash:cf150ef9e2f6547b609c43a05365b66d8f5f5104 files touched by this commit
Piotr Kubaj (pkubaj) search for other commits by this committer
biology/fasttree: check for omp.h on all architectures
2.1.10_5
15 Jun 2021 08:41:19
commit hash:5240cba2437ed1f3f59eab2052420b13a448b621commit hash:5240cba2437ed1f3f59eab2052420b13a448b621commit hash:5240cba2437ed1f3f59eab2052420b13a448b621commit hash:5240cba2437ed1f3f59eab2052420b13a448b621 files touched by this commit
Piotr Kubaj (pkubaj) search for other commits by this committer
biology/fasttree: fix build on armv7

Same issue as with powerpc.
2.1.10_5
10 Jun 2021 12:25:31
commit hash:0a618235c76d379d40ae3087e19a8de0068c2221commit hash:0a618235c76d379d40ae3087e19a8de0068c2221commit hash:0a618235c76d379d40ae3087e19a8de0068c2221commit hash:0a618235c76d379d40ae3087e19a8de0068c2221 files touched by this commit
Piotr Kubaj (pkubaj) search for other commits by this committer
biology/fasttree: fix build on powerpc

LLVM on powerpc doesn't have libomp.
Same issue happens on armv6 and armv7 but someone has to test whether doing the
same for those architectures is enough.
2.1.10_5
07 Apr 2021 08:09:01
commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
2.1.10_5
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.1.10_5
11 Jan 2021 16:58:13
Revision:561229Original commit files touched by this commit
jwb search for other commits by this committer
biology/fasttree: Drop dependency on gcc

Simply remove compiler:openmp
Builds with base compiler on amd64, i386, and powerpc64 12.x-RELEASE

PR:             port/247753, ports/252379
2.1.10_4
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
2.1.10_3
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
2.1.10_2
29 Jul 2018 22:18:46
Revision:475857Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
2.1.10_1
18 Mar 2018 13:38:23
Revision:464907Original commit files touched by this commit
linimon search for other commits by this committer
Mark the latest version broken on armvX.  Note: 2.1.8.3 built ok.

Approved by:	portmgr (tier-2 blanket)
2.1.10_1
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
2.1.10
05 Dec 2017 03:03:38
Revision:455562Original commit files touched by this commit
jwb search for other commits by this committer
biology/fasttree: update to version 2.1.10

Approved by:	jrm
Differential Revision:	https://reviews.freebsd.org/D8187
2.1.8_3
10 Sep 2017 20:55:39
Revision:449591Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
2.1.8_2
01 Apr 2017 15:23:32
Revision:437439Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
2.1.8_1
20 Nov 2016 09:38:09
Revision:426566Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
2.1.8
11 Dec 2015 08:48:57
Revision:403506Original commit files touched by this commit
miwi search for other commits by this committer
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
2.1.8
25 Sep 2015 18:34:29
Revision:397848Original commit files touched by this commit
rm search for other commits by this committer
FastTree infers approximately-maximum-likelihood phylogenetic trees from
alignments of nucleotide or protein sequences. FastTree can handle alignments
with up to a million of sequences in a reasonable amount of time and memory.

WWW: http://www.microbesonline.org/fasttree/

PR:		203295
Submitted by:	Jason Bacon <jwbacon@tds.net>

Number of commits found: 19