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Port details
flash Fast Length Adjustment of SHort reads
1.2.11 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.2.11Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-08-23 17:30:09
Last Update: 2021-08-23 17:26:47
Commit Hash: 615c521
License: GPLv3
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
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  1. bin/flash
  2. /usr/local/share/licenses/flash-1.2.11/catalog.mk
  3. /usr/local/share/licenses/flash-1.2.11/LICENSE
  4. /usr/local/share/licenses/flash-1.2.11/GPLv3
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Dependency lines:
  • flash>0:biology/flash
To install the port: cd /usr/ports/biology/flash/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/flash
  • pkg install flash
PKGNAME: flash
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
flash
ABIlatestquarterly
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FreeBSD:11:amd641.2.11-
FreeBSD:11:armv6--
FreeBSD:11:i3861.2.11-
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-1.2.11
FreeBSD:12:amd641.2.111.2.11
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3861.2.111.2.11
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-1.2.11
FreeBSD:13:amd641.2.111.2.11
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3861.2.111.2.11
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch641.2.11-
FreeBSD:14:amd641.2.11-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3861.2.11-
FreeBSD:14:mips--
FreeBSD:14:mips641.2.11-
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. http://ccb.jhu.edu/software/FLASH/
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Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
23 Aug 2021 17:26:47
 files touched by this commit commit hash:615c521bb3a0eafdb69e45fc8ddb2ca7c8c286b3  1.2.11
jwb search for other commits by this committer
biology/flash: Fast Length Adjustment of SHort reads

FLASH (Fast Length Adjustment of SHort reads) is a very fast and
accurate software tool to merge paired-end reads from next-generation
sequencing experiments. FLASH is designed to merge pairs of reads when
the original DNA fragments are shorter than twice the length of reads.
The resulting longer reads can significantly improve genome assemblies.
They can also improve transcriptome assembly when FLASH is used to
merge RNA-seq data.

Number of commits found: 1