| Port details |
- garlic Molecular viewer, editor, and visualization program
- 1.6_1 biology
 =2      1.6_1Version of this port present on the latest quarterly branch. - There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2003-07-28 06:41:18
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: not specified in port
- WWW:
- http://www.zucic.org/garlic/
- Description:
- Free, open source molecular viewer and editor for
protein structure, DNA structure, PDB, molecular rendering,
biological macromolecule.
Atoms may be drawn as spheres of different sizes.
Bonds may be drawn as cylindrical sticks, conical sticks or
as curved surfaces.
Five types of slab are available: planar, spherical,
semi-spherical, cylindrical and semi-cylindrical.
The slab position and thickness are visible in a small window.
Atomic bonds as well as atoms are treated as independent drawable objects.
and more.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/garlic/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/garlic
- pkg install garlic
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: garlic
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (garlic-1.6.tar.gz) = c99da419cb022d7120074baeaf922b3c66223fb7e78ef932e5a254fd6e0a0c8b
SIZE (garlic-1.6.tar.gz) = 559663
SHA256 (garlic-1.6-doc.tar.gz) = 747dcea06f3f771941a4d506c744212bfdc6f89053faa5bd1f14bc9274f3f2aa
SIZE (garlic-1.6-doc.tar.gz) = 1210063
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- x11.pc : x11/libX11
- Runtime dependencies:
-
- x11.pc : x11/libX11
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for garlic-1.6_1:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
OPTIMIZED_CFLAGS=off: Use extra compiler optimizations
===> Use 'make config' to modify these settings
- Options name:
- biology_garlic
- USES:
- gmake xorg
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
07 Sep 2022 21:58:51
 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.6_1
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.6_1
20 Jul 2022 14:20:57
|
Tobias C. Berner (tcberner) |
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above ) |
1.6_1
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.6_1
04 Nov 2019 21:08:20
 |
zeising |
Add USES=xorg USES=gl, ports categories b
Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories
starting with 'b'. |
1.6_1
11 Mar 2018 11:20:43
|
rene |
Return maho@'s ports to the pool after his commit bit expired.
With hat: portmgr |
1.6_1
20 Oct 2014 07:10:48
|
bapt |
Cleanup plist |
1.6_1
17 Jul 2014 10:13:06
|
marino |
biology/garlic: Stage properly to unbreak
The main problem was the WRKDIR is not within STAGEDIR. Fix this while
moving all the directory creation steps into one. While here
set TAR to use switches as outlined in its man page.
Also, the permission setting in stagedir is not necessary, so it's simply
been removed. |
1.6
05 Jul 2014 00:15:40
|
adamw |
Missed a NOPORTDOCS. |
1.6
04 Jul 2014 23:46:53
|
adamw |
Remove NOPORTDOCS and NOPORTEXAMPLES from unstaged ports. Stage a couple while
we're here. Remove any other references to NOPORT*.
Approved by: portmgr (blanket for modernization) |
1.6
13 Mar 2014 07:41:34
|
miwi |
- Convert USE_GMAKE to USES |
1.6
20 Sep 2013 15:55:44
|
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology) |
1.6
25 Jul 2012 06:32:08
|
cs |
Fix typos in COMMENT |
1.6
11 May 2011 05:55:27
|
maho |
Update to 1.6. Web site has been moved. |
1.5_2
19 Mar 2011 12:38:54
|
miwi |
- Get Rid MD5 support |
1.5_2
19 Apr 2008 17:56:05
 |
miwi |
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+
Thanks to all Helpers:
Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
ehaupt, nox, itetcu, flz, pav
PR: 116263
Tested on: pointyhat
Approved by: portmgr (pav) |
1.5_2
24 Mar 2008 13:03:55
|
miwi |
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION
Approved by: portmgr (xorg cleanup) |
1.5_1
19 May 2007 20:32:57
|
flz |
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}. |
1.5
03 May 2006 23:26:35
|
edwin |
Remove USE_REINPLACE from all categories starting with B |
1.5
15 Mar 2006 08:10:49
|
maho |
Update to 1.5
Submitted by: distfile survey by kris, fenner |
1.4_2
22 Jan 2006 08:20:34
|
edwin |
SHA256ify
Approved by: krion@ |
1.4_2
12 Apr 2005 03:26:57
|
obrien |
At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE. |
1.4_2
11 Apr 2005 08:04:41
|
obrien |
Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'. |
1.4_2
06 May 2004 19:49:54
|
maho |
Make portlint happy by replacing space to tab
PR: 65409
Submitted by: trevor |
1.4_2
18 Mar 2004 04:57:07
|
maho |
1) Silent version up without changing the version number
very minor change in README
2) change WWW: section at pkg-descr
3) SIZEify
Submitted by: kris via bento |
1.4_2
22 Feb 2004 00:42:32
|
kris |
BROKEN: Checksum mismatch |
1.4_2
04 Feb 2004 05:21:48
|
marcus |
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
(Part 2) |
1.4_1
28 Dec 2003 08:02:14
|
maho |
silent updates of archives:
a) program: Draw the hydrophobicity function F5
b) documentation: add very minor description not
related FreeBSD.
1) bump portrevision
2) several clean ups for Makefile |
1.4
22 Oct 2003 09:29:55
|
osa |
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.
Submitted by: Oleg Karachevtsev <ok@etrust.ru>
A part of PR: 57992 |
1.4
01 Sep 2003 22:00:01
|
maho |
Silent changes to the port distfile which *not* have significant
functional differences.
just changing very minor change of documatation, adding very minor
functionality and some cleanup for coding
Submitted by: bento's log |
1.4
31 Jul 2003 08:06:09
|
maho |
Add USE_XLIB=yes to compile
Submitted by: kris via bento |
1.4
28 Jul 2003 06:38:37
|
maho |
A new port garlic, free molecular viewer and editor, free molecular
visualization program, protein structure, DNA structure, PDB,
molecular rendering, biological macromolecule. |
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