notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

/commits.php is going away

I'm proposing to take /commits.php away - it mainly duplicates the home page. Details in this GitHub issue.
Port details
gcta Genome-wide Complex Trait Analysis
1.26.0_3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.26.0_3Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-04-15 15:22:11
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
License: GPLv3
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/gcta
  2. /usr/local/share/licenses/gcta-1.26.0_3/catalog.mk
  3. /usr/local/share/licenses/gcta-1.26.0_3/LICENSE
  4. /usr/local/share/licenses/gcta-1.26.0_3/GPLv3
Collapse this list.
Dependency lines:
  • gcta>0:biology/gcta
To install the port: cd /usr/ports/biology/gcta/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/gcta
  • pkg install gcta
PKGNAME: gcta
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
gcta
ABIlatestquarterly
FreeBSD:11:aarch64-1.26.0_1
FreeBSD:11:amd641.26.0_31.26.0_3
FreeBSD:11:armv6--
FreeBSD:11:i3861.26.0_31.26.0_3
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-1.26.0_3
FreeBSD:12:amd641.26.0_31.26.0_3
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3861.26.0_31.26.0_3
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-1.26.0_3
FreeBSD:13:aarch641.26.0_31.26.0_3
FreeBSD:13:amd641.26.0_31.26.0_3
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3861.26.0_31.26.0_3
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch641.26.0_3-
FreeBSD:14:amd641.26.0_3-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3861.26.0_3-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc641.26.0_3-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. eigen3.pc : math/eigen3
  2. gmake>=4.3 : devel/gmake
Library dependencies:
  1. libopenblas.so : math/openblas
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://cnsgenomics.com/software/gcta/pre_gcta/
Collapse this list.

Number of commits found: 7

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  1.26.0_3
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.26.0_3
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
11 Jan 2021 17:09:38
Original commit files touched by this commit Revision:561231  1.26.0_3
jwb search for other commits by this committer
biology/gcta: Drop dependency on gcc

Replace compiler:openmp with compiler:c++11-lang
Clang build also requires localbase:ldflags
Build tested on amd64, i386 and powerpc64 12.x-RELEASE

PR:             port/247753, ports/252379
12 Dec 2020 17:04:37
Original commit files touched by this commit Revision:557839  1.26.0_2
thierry search for other commits by this committer
- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run
08 Nov 2020 14:31:00
Original commit files touched by this commit Revision:554467  1.26.0_1
jwb search for other commits by this committer
biology/gcta: Switch eigen3 dep to USES framework

PR:             ports/250949
Reported by:    lbartoletti
06 May 2020 16:11:15
Original commit files touched by this commit Revision:534185  1.26.0_1
yuri search for other commits by this committer
Bump 46 ports depending on math/openblas because the after the recent
math/openblas update the library name changed in openblas.
15 Apr 2020 15:22:04
Original commit files touched by this commit Revision:531770  1.26.0
jwb search for other commits by this committer
biology/gcta: Genome-wide Complex Trait Analysis

GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate
the proportion of phenotypic variance explained by genome- or chromosome-wide
SNPs for complex traits (the GREML method), and has subsequently extended for
many other analyses to better understand the genetic architecture of complex
traits.

Number of commits found: 7