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Port details
graphlan High-quality circular representations of taxonomic, phylogenetic trees
1.1.3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 1.1.3Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Uses deprecated version of python
Expiration Date EXPIRATION DATE: 2020-08-15
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-02-03 20:13:43
Last Update: 2020-02-23 15:25:53
SVN Revision: 526925
License: MIT
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (70 items)
  1. /usr/local/share/licenses/graphlan-1.1.3/catalog.mk
  2. /usr/local/share/licenses/graphlan-1.1.3/LICENSE
  3. /usr/local/share/licenses/graphlan-1.1.3/MIT
  4. bin/graphlan
  5. bin/graphlan_annotate
  6. share/graphlan/export2graphlan/.hg_archival.txt
  7. share/graphlan/export2graphlan/.hgsub
  8. share/graphlan/export2graphlan/.hgsubstate
  9. share/graphlan/export2graphlan/README.md
  10. share/graphlan/export2graphlan/export2graphlan.py
  11. share/graphlan/export2graphlan/license.txt
  12. share/graphlan/export2graphlan/todo-list.txt
  13. share/graphlan/graphlan.py
  14. share/graphlan/graphlan_annotate.py
  15. share/graphlan/pyphlan/.hg_archival.txt
  16. share/graphlan/pyphlan/__init__.py
  17. share/graphlan/pyphlan/bo6_screen.py
  18. share/graphlan/pyphlan/choco_postprocess_euks.py
  19. share/graphlan/pyphlan/choco_postprocess_viruses.py
  20. share/graphlan/pyphlan/choco_profile.py
  21. share/graphlan/pyphlan/choco_summary.py
  22. share/graphlan/pyphlan/conv_cg2cgs.py
  23. share/graphlan/pyphlan/conv_cg2mg.py
  24. share/graphlan/pyphlan/conv_ctxt2coretxt.py
  25. share/graphlan/pyphlan/conv_ctxt2mat.py
  26. share/graphlan/pyphlan/conv_ctxt2rxl.py
  27. share/graphlan/pyphlan/conv_ctxt2ttxt.py
  28. share/graphlan/pyphlan/conv_ctxt2txt.py
  29. share/graphlan/pyphlan/conv_fna2rxl.py
  30. share/graphlan/pyphlan/conv_t2g_2_g2t.py
  31. share/graphlan/pyphlan/conv_tid2tax.py
  32. share/graphlan/pyphlan/conv_txt2ls.py
  33. share/graphlan/pyphlan/conv_uc2txt.py
  34. share/graphlan/pyphlan/fna_exact_matches.py
  35. share/graphlan/pyphlan/fna_extract_from_bo6.py
  36. share/graphlan/pyphlan/fna_extract_from_primersearch.py
  37. share/graphlan/pyphlan/fna_extract_with_primers.py
  38. share/graphlan/pyphlan/fna_g2r.py
  39. share/graphlan/pyphlan/fna_len.py
  40. share/graphlan/pyphlan/fna_revcomp.py
  41. share/graphlan/pyphlan/fna_sss.py
  42. share/graphlan/pyphlan/fna_t2g.py
  43. share/graphlan/pyphlan/libsvm_cv.py
  44. share/graphlan/pyphlan/license.txt
  45. share/graphlan/pyphlan/merg_ctxt.py
  46. share/graphlan/pyphlan/mlst_table2fna.py
  47. share/graphlan/pyphlan/msg.py
  48. share/graphlan/pyphlan/pyphlan.py
  49. share/graphlan/pyphlan/tab.py
  50. share/graphlan/pyphlan/tab.pyc
  51. share/graphlan/pyphlan/tab_sel_cols.py
  52. share/graphlan/pyphlan/tab_sub.py
  53. share/graphlan/pyphlan/tree_cores.py
  54. share/graphlan/pyphlan/tree_get_leaves.py
  55. share/graphlan/pyphlan/tree_get_subtrees.py
  56. share/graphlan/pyphlan/tree_markers.py
  57. share/graphlan/pyphlan/tree_pairwisedists.py
  58. share/graphlan/pyphlan/tree_precision.py
  59. share/graphlan/pyphlan/tree_prune.py
  60. share/graphlan/pyphlan/tree_recall.py
  61. share/graphlan/pyphlan/tree_rename.py
  62. share/graphlan/pyphlan/tree_reroot.py
  63. share/graphlan/pyphlan/tree_select_markers.py
  64. share/graphlan/pyphlan/tree_subtree.py
  65. share/graphlan/pyphlan/util_argparse.py
  66. share/graphlan/pyphlan/utils.py
  67. share/graphlan/readme.txt
  68. share/graphlan/src/__init__.py
  69. share/graphlan/src/graphlan_lib.py
  70. share/graphlan/src/pyphlan.py
Collapse this list.
Dependency lines:
  • graphlan>0:biology/graphlan
To install the port: cd /usr/ports/biology/graphlan/ && make install clean
To add the package: pkg install graphlan
PKGNAME: graphlan
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. python2.7 : lang/python27
Runtime dependencies:
  1. python2.7 : lang/python27
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://bitbucket.org/nsegata/graphlan/get/66ec7cfce81e.tar.gz?dummy=/

Number of commits found: 2

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
23 Feb 2020 15:25:53
Original commit files touched by this commit  1.1.3
Revision:526925
antoine search for other commits by this committer
Deprecate a few ports

With hat:	portmgr
03 Feb 2019 20:13:26
Original commit files touched by this commit  1.1.3
Revision:492071
yuri search for other commits by this committer
New port: biology/graphlan: High-quality circular representations of taxonomic,
phylogenetic trees

Number of commits found: 2

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