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Port details
graphlan High-quality circular representations of taxonomic, phylogenetic trees
1.1.3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-02-03 20:13:43
Last Update: 2019-02-03 20:13:26
SVN Revision: 492071
License: MIT
GraPhlAn is a software tool for producing high-quality circular representations
of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative,
informative, and publication-ready representations of phylogenetically- and
taxonomically-driven investigation.

WWW: https://bitbucket.org/nsegata/graphlan/wiki/Home
SVNWeb : Homepage
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (70 items)
  1. /usr/local/share/licenses/graphlan-1.1.3/catalog.mk
  2. /usr/local/share/licenses/graphlan-1.1.3/LICENSE
  3. /usr/local/share/licenses/graphlan-1.1.3/MIT
  4. bin/graphlan
  5. bin/graphlan_annotate
  6. share/graphlan/export2graphlan/.hg_archival.txt
  7. share/graphlan/export2graphlan/.hgsub
  8. share/graphlan/export2graphlan/.hgsubstate
  9. share/graphlan/export2graphlan/README.md
  10. share/graphlan/export2graphlan/export2graphlan.py
  11. share/graphlan/export2graphlan/license.txt
  12. share/graphlan/export2graphlan/todo-list.txt
  13. share/graphlan/graphlan.py
  14. share/graphlan/graphlan_annotate.py
  15. share/graphlan/pyphlan/.hg_archival.txt
  16. share/graphlan/pyphlan/__init__.py
  17. share/graphlan/pyphlan/bo6_screen.py
  18. share/graphlan/pyphlan/choco_postprocess_euks.py
  19. share/graphlan/pyphlan/choco_postprocess_viruses.py
  20. share/graphlan/pyphlan/choco_profile.py
  21. share/graphlan/pyphlan/choco_summary.py
  22. share/graphlan/pyphlan/conv_cg2cgs.py
  23. share/graphlan/pyphlan/conv_cg2mg.py
  24. share/graphlan/pyphlan/conv_ctxt2coretxt.py
  25. share/graphlan/pyphlan/conv_ctxt2mat.py
  26. share/graphlan/pyphlan/conv_ctxt2rxl.py
  27. share/graphlan/pyphlan/conv_ctxt2ttxt.py
  28. share/graphlan/pyphlan/conv_ctxt2txt.py
  29. share/graphlan/pyphlan/conv_fna2rxl.py
  30. share/graphlan/pyphlan/conv_t2g_2_g2t.py
  31. share/graphlan/pyphlan/conv_tid2tax.py
  32. share/graphlan/pyphlan/conv_txt2ls.py
  33. share/graphlan/pyphlan/conv_uc2txt.py
  34. share/graphlan/pyphlan/fna_exact_matches.py
  35. share/graphlan/pyphlan/fna_extract_from_bo6.py
  36. share/graphlan/pyphlan/fna_extract_from_primersearch.py
  37. share/graphlan/pyphlan/fna_extract_with_primers.py
  38. share/graphlan/pyphlan/fna_g2r.py
  39. share/graphlan/pyphlan/fna_len.py
  40. share/graphlan/pyphlan/fna_revcomp.py
  41. share/graphlan/pyphlan/fna_sss.py
  42. share/graphlan/pyphlan/fna_t2g.py
  43. share/graphlan/pyphlan/libsvm_cv.py
  44. share/graphlan/pyphlan/license.txt
  45. share/graphlan/pyphlan/merg_ctxt.py
  46. share/graphlan/pyphlan/mlst_table2fna.py
  47. share/graphlan/pyphlan/msg.py
  48. share/graphlan/pyphlan/pyphlan.py
  49. share/graphlan/pyphlan/tab.py
  50. share/graphlan/pyphlan/tab.pyc
  51. share/graphlan/pyphlan/tab_sel_cols.py
  52. share/graphlan/pyphlan/tab_sub.py
  53. share/graphlan/pyphlan/tree_cores.py
  54. share/graphlan/pyphlan/tree_get_leaves.py
  55. share/graphlan/pyphlan/tree_get_subtrees.py
  56. share/graphlan/pyphlan/tree_markers.py
  57. share/graphlan/pyphlan/tree_pairwisedists.py
  58. share/graphlan/pyphlan/tree_precision.py
  59. share/graphlan/pyphlan/tree_prune.py
  60. share/graphlan/pyphlan/tree_recall.py
  61. share/graphlan/pyphlan/tree_rename.py
  62. share/graphlan/pyphlan/tree_reroot.py
  63. share/graphlan/pyphlan/tree_select_markers.py
  64. share/graphlan/pyphlan/tree_subtree.py
  65. share/graphlan/pyphlan/util_argparse.py
  66. share/graphlan/pyphlan/utils.py
  67. share/graphlan/readme.txt
  68. share/graphlan/src/__init__.py
  69. share/graphlan/src/graphlan_lib.py
  70. share/graphlan/src/pyphlan.py
  71. Collapse this list.
Dependency lines:
  • graphlan>0:biology/graphlan

To install the port: cd /usr/ports/biology/graphlan/ && make install clean
To add the package: pkg install graphlan

PKGNAME: graphlan

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1549221812
SHA256 (graphlan-v1.1.3-66ec7cfce81e.tar.gz) = 8931bb166ea46b761d3e1694ff164b82585d5d5ba751ca9cb093bc2fe91c1cb0
SIZE (graphlan-v1.1.3-66ec7cfce81e.tar.gz) = 2608529
SHA256 (pyphlan-eae40ebc0030.tar.gz) = 5f9d8e9d8ca5d6c458ba8ce7a7bb2e4a2e9944dc36c6b04850cdcfa4efa046c6
SIZE (pyphlan-eae40ebc0030.tar.gz) = 27139
SHA256 (export2graphlan-c168a100f37e.tar.gz) = 7f2738154a9c33c6ab902cc43f498b0bc9a0d038e96154ca0eadef29bc631c6b
SIZE (export2graphlan-c168a100f37e.tar.gz) = 549743


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. python2.7 : lang/python27
Runtime dependencies:
  1. python2.7 : lang/python27
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
python:2.7 shebangfix

Master Sites:
  1. https://bitbucket.org/nsegata/graphlan/get/66ec7cfce81e.tar.gz?dummy=/

Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
03 Feb 2019 20:13:26
Original commit files touched by this commit  1.1.3
Revision:492071
yuri search for other commits by this committer
New port: biology/graphlan: High-quality circular representations of taxonomic,
phylogenetic trees

Number of commits found: 1

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Last updated:
2019-04-18 16:21:36


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