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Port details
hyphy Hypothesis testing using Phylogenies
2.5.26 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.5.24Version of this port present on the latest quarterly branch.
Maintainer: jrm@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-05-11 00:05:33
Last Update: 2021-01-15 20:09:29
SVN Revision: 561665
License: MIT
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (441 items)
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  1. /usr/local/share/licenses/hyphy-2.5.26/catalog.mk
  2. /usr/local/share/licenses/hyphy-2.5.26/LICENSE
  3. /usr/local/share/licenses/hyphy-2.5.26/MIT
  4. bin/hyphy
  5. share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod
  6. share/hyphy/GeneticCodes/Ascidian_mtDNA.cod
  7. share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod
  8. share/hyphy/GeneticCodes/Ciliate.cod
  9. share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod
  10. share/hyphy/GeneticCodes/Euplotid_Nuclear.cod
  11. share/hyphy/GeneticCodes/Flatworm_mtDNA.cod
  12. share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod
  13. share/hyphy/GeneticCodes/Mold_mtDNA.cod
  14. share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod
  15. share/hyphy/GeneticCodes/Vertebratemtdna.cod
  16. share/hyphy/GeneticCodes/Yeast_mtDNA.cod
  17. share/hyphy/SubstitutionClasses/AAEFV/Equal
  18. share/hyphy/SubstitutionClasses/AAEFV/Estimated
  19. share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set
  20. share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition
  21. share/hyphy/SubstitutionClasses/CodonEFV/Equal
  22. share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon
  23. share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params.
  24. share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params.
  25. share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete
  26. share/hyphy/SubstitutionClasses/Heterogeneity/Beta
  27. share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma
  28. share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete
  29. share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal
  30. share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal
  31. share/hyphy/SubstitutionClasses/NucEFV/Equal
  32. share/hyphy/SubstitutionClasses/NucEFV/Estimated
  33. share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set
  34. share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition
  35. share/hyphy/SubstitutionClasses/aa.bf
  36. share/hyphy/SubstitutionClasses/codon.bf
  37. share/hyphy/SubstitutionClasses/dinuc.bf
  38. share/hyphy/SubstitutionClasses/nuc.bf
  39. share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl
  40. share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl
  41. share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl
  42. share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl
  43. share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl
  44. share/hyphy/SubstitutionModels/Binary/F81.mdl
  45. share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl
  46. share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl
  47. share/hyphy/SubstitutionModels/Codon/MG94.mdl
  48. share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl
  49. share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl
  50. share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl
  51. share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl
  52. share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl
  53. share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl
  54. share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl
  55. share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl
  56. share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf
  57. share/hyphy/SubstitutionModels/Nucleotide/F81.mdl
  58. share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl
  59. share/hyphy/SubstitutionModels/Nucleotide/REV.mdl
  60. share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl
  61. share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl
  62. share/hyphy/SubstitutionModels/User/Nucleotide/JC69
  63. share/hyphy/SubstitutionModels/User/Nucleotide/K2P
  64. share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl
  65. share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl
  66. share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl
  67. share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl
  68. share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl
  69. share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def
  70. share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def
  71. share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def
  72. share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def
  73. share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def
  74. share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf
  75. share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf
  76. share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def
  77. share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def
  78. share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def
  79. share/hyphy/TemplateBatchFiles/AAModelComparison.bf
  80. share/hyphy/TemplateBatchFiles/AddABias.ibf
  81. share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf
  82. share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf
  83. share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf
  84. share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf
  85. share/hyphy/TemplateBatchFiles/BGM.bf
  86. share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf
  87. share/hyphy/TemplateBatchFiles/BranchSiteREL.bf
  88. share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf
  89. share/hyphy/TemplateBatchFiles/CleanGaps.bf
  90. share/hyphy/TemplateBatchFiles/CleanStopCodons.bf
  91. share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf
  92. share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf
  93. share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf
  94. share/hyphy/TemplateBatchFiles/CodonModelCompare.bf
  95. share/hyphy/TemplateBatchFiles/CodonToProtein.bf
  96. share/hyphy/TemplateBatchFiles/ConvertDataFile.bf
  97. share/hyphy/TemplateBatchFiles/DistanceMatrix.bf
  98. share/hyphy/TemplateBatchFiles/Distances/CodonTools.def
  99. share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def
  100. share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def
  101. share/hyphy/TemplateBatchFiles/Distances/JC69
  102. share/hyphy/TemplateBatchFiles/Distances/K2P
  103. share/hyphy/TemplateBatchFiles/Distances/K2P_RV
  104. share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori
  105. share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori
  106. share/hyphy/TemplateBatchFiles/Distances/PC
  107. share/hyphy/TemplateBatchFiles/Distances/PC_MH
  108. share/hyphy/TemplateBatchFiles/Distances/PC_RV
  109. share/hyphy/TemplateBatchFiles/Distances/T3P
  110. share/hyphy/TemplateBatchFiles/Distances/TN84
  111. share/hyphy/TemplateBatchFiles/Distances/TN93
  112. share/hyphy/TemplateBatchFiles/Distances/TN93_RV
  113. share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ
  114. share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR
  115. share/hyphy/TemplateBatchFiles/Distances/p_Distance
  116. share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa
  117. share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary
  118. share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon
  119. share/hyphy/TemplateBatchFiles/F_ST.bf
  120. share/hyphy/TemplateBatchFiles/FitnessAAModels.bf
  121. share/hyphy/TemplateBatchFiles/GARD.bf
  122. share/hyphy/TemplateBatchFiles/GA_CHC.ibf
  123. share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf
  124. share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def
  125. share/hyphy/TemplateBatchFiles/Gateaux.bf
  126. share/hyphy/TemplateBatchFiles/GateauxMR.bf
  127. share/hyphy/TemplateBatchFiles/KHTest.bf
  128. share/hyphy/TemplateBatchFiles/LEISR.bf
  129. share/hyphy/TemplateBatchFiles/LHT.bf
  130. share/hyphy/TemplateBatchFiles/LRTRecombTest.bf
  131. share/hyphy/TemplateBatchFiles/LZ_Complexity.bf
  132. share/hyphy/TemplateBatchFiles/LocalMolClock.bf
  133. share/hyphy/TemplateBatchFiles/MGvsGY.bf
  134. share/hyphy/TemplateBatchFiles/MergeSequences.bf
  135. share/hyphy/TemplateBatchFiles/MergeSites.bf
  136. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf
  137. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf
  138. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf
  139. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf
  140. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf
  141. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf
  142. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf
  143. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf
  144. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf
  145. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf
  146. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf
  147. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex
  148. share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex
  149. share/hyphy/TemplateBatchFiles/ModelTest.bf
  150. share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf
  151. share/hyphy/TemplateBatchFiles/MolecularClock.bf
  152. share/hyphy/TemplateBatchFiles/NeighborJoining.bf
  153. share/hyphy/TemplateBatchFiles/NielsenYang.bf
  154. share/hyphy/TemplateBatchFiles/NucModelCompare.bf
  155. share/hyphy/TemplateBatchFiles/PARRIS.bf
  156. share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf
  157. share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf
  158. share/hyphy/TemplateBatchFiles/PartitionDataFile.bf
  159. share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf
  160. share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf
  161. share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md
  162. share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf
  163. share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf
  164. share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf
  165. share/hyphy/TemplateBatchFiles/RelativeRate.bf
  166. share/hyphy/TemplateBatchFiles/RelativeRatio.bf
  167. share/hyphy/TemplateBatchFiles/SGASimProcessor.bf
  168. share/hyphy/TemplateBatchFiles/SGEmulator.bf
  169. share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf
  170. share/hyphy/TemplateBatchFiles/SGIvL.bf
  171. share/hyphy/TemplateBatchFiles/SM-2019.bf
  172. share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf
  173. share/hyphy/TemplateBatchFiles/Samplers/lhc.bf
  174. share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf
  175. share/hyphy/TemplateBatchFiles/Samplers/sir.bf
  176. share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf
  177. share/hyphy/TemplateBatchFiles/Samplers/srs.ibf
  178. share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf
  179. share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
  180. share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf
  181. share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf
  182. share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf
  183. share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf
  184. share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf
  185. share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf
  186. share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
  187. share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf
  188. share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
  189. share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf
  190. share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf
  191. share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
  192. share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
  193. share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf
  194. share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
  195. share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf
  196. share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
  197. share/hyphy/TemplateBatchFiles/SelectionLRT.bf
  198. share/hyphy/TemplateBatchFiles/SeqAlignShared.ibf
  199. share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf
  200. share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf
  201. share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf
  202. share/hyphy/TemplateBatchFiles/SequentialAddition.bf
  203. share/hyphy/TemplateBatchFiles/SequentialAddition.ibf
  204. share/hyphy/TemplateBatchFiles/SimilarityPlot.bf
  205. share/hyphy/TemplateBatchFiles/SimmondsAI.bf
  206. share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf
  207. share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf
  208. share/hyphy/TemplateBatchFiles/TemplateModels/190
  209. share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl
  210. share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf
  211. share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl
  212. share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl
  213. share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl
  214. share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl
  215. share/hyphy/TemplateBatchFiles/TemplateModels/Default
  216. share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl
  217. share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl
  218. share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl
  219. share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl
  220. share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl
  221. share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl
  222. share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl
  223. share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat
  224. share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl
  225. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62
  226. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff
  227. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1
  228. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween
  229. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin
  230. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV
  231. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT
  232. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP
  233. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG
  234. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt
  235. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT
  236. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG
  237. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV
  238. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf
  239. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM
  240. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24
  241. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV
  242. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM
  243. share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu
  244. share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl
  245. share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl
  246. share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl
  247. share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl
  248. share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl
  249. share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf
  250. share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl
  251. share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl
  252. share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl
  253. share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl
  254. share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf
  255. share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl
  256. share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl
  257. share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf
  258. share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl
  259. share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl
  260. share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl
  261. share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl
  262. share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl
  263. share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl
  264. share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl
  265. share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl
  266. share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl
  267. share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl
  268. share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl
  269. share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl
  270. share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl
  271. share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl
  272. share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl
  273. share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl
  274. share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl
  275. share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl
  276. share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl
  277. share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl
  278. share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl
  279. share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl
  280. share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl
  281. share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf
  282. share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf
  283. share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf
  284. share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl
  285. share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl
  286. share/hyphy/TemplateBatchFiles/TemplateModels/PCH
  287. share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl
  288. share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A
  289. share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl
  290. share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput
  291. share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81
  292. share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl
  293. share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV
  294. share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1
  295. share/hyphy/TemplateBatchFiles/TemplateModels/S4
  296. share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl
  297. share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl
  298. share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def
  299. share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl
  300. share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl
  301. share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def
  302. share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def
  303. share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl
  304. share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl
  305. share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl
  306. share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl
  307. share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl
  308. share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl
  309. share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl
  310. share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl
  311. share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl
  312. share/hyphy/TemplateBatchFiles/TemplateModels/models.lst
  313. share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl
  314. share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl
  315. share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl
  316. share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl
  317. share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl
  318. share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl
  319. share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl
  320. share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl
  321. share/hyphy/TemplateBatchFiles/TestBranchDNDS.bf
  322. share/hyphy/TemplateBatchFiles/TestClade.bf
  323. share/hyphy/TemplateBatchFiles/TestCladeMeans.bf
  324. share/hyphy/TemplateBatchFiles/TopologySearch.bf
  325. share/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf
  326. share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf
  327. share/hyphy/TemplateBatchFiles/TreeTools.ibf
  328. share/hyphy/TemplateBatchFiles/UpperBound.bf
  329. share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf
  330. share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf
  331. share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf
  332. share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf
  333. share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf
  334. share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf
  335. share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf
  336. share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf
  337. share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf
  338. share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf
  339. share/hyphy/TemplateBatchFiles/Utility/MPITools.bf
  340. share/hyphy/TemplateBatchFiles/Utility/NJ.bf
  341. share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf
  342. share/hyphy/TemplateBatchFiles/Utility/PostScript.bf
  343. share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf
  344. share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf
  345. share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf
  346. share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf
  347. share/hyphy/TemplateBatchFiles/WANC.bf
  348. share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf
  349. share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf
  350. share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf
  351. share/hyphy/TemplateBatchFiles/_MFReader_.ibf
  352. share/hyphy/TemplateBatchFiles/_tipDater.ibf
  353. share/hyphy/TemplateBatchFiles/bayesgraph.ibf
  354. share/hyphy/TemplateBatchFiles/binomial.ibf
  355. share/hyphy/TemplateBatchFiles/branchSwappingFunctions.bf
  356. share/hyphy/TemplateBatchFiles/categoryEcho.bf
  357. share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def
  358. share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf
  359. share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf
  360. share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf
  361. share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf
  362. share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf
  363. share/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf
  364. share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf
  365. share/hyphy/TemplateBatchFiles/doNNISwap.bf
  366. share/hyphy/TemplateBatchFiles/doSPRSwap.bf
  367. share/hyphy/TemplateBatchFiles/files.lst
  368. share/hyphy/TemplateBatchFiles/globalChecker.ibf
  369. share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf
  370. share/hyphy/TemplateBatchFiles/last.date
  371. share/hyphy/TemplateBatchFiles/libv3/IOFunctions.bf
  372. share/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf
  373. share/hyphy/TemplateBatchFiles/libv3/all-terms.bf
  374. share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf
  375. share/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf
  376. share/hyphy/TemplateBatchFiles/libv3/convenience/random.bf
  377. share/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf
  378. share/hyphy/TemplateBatchFiles/libv3/function-loader.bf
  379. share/hyphy/TemplateBatchFiles/libv3/models/DNA.bf
  380. share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR-MutSel.bf
  381. share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR.bf
  382. share/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf
  383. share/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf
  384. share/hyphy/TemplateBatchFiles/libv3/models/binary.bf
  385. share/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf
  386. share/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf
  387. share/hyphy/TemplateBatchFiles/libv3/models/codon.bf
  388. share/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
  389. share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
  390. share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf
  391. share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf
  392. share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf
  393. share/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf
  394. share/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf
  395. share/hyphy/TemplateBatchFiles/libv3/models/parameters.bf
  396. share/hyphy/TemplateBatchFiles/libv3/models/protein.bf
  397. share/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf
  398. share/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf
  399. share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/HIV.ibf
  400. share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf
  401. share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JTT.ibf
  402. share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/LG.ibf
  403. share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/WAG.ibf
  404. share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf
  405. share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf
  406. share/hyphy/TemplateBatchFiles/libv3/models/protein/matrix2dict_aux.bf
  407. share/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf
  408. share/hyphy/TemplateBatchFiles/libv3/stats.bf
  409. share/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf
  410. share/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf
  411. share/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf
  412. share/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf
  413. share/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf
  414. share/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf
  415. share/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf
  416. share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf
  417. share/hyphy/TemplateBatchFiles/molclockBootstrap.bf
  418. share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf
  419. share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf
  420. share/hyphy/TemplateBatchFiles/partitionSequences.ibf
  421. share/hyphy/TemplateBatchFiles/posteriors.ibf
  422. share/hyphy/TemplateBatchFiles/qndhelper1.ibf
  423. share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf
  424. share/hyphy/TemplateBatchFiles/qndhelper2.ibf
  425. share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf
  426. share/hyphy/TemplateBatchFiles/qndhelper3.ibf
  427. share/hyphy/TemplateBatchFiles/qndhelper4.ibf
  428. share/hyphy/TemplateBatchFiles/queryTree.bf
  429. share/hyphy/TemplateBatchFiles/readIndexFile.bf
  430. share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf
  431. share/hyphy/TemplateBatchFiles/relrateBootstrap.bf
  432. share/hyphy/TemplateBatchFiles/relratioBootstrap.bf
  433. share/hyphy/TemplateBatchFiles/selectModelParameters.bf
  434. share/hyphy/TemplateBatchFiles/simpleBootstrap.bf
  435. share/hyphy/data/brown.nuc
  436. share/hyphy/data/integrase_BDA.nex
  437. share/hyphy/data/p51.aa
  438. share/hyphy/data/p51.nex
  439. @owner
  440. @group
  441. @mode
Collapse this list.
  • hyphy>0:biology/hyphy
To install the port: cd /usr/ports/biology/hyphy/ && make install clean
To add the package: pkg install hyphy
PKGNAME: hyphy
Flavors: there is no flavor information for this port.
ONLY_FOR_ARCHS: amd64 i386
distinfo:
Packages: (move your mouse over the cells for more information)
hyphy
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd642.5.262.5.24
FreeBSD:11:armv6--
FreeBSD:11:i3862.5.262.5.24
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd642.5.262.5.24
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3862.5.262.5.24
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd642.5.26-
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3862.5.26-
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
Library dependencies:
  1. libcurl.so : ftp/curl
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
Expand this list (1 items)
    Collapse this list.
  1. https://codeload.github.com/veg/hyphy/tar.gz/2.5.26?dummy=/
  2. Collapse this list.

Number of commits found: 27

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
15 Jan 2021 20:09:29
Original commit files touched by this commit  2.5.26
Revision:561665
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.26

https://github.com/veg/hyphy/releases/tag/2.5.26
11 Jan 2021 17:54:42
Original commit files touched by this commit  2.5.25_1
Revision:561239
jrm search for other commits by this committer
biology/hyphy: Remove USES=compiler:openmp

USES=compiler:openmp still forces building with GCC.  This is no longer
necessary on tier 1 platforms, which have openmp in the base system.

PR:		247753, 252379
11 Jan 2021 02:51:30
Original commit files touched by this commit  2.5.25
Revision:561185
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.25

https://github.com/veg/hyphy/releases/tag/2.5.25
20 Dec 2020 20:21:53
Original commit files touched by this commit  2.5.24
Revision:558773
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.24

https://github.com/veg/hyphy/releases/tag/2.5.24
19 Nov 2020 10:53:56
Original commit files touched by this commit  2.5.23
Revision:555698
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.23

Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.23
18 Nov 2020 10:54:04
Original commit files touched by this commit  2.5.22
Revision:555628
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.22

Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.22hf
30 Oct 2020 14:05:47
Original commit files touched by this commit  2.5.21
Revision:553693
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.21
16 Oct 2020 23:43:17
Original commit files touched by this commit  2.5.20
Revision:552526
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.20
13 Oct 2020 01:05:45
Original commit files touched by this commit  2.5.19
Revision:552165
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.19

Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.19
02 Sep 2020 17:47:10
Original commit files touched by this commit  2.5.18
Revision:547370
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.18 and add AVX option

The AVX option is off by default, because hyphy will crash on systems
without advanced vector extensions support.
20 Aug 2020 16:15:22
Original commit files touched by this commit  2.5.17
Revision:545538
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.17

Upstream changes:
https://github.com/veg/hyphy/releases/tag/2.5.16
https://github.com/veg/hyphy/releases/tag/2.5.17
28 Jun 2020 16:40:34
Original commit files touched by this commit  2.5.15
Revision:540728
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.15

Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.15
30 May 2020 19:39:11
Original commit files touched by this commit  2.5.14
Revision:537106
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.14

Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.14
03 May 2020 02:08:20
Original commit files touched by this commit  2.5.12
Revision:533731
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.12

Upstream changes:

https://github.com/veg/hyphy/releases/tag/2.5.11
https://github.com/veg/hyphy/releases/tag/2.5.12
25 Apr 2020 00:33:17
Original commit files touched by this commit  2.5.10
Revision:532908
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.10

Upstream changes:
https://github.com/veg/hyphy/releases/tag/2.5.9
https://github.com/veg/hyphy/releases/tag/2.5.10
28 Mar 2020 12:27:11
Original commit files touched by this commit  2.5.8
Revision:529331
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.8

Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.8
20 Mar 2020 01:30:46
Original commit files touched by this commit  2.5.7
Revision:528753
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.7

Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.7
17 Mar 2020 18:17:16
Original commit files touched by this commit  2.5.6
Revision:528590
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.6

Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.6
02 Mar 2020 01:31:57
Original commit files touched by this commit  2.5.5
Revision:527606
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.5

Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.5
21 Feb 2020 12:22:17
Original commit files touched by this commit  2.5.4
Revision:526622
jrm search for other commits by this committer
biology/hyphy: Update to version 2.5.4

Upstream changes: https://github.com/veg/hyphy/releases
26 Jul 2019 20:46:57
Original commit files touched by this commit  2.3.14.16_2
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
25 Dec 2018 20:25:40
Original commit files touched by this commit  2.3.14.16_1
Revision:488341
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
12 Dec 2018 01:35:36
Original commit files touched by this commit  2.3.14.16_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
20 Oct 2018 12:21:15
Original commit files touched by this commit  2.3.14.16
Revision:482495
jrm search for other commits by this committer
biology/hyphy: Update to version 2.3.14.16

This pulls in fixes after the 2.3.14 release.

Upstream changes for version 2.3.14:
https://github.com/veg/hyphy/releases/tag/2.3.14

Subsequent fixes:
https://github.com/veg/hyphy/commit/1ecac31
https://github.com/veg/hyphy/commit/bec6833
https://github.com/veg/hyphy/commit/9847438
https://github.com/veg/hyphy/commit/02dcedd
https://github.com/veg/hyphy/commit/8f44d3c
https://github.com/veg/hyphy/commit/5297c30
https://github.com/veg/hyphy/commit/3d88d3e
22 May 2018 22:55:18
Original commit files touched by this commit  2.3.13
Revision:470664
jrm search for other commits by this committer
biology/hyphy: Update to version 2.3.13
14 May 2018 16:52:40
Original commit files touched by this commit  2.3.12_1
Revision:469922
jrm search for other commits by this committer
biology/hyphy: Bump PORTREVISION after upstream rerolled release

Also, remove patch that upstream incorporated in new tarball.

Upstream issue: https://github.com/veg/hyphy/issues/796
11 May 2018 00:05:16
Original commit files touched by this commit  2.3.12
Revision:469604
jrm search for other commits by this committer
New port, biology/hyphy: Hypothesis testing using Phylogenies

WWW: http://www.hyphy.org/

Number of commits found: 27

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