| Commit History - (may be incomplete: see SVNWeb link above for full details) |
| Date | By | Description |
15 Jan 2021 20:09:29
  2.5.26
|
jrm  |
biology/hyphy: Update to version 2.5.26
https://github.com/veg/hyphy/releases/tag/2.5.26 |
11 Jan 2021 17:54:42
2.5.25_1
|
jrm |
biology/hyphy: Remove USES=compiler:openmp
USES=compiler:openmp still forces building with GCC. This is no longer
necessary on tier 1 platforms, which have openmp in the base system.
PR: 247753, 252379 |
11 Jan 2021 02:51:30
2.5.25
|
jrm |
biology/hyphy: Update to version 2.5.25
https://github.com/veg/hyphy/releases/tag/2.5.25 |
20 Dec 2020 20:21:53
2.5.24
|
jrm |
biology/hyphy: Update to version 2.5.24
https://github.com/veg/hyphy/releases/tag/2.5.24 |
19 Nov 2020 10:53:56
2.5.23
|
jrm |
biology/hyphy: Update to version 2.5.23
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.23 |
18 Nov 2020 10:54:04
2.5.22
|
jrm |
biology/hyphy: Update to version 2.5.22
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.22hf |
30 Oct 2020 14:05:47
2.5.21
|
jrm |
biology/hyphy: Update to version 2.5.21 |
16 Oct 2020 23:43:17
2.5.20
|
jrm |
biology/hyphy: Update to version 2.5.20 |
13 Oct 2020 01:05:45
2.5.19
|
jrm |
biology/hyphy: Update to version 2.5.19
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.19 |
02 Sep 2020 17:47:10
2.5.18
|
jrm |
biology/hyphy: Update to version 2.5.18 and add AVX option
The AVX option is off by default, because hyphy will crash on systems
without advanced vector extensions support. |
20 Aug 2020 16:15:22
2.5.17
|
jrm |
biology/hyphy: Update to version 2.5.17
Upstream changes:
https://github.com/veg/hyphy/releases/tag/2.5.16
https://github.com/veg/hyphy/releases/tag/2.5.17 |
28 Jun 2020 16:40:34
2.5.15
|
jrm |
biology/hyphy: Update to version 2.5.15
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.15 |
30 May 2020 19:39:11
2.5.14
|
jrm |
biology/hyphy: Update to version 2.5.14
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.14 |
03 May 2020 02:08:20
2.5.12
|
jrm |
biology/hyphy: Update to version 2.5.12
Upstream changes:
https://github.com/veg/hyphy/releases/tag/2.5.11
https://github.com/veg/hyphy/releases/tag/2.5.12 |
25 Apr 2020 00:33:17
2.5.10
|
jrm |
biology/hyphy: Update to version 2.5.10
Upstream changes:
https://github.com/veg/hyphy/releases/tag/2.5.9
https://github.com/veg/hyphy/releases/tag/2.5.10 |
28 Mar 2020 12:27:11
2.5.8
|
jrm |
biology/hyphy: Update to version 2.5.8
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.8 |
20 Mar 2020 01:30:46
2.5.7
|
jrm |
biology/hyphy: Update to version 2.5.7
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.7 |
17 Mar 2020 18:17:16
2.5.6
|
jrm |
biology/hyphy: Update to version 2.5.6
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.6 |
02 Mar 2020 01:31:57
2.5.5
|
jrm |
biology/hyphy: Update to version 2.5.5
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.5 |
21 Feb 2020 12:22:17
2.5.4
|
jrm |
biology/hyphy: Update to version 2.5.4
Upstream changes: https://github.com/veg/hyphy/releases |
26 Jul 2019 20:46:57
2.3.14.16_2
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330 |
25 Dec 2018 20:25:40
2.3.14.16_1
|
tcberner |
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine |
12 Dec 2018 01:35:36
2.3.14.16_1
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590 |
20 Oct 2018 12:21:15
2.3.14.16
|
jrm |
biology/hyphy: Update to version 2.3.14.16
This pulls in fixes after the 2.3.14 release.
Upstream changes for version 2.3.14:
https://github.com/veg/hyphy/releases/tag/2.3.14
Subsequent fixes:
https://github.com/veg/hyphy/commit/1ecac31
https://github.com/veg/hyphy/commit/bec6833
https://github.com/veg/hyphy/commit/9847438
https://github.com/veg/hyphy/commit/02dcedd
https://github.com/veg/hyphy/commit/8f44d3c
https://github.com/veg/hyphy/commit/5297c30
https://github.com/veg/hyphy/commit/3d88d3e |
22 May 2018 22:55:18
2.3.13
|
jrm |
biology/hyphy: Update to version 2.3.13 |
14 May 2018 16:52:40
2.3.12_1
|
jrm |
biology/hyphy: Bump PORTREVISION after upstream rerolled release
Also, remove patch that upstream incorporated in new tarball.
Upstream issue: https://github.com/veg/hyphy/issues/796 |
11 May 2018 00:05:16
2.3.12
|
jrm |
New port, biology/hyphy: Hypothesis testing using Phylogenies
WWW: http://www.hyphy.org/ |
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