| Port details |
- hyphy Hypothesis testing using Phylogenies
2.3.14.16 biology  =0   
- Maintainer: jrm@FreeBSD.org
Port Added: 11 May 2018 00:05:33
License: MIT
HyPhy is an open-source software package for the analysis of genetic sequences
using techniques in phylogenetics, molecular evolution, and machine learning. It
features a rich scripting language for limitless customization of
analyses. Additionally, HyPhy features support for parallel computing
environments via message passing interface, MPI and it can be compiled as a
shared library and called from other programming environments such as Python and
R.
WWW: http://www.hyphy.org/ SVNWeb : Homepage : PortsMon
To install the port: cd /usr/ports/biology/hyphy/ && make install clean
To add the package: pkg install hyphy PKGNAME: hyphy ONLY_FOR_ARCHS: amd64 i386 distinfo: TIMESTAMP = 1540036335
SHA256 (veg-hyphy-2.3.14-16-g3d88d3e6_GH0.tar.gz) = 459cd0a261ae5f31dc230847acbd294a4dc1e17fa69ef0c3db173c2b8808c826
SIZE (veg-hyphy-2.3.14-16-g3d88d3e6_GH0.tar.gz) = 8041349
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered. Build dependencies:
- cmake : devel/cmake
- ninja : devel/ninja
Library dependencies:
- libcurl.so : ftp/curl
There are no ports dependent upon this port
Configuration Options
No options to configure
USES:
compiler:c++14-lang cmake:outsource localbase:ldflags ssl
Master Sites:
- https://codeload.github.com/veg/hyphy/tar.gz/2.3.14-16-g3d88d3e6?dummy=/
|
Number of commits found: 4
| Commit History - (may be incomplete: see SVNWeb link above for full details) |
| Date | By | Description |
20 Oct 2018 12:21:15
  2.3.14.16
 |
jrm |
biology/hyphy: Update to version 2.3.14.16
This pulls in fixes after the 2.3.14 release.
Upstream changes for version 2.3.14:
https://github.com/veg/hyphy/releases/tag/2.3.14
Subsequent fixes:
https://github.com/veg/hyphy/commit/1ecac31
https://github.com/veg/hyphy/commit/bec6833
https://github.com/veg/hyphy/commit/9847438
https://github.com/veg/hyphy/commit/02dcedd
https://github.com/veg/hyphy/commit/8f44d3c
https://github.com/veg/hyphy/commit/5297c30
https://github.com/veg/hyphy/commit/3d88d3e |
22 May 2018 22:55:18
2.3.13
|
jrm |
biology/hyphy: Update to version 2.3.13 |
14 May 2018 16:52:40
2.3.12_1
|
jrm |
biology/hyphy: Bump PORTREVISION after upstream rerolled release
Also, remove patch that upstream incorporated in new tarball.
Upstream issue: https://github.com/veg/hyphy/issues/796 |
11 May 2018 00:05:16
2.3.12
|
jrm |
New port, biology/hyphy: Hypothesis testing using Phylogenies
WWW: http://www.hyphy.org/ |
Number of commits found: 4
|
| Latest Vulnerabilities |
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11 vulnerabilities affecting 80 ports have been reported in the past 14 days
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* - modified, not new All vulnerabilities
Last updated:
2018-12-10 05:56:16
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