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Port details
igv Visualization tool for genomic datasets
2.9.4 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.9.4Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-06-25 23:56:14
Last Update: 2021-09-30 21:23:30
Commit Hash: 620968a
Also Listed In: java
License: MIT
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (269 items)
Collapse this list.
  1. /usr/local/share/licenses/igv-2.9.4/catalog.mk
  2. /usr/local/share/licenses/igv-2.9.4/LICENSE
  3. /usr/local/share/licenses/igv-2.9.4/MIT
  4. bin/igv
  5. share/java/classes/igv/AbsoluteLayout-RELEASE110.jar
  6. share/java/classes/igv/annotations-2.15.67.jar
  7. share/java/classes/igv/apache-client-2.15.67.jar
  8. share/java/classes/igv/arns-2.15.67.jar
  9. share/java/classes/igv/auth-2.15.67.jar
  10. share/java/classes/igv/aws-core-2.15.67.jar
  11. share/java/classes/igv/aws-json-protocol-2.15.67.jar
  12. share/java/classes/igv/aws-query-protocol-2.15.67.jar
  13. share/java/classes/igv/aws-xml-protocol-2.15.67.jar
  14. share/java/classes/igv/batik-awt-util-1.11.jar
  15. share/java/classes/igv/batik-codec-1.11.jar
  16. share/java/classes/igv/batik-constants-1.11.jar
  17. share/java/classes/igv/batik-dom-1.11.jar
  18. share/java/classes/igv/batik-ext-1.11.jar
  19. share/java/classes/igv/batik-i18n-1.11.jar
  20. share/java/classes/igv/batik-svggen-1.11.jar
  21. share/java/classes/igv/batik-transcoder-1.11.jar
  22. share/java/classes/igv/batik-util-1.11.jar
  23. share/java/classes/igv/batik-xml-1.11.jar
  24. share/java/classes/igv/cognitoidentity-2.15.67.jar
  25. share/java/classes/igv/commons-codec-1.11.jar
  26. share/java/classes/igv/commons-collections-20040616.jar
  27. share/java/classes/igv/commons-compress-1.19.jar
  28. share/java/classes/igv/commons-configuration-1.10.jar
  29. share/java/classes/igv/commons-io-2.6.jar
  30. share/java/classes/igv/commons-jexl-2.1.1.jar
  31. share/java/classes/igv/commons-lang-2.6.jar
  32. share/java/classes/igv/commons-lang3-3.9.jar
  33. share/java/classes/igv/commons-logging-1.2.jar
  34. share/java/classes/igv/commons-math3-3.6.1.jar
  35. share/java/classes/igv/dsiutils-2.3.3.jar
  36. share/java/classes/igv/eventstream-1.0.1.jar
  37. share/java/classes/igv/fastutil-7.0.12.jar
  38. share/java/classes/igv/genomes/1kg_ref.chrom.sizes
  39. share/java/classes/igv/genomes/1kg_v37.chrom.sizes
  40. share/java/classes/igv/genomes/1kg_v37_alias.tab
  41. share/java/classes/igv/genomes/ABaumannii_ATCC_17978.chrom.sizes
  42. share/java/classes/igv/genomes/ABaumannii_AYE_uid61637.chrom.sizes
  43. share/java/classes/igv/genomes/AGPv3.31.chrom.sizes
  44. share/java/classes/igv/genomes/AgamP3.chrom.sizes
  45. share/java/classes/igv/genomes/Aplysia.chrom.sizes
  46. share/java/classes/igv/genomes/B73.chrom.sizes
  47. share/java/classes/igv/genomes/CCAF000000000.chrom.sizes
  48. share/java/classes/igv/genomes/CE_1.0.chrom.sizes
  49. share/java/classes/igv/genomes/CSavignyi_v2.1.chrom.sizes
  50. share/java/classes/igv/genomes/D.discoideum.chrom.sizes
  51. share/java/classes/igv/genomes/EBV_Type2.chrom.sizes
  52. share/java/classes/igv/genomes/Foxy4287.chrom.sizes
  53. share/java/classes/igv/genomes/GCF_000233375.1.chrom.sizes
  54. share/java/classes/igv/genomes/GSM552910.chrom.sizes
  55. share/java/classes/igv/genomes/GSM552910_alias.tab
  56. share/java/classes/igv/genomes/Glamblia_2.0.chrom.sizes
  57. share/java/classes/igv/genomes/HHV4_Type1.chrom.sizes
  58. share/java/classes/igv/genomes/ITAG2.3.chrom.sizes
  59. share/java/classes/igv/genomes/ITAG2.3_alias.tab
  60. share/java/classes/igv/genomes/M74568.chrom.sizes
  61. share/java/classes/igv/genomes/MusPutFur1.0.chrom.sizes
  62. share/java/classes/igv/genomes/MusaAcuminata.chrom.sizes
  63. share/java/classes/igv/genomes/MusaBalbisianaPKWv1.chrom.sizes
  64. share/java/classes/igv/genomes/NC_000913.2.chrom.sizes
  65. share/java/classes/igv/genomes/NC_000913.2_alias.tab
  66. share/java/classes/igv/genomes/NC_000913.chrom.sizes
  67. share/java/classes/igv/genomes/NC_000964.chrom.sizes
  68. share/java/classes/igv/genomes/NC_001405.chrom.sizes
  69. share/java/classes/igv/genomes/NC_001422.chrom.sizes
  70. share/java/classes/igv/genomes/NC_001623.chrom.sizes
  71. share/java/classes/igv/genomes/NC_001722.chrom.sizes
  72. share/java/classes/igv/genomes/NC_001802.chrom.sizes
  73. share/java/classes/igv/genomes/NC_002655.2.chrom.sizes
  74. share/java/classes/igv/genomes/NC_002755.chrom.sizes
  75. share/java/classes/igv/genomes/NC_002929.chrom.sizes
  76. share/java/classes/igv/genomes/NC_003112.chrom.sizes
  77. share/java/classes/igv/genomes/NC_003116.chrom.sizes
  78. share/java/classes/igv/genomes/NC_004917.chrom.sizes
  79. share/java/classes/igv/genomes/NC_008601.chrom.sizes
  80. share/java/classes/igv/genomes/NC_008767.chrom.sizes
  81. share/java/classes/igv/genomes/NC_009012.chrom.sizes
  82. share/java/classes/igv/genomes/NC_009012_alias.tab
  83. share/java/classes/igv/genomes/NC_012920.chrom.sizes
  84. share/java/classes/igv/genomes/NC_016856.chrom.sizes
  85. share/java/classes/igv/genomes/O_Sativa_r6.chrom.sizes
  86. share/java/classes/igv/genomes/OryCun2.0.chrom.sizes
  87. share/java/classes/igv/genomes/Pf3D7_v9.0.chrom.sizes
  88. share/java/classes/igv/genomes/Pf3D7_v9.0_alias.tab
  89. share/java/classes/igv/genomes/PlasmoDB_24.chrom.sizes
  90. share/java/classes/igv/genomes/PlasmoDB_7.0.chrom.sizes
  91. share/java/classes/igv/genomes/PlasmoDB_8.2.chrom.sizes
  92. share/java/classes/igv/genomes/Plasmodium_3D7_v2.1.chrom.sizes
  93. share/java/classes/igv/genomes/Plasmodium_3D7_v5.5.chrom.sizes
  94. share/java/classes/igv/genomes/Plasmodium_6.1.chrom.sizes
  95. share/java/classes/igv/genomes/SL2.31.chrom.sizes
  96. share/java/classes/igv/genomes/SL2.40.chrom.sizes
  97. share/java/classes/igv/genomes/U00096.2.chrom.sizes
  98. share/java/classes/igv/genomes/U00096.2_alias.tab
  99. share/java/classes/igv/genomes/VcholeraeN16961.chrom.sizes
  100. share/java/classes/igv/genomes/WS201.chrom.sizes
  101. share/java/classes/igv/genomes/WS220.chrom.sizes
  102. share/java/classes/igv/genomes/WS220_alias.tab
  103. share/java/classes/igv/genomes/WS245.chrom.sizes
  104. share/java/classes/igv/genomes/Y55.chrom.sizes
  105. share/java/classes/igv/genomes/ZmB73_5a.chrom.sizes
  106. share/java/classes/igv/genomes/ZmB73_5a_alias.tab
  107. share/java/classes/igv/genomes/anidulans_4.1.chrom.sizes
  108. share/java/classes/igv/genomes/anidulans_4.1_alias.tab
  109. share/java/classes/igv/genomes/b37.chrom.sizes
  110. share/java/classes/igv/genomes/b37_alias.tab
  111. share/java/classes/igv/genomes/bosTau3.chrom.sizes
  112. share/java/classes/igv/genomes/bosTau3_alias.tab
  113. share/java/classes/igv/genomes/bosTau4.chrom.sizes
  114. share/java/classes/igv/genomes/bosTau4_alias.tab
  115. share/java/classes/igv/genomes/bosTau6.chrom.sizes
  116. share/java/classes/igv/genomes/bosTau6_alias.tab
  117. share/java/classes/igv/genomes/bosTau7.chrom.sizes
  118. share/java/classes/igv/genomes/bosTau7_alias.tab
  119. share/java/classes/igv/genomes/bosTau8.chrom.sizes
  120. share/java/classes/igv/genomes/ca21.chrom.sizes
  121. share/java/classes/igv/genomes/canFam2.chrom.sizes
  122. share/java/classes/igv/genomes/canFam3.chrom.sizes
  123. share/java/classes/igv/genomes/canFam4.chrom.sizes
  124. share/java/classes/igv/genomes/candida.chrom.sizes
  125. share/java/classes/igv/genomes/cavPor3.chrom.sizes
  126. share/java/classes/igv/genomes/ce10.chrom.sizes
  127. share/java/classes/igv/genomes/ce11.chrom.sizes
  128. share/java/classes/igv/genomes/ce4.chrom.sizes
  129. share/java/classes/igv/genomes/ce6.chrom.sizes
  130. share/java/classes/igv/genomes/danRer10.chrom.sizes
  131. share/java/classes/igv/genomes/danRer11.chrom.sizes
  132. share/java/classes/igv/genomes/danRer6.chrom.sizes
  133. share/java/classes/igv/genomes/danRer7.chrom.sizes
  134. share/java/classes/igv/genomes/dm2.chrom.sizes
  135. share/java/classes/igv/genomes/dm3.chrom.sizes
  136. share/java/classes/igv/genomes/dm6.chrom.sizes
  137. share/java/classes/igv/genomes/dmel_5.9.chrom.sizes
  138. share/java/classes/igv/genomes/dmel_r5.22.chrom.sizes
  139. share/java/classes/igv/genomes/dmel_r5.33.chrom.sizes
  140. share/java/classes/igv/genomes/equCab2.chrom.sizes
  141. share/java/classes/igv/genomes/felCat5.chrom.sizes
  142. share/java/classes/igv/genomes/galGal3.chrom.sizes
  143. share/java/classes/igv/genomes/galGal4.chrom.sizes
  144. share/java/classes/igv/genomes/galGal5.chrom.sizes
  145. share/java/classes/igv/genomes/gasAcu1.chrom.sizes
  146. share/java/classes/igv/genomes/gmax10.chrom.sizes
  147. share/java/classes/igv/genomes/gmax8.chrom.sizes
  148. share/java/classes/igv/genomes/hg16.chrom.sizes
  149. share/java/classes/igv/genomes/hg17.chrom.sizes
  150. share/java/classes/igv/genomes/hg18.chrom.sizes
  151. share/java/classes/igv/genomes/hg19.chrom.sizes
  152. share/java/classes/igv/genomes/hg19_alias.tab
  153. share/java/classes/igv/genomes/hg38.chrom.sizes
  154. share/java/classes/igv/genomes/laevis_7.1.chrom.sizes
  155. share/java/classes/igv/genomes/lmjr.chrom.sizes
  156. share/java/classes/igv/genomes/lmjr_4.0.chrom.sizes
  157. share/java/classes/igv/genomes/lmjr_4.0_alias.tab
  158. share/java/classes/igv/genomes/me49.chrom.sizes
  159. share/java/classes/igv/genomes/mg8.chrom.sizes
  160. share/java/classes/igv/genomes/mm10.chrom.sizes
  161. share/java/classes/igv/genomes/mm7.chrom.sizes
  162. share/java/classes/igv/genomes/mm8.chrom.sizes
  163. share/java/classes/igv/genomes/mm9.chrom.sizes
  164. share/java/classes/igv/genomes/monDom5.chrom.sizes
  165. share/java/classes/igv/genomes/nc10.chrom.sizes
  166. share/java/classes/igv/genomes/nc10_alias.tab
  167. share/java/classes/igv/genomes/ncrassa_v3.chrom.sizes
  168. share/java/classes/igv/genomes/osativa_6.1.chrom.sizes
  169. share/java/classes/igv/genomes/osativa_6.1_alias.tab
  170. share/java/classes/igv/genomes/osativa_7.chrom.sizes
  171. share/java/classes/igv/genomes/oviAri3.chrom.sizes
  172. share/java/classes/igv/genomes/panTro2.chrom.sizes
  173. share/java/classes/igv/genomes/panTro3.chrom.sizes
  174. share/java/classes/igv/genomes/panTro4.chrom.sizes
  175. share/java/classes/igv/genomes/ppatens_1.2.chrom.sizes
  176. share/java/classes/igv/genomes/pvivax.chrom.sizes
  177. share/java/classes/igv/genomes/pvivax_alias.tab
  178. share/java/classes/igv/genomes/rheMac2.chrom.sizes
  179. share/java/classes/igv/genomes/rheMac3.chrom.sizes
  180. share/java/classes/igv/genomes/rheMac8.chrom.sizes
  181. share/java/classes/igv/genomes/rn4.chrom.sizes
  182. share/java/classes/igv/genomes/rn5.chrom.sizes
  183. share/java/classes/igv/genomes/rn6.chrom.sizes
  184. share/java/classes/igv/genomes/sacCer1.chrom.sizes
  185. share/java/classes/igv/genomes/sacCer2.chrom.sizes
  186. share/java/classes/igv/genomes/sacCer2_alias.tab
  187. share/java/classes/igv/genomes/sacCer3.chrom.sizes
  188. share/java/classes/igv/genomes/sacCer3_alias.tab
  189. share/java/classes/igv/genomes/sacCer62.chrom.sizes
  190. share/java/classes/igv/genomes/sacCer62_alias.tab
  191. share/java/classes/igv/genomes/sclerotiorum.chrom.sizes
  192. share/java/classes/igv/genomes/sk1.chrom.sizes
  193. share/java/classes/igv/genomes/spombe_1.55.chrom.sizes
  194. share/java/classes/igv/genomes/spombe_709.chrom.sizes
  195. share/java/classes/igv/genomes/spur_2.1.chrom.sizes
  196. share/java/classes/igv/genomes/spur_2.5.chrom.sizes
  197. share/java/classes/igv/genomes/spur_3.0.chrom.sizes
  198. share/java/classes/igv/genomes/susScr3.chrom.sizes
  199. share/java/classes/igv/genomes/susScrofa.chrom.sizes
  200. share/java/classes/igv/genomes/taeGut1.chrom.sizes
  201. share/java/classes/igv/genomes/tair10.chrom.sizes
  202. share/java/classes/igv/genomes/tair10_alias.tab
  203. share/java/classes/igv/genomes/tair8.chrom.sizes
  204. share/java/classes/igv/genomes/tair9.chrom.sizes
  205. share/java/classes/igv/genomes/tb427_4.2.chrom.sizes
  206. share/java/classes/igv/genomes/tb927.chrom.sizes
  207. share/java/classes/igv/genomes/tbgambi.chrom.sizes
  208. share/java/classes/igv/genomes/tbgambi_4.0.chrom.sizes
  209. share/java/classes/igv/genomes/tbgambi_4.0_alias.tab
  210. share/java/classes/igv/genomes/tbrucei927_4.0.chrom.sizes
  211. share/java/classes/igv/genomes/tbrucei927_4.0_alias.tab
  212. share/java/classes/igv/genomes/tbrucei927_5.0.chrom.sizes
  213. share/java/classes/igv/genomes/tcas_2.0.chrom.sizes
  214. share/java/classes/igv/genomes/tcas_3.0.chrom.sizes
  215. share/java/classes/igv/genomes/vvinifera.chrom.sizes
  216. share/java/classes/igv/genomes/ws241.chrom.sizes
  217. share/java/classes/igv/genomes/xenTro2.chrom.sizes
  218. share/java/classes/igv/genomes/xenTro9.chrom.sizes
  219. share/java/classes/igv/genomes/zebrafish.chrom.sizes
  220. share/java/classes/igv/goby-io-3.3.1.jar
  221. share/java/classes/igv/gson-2.8.5.jar
  222. share/java/classes/igv/guava-27.0.1-jre.jar
  223. share/java/classes/igv/htsjdk-2.23.0.jar
  224. share/java/classes/igv/http-client-spi-2.15.67.jar
  225. share/java/classes/igv/httpclient-4.5.13.jar
  226. share/java/classes/igv/httpcore-4.4.13.jar
  227. share/java/classes/igv/icb-utils-2.0.2.jar
  228. share/java/classes/igv/igv.jar
  229. share/java/classes/igv/j2objc-annotations-1.1.jar
  230. share/java/classes/igv/jackson-annotations-2.10.5.jar
  231. share/java/classes/igv/jackson-core-2.10.5.jar
  232. share/java/classes/igv/jackson-databind-2.10.5.1.jar
  233. share/java/classes/igv/jide-common-3.7.3.jar
  234. share/java/classes/igv/jsap-3.0.0.jar
  235. share/java/classes/igv/log4j-1.2-api-2.11.0.jar
  236. share/java/classes/igv/log4j-api-2.11.0.jar
  237. share/java/classes/igv/log4j-core-2.11.0.jar
  238. share/java/classes/igv/metrics-spi-2.15.67.jar
  239. share/java/classes/igv/netty-buffer-4.1.53.Final.jar
  240. share/java/classes/igv/netty-codec-4.1.53.Final.jar
  241. share/java/classes/igv/netty-codec-http-4.1.53.Final.jar
  242. share/java/classes/igv/netty-common-4.1.53.Final.jar
  243. share/java/classes/igv/netty-handler-4.1.53.Final.jar
  244. share/java/classes/igv/netty-nio-client-2.15.67.jar
  245. share/java/classes/igv/netty-reactive-streams-2.0.4.jar
  246. share/java/classes/igv/netty-reactive-streams-http-2.0.4.jar
  247. share/java/classes/igv/netty-resolver-4.1.53.Final.jar
  248. share/java/classes/igv/netty-transport-4.1.53.Final.jar
  249. share/java/classes/igv/netty-transport-native-epoll-4.1.53.Final-linux-x86_64.jar
  250. share/java/classes/igv/netty-transport-native-unix-common-4.1.53.Final.jar
  251. share/java/classes/igv/ngs-java-2.9.0.jar
  252. share/java/classes/igv/profiles-2.15.67.jar
  253. share/java/classes/igv/protobuf-java-3.7.0-rc1.jar
  254. share/java/classes/igv/protocol-core-2.15.67.jar
  255. share/java/classes/igv/reactive-streams-1.0.3.jar
  256. share/java/classes/igv/regions-2.15.67.jar
  257. share/java/classes/igv/s3-2.15.67.jar
  258. share/java/classes/igv/sdk-core-2.15.67.jar
  259. share/java/classes/igv/slf4j-api-1.7.28.jar
  260. share/java/classes/igv/slf4j-simple-1.7.26.jar
  261. share/java/classes/igv/snappy-java-1.1.7.3.jar
  262. share/java/classes/igv/sts-2.15.67.jar
  263. share/java/classes/igv/swing-layout-1.0.3.jar
  264. share/java/classes/igv/utils-2.15.67.jar
  265. share/java/classes/igv/xmlgraphics-commons-2.3.jar
  266. share/pixmaps/igv.png
  267. @owner
  268. @group
  269. @mode
Collapse this list.
Dependency lines:
  • igv>0:biology/igv
To install the port:
cd /usr/ports/biology/igv/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/igv
  • pkg install igv
PKGNAME: igv
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
igv
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-2.9.4
FreeBSD:12:amd642.9.42.9.4
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-2.9.4
FreeBSD:13:amd642.9.42.9.4
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64-2.9.4
FreeBSD:14:aarch642.9.4-
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc642.9.4-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. openjfx14>0 : java/openjfx14
  2. gradle : devel/gradle6
  3. java : java/openjdk11
Runtime dependencies:
  1. openjfx14>0 : java/openjfx14
  2. java : java/openjdk11
Library dependencies:
  1. libintl.so : devel/gettext-runtime
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/igvteam/igv/tar.gz/v2.9.4?dummy=/
Collapse this list.

Number of commits found: 18

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
30 Sep 2021 21:23:30
 files touched by this commit commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7  2.9.4
Rene Ladan (rene) search for other commits by this committer
cleanup: drop support for EOL FreeBSD 11.X

Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11

Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*

Reviewed by:	doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
21 Aug 2021 19:08:05
 files touched by this commit commit hash:70ea3d275664fd115f4480850009f75adc1dbf16  2.9.4
Yuri Victorovich (yuri) search for other commits by this committer
biology/igv: Broken on 11

Reported by:	fallout
27 Jun 2021 09:33:51
 files touched by this commit commit hash:68a87e3c5a88c63e0c9db5e83d564ac8f5801df8  2.9.4
Guangyuan Yang (ygy) search for other commits by this committer
biology/igv: Fix build

When switching the build dependency from devel/gradle to devel/gradle6,
the build is accidentally broken. This attempts to revert part of the
change and fix build.

Fixes:		55044a2200a4c42b6b653349f0a65dfca3f96f36
Approved by:	lwhsu (mentor, implicit), portmgr (fix build)
27 Jun 2021 01:51:07
 files touched by this commit commit hash:55044a2200a4c42b6b653349f0a65dfca3f96f36  2.9.4
Guangyuan Yang (ygy) search for other commits by this committer
devel/gradle6: New port

devel/gradle needs to be updated to 7.x, while some ports build failed
under the newer version, including:

- biology/jalview
- biology/igv

Updated them to use this devel/gradle6 until they officially support 7.x.
No functional changes for these ports.

Approved by:	lwhsu (mentor)
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  2.9.4
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  2.9.4
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
28 Mar 2021 16:41:33
Original commit files touched by this commit Revision:569400  2.9.4
yuri search for other commits by this committer
biology/igv: Update 2.8.13 -> 2.9.4
30 Nov 2020 17:29:49
Original commit files touched by this commit Revision:556663  2.8.13
yuri search for other commits by this committer
biology/igv: Fix fetch by fixing a small left-over mistake

PR:		250980
Reported by:	jwb
30 Nov 2020 01:06:38
Original commit files touched by this commit Revision:556609  2.8.13
yuri search for other commits by this committer
biology/igv: 2.5.3 -> 2.8.13

PR:		250980
19 Mar 2020 09:33:13
Original commit files touched by this commit Revision:528706  2.5.3
tobik search for other commits by this committer
Deprecate java/openjfx8-devel consumers

Chase r527795 and put a deprecation notice on all openjfx8-devel
dependent ports too.

Also deprecate devel/gradle4 which is only needed to build igv and
openjfx8-devel.
01 Jun 2019 20:49:20
Original commit files touched by this commit Revision:503255  2.5.3
yuri search for other commits by this committer
biology/igv: Update 2.5.2 -> 2.5.3

Reported by:	portscout
11 May 2019 05:59:29
Original commit files touched by this commit Revision:501223  2.5.2
yuri search for other commits by this committer
biology/igv: Update 2.5.0 -> 2.5.2

Reported by:	portscout
04 Apr 2019 04:49:41
Original commit files touched by this commit Revision:497786  2.5.0
yuri search for other commits by this committer
biology/igv: Update 2.4.19 -> 2.5.0

Reported by:	portscout
23 Feb 2019 21:23:51
Original commit files touched by this commit Revision:493730  2.4.19
yuri search for other commits by this committer
biology/igv: Update 2.4.16 -> 2.4.19

Reported by:	portscout
04 Dec 2018 17:53:46
Original commit files touched by this commit Revision:486619  2.4.16
yuri search for other commits by this committer
devel/gradle: Update to 5.0

Change biology/igv and biology/gatk to gradle4 due to build failures with
gradle5.

PR:		233623
Approved by:	gasol.wu@gmail.com (maintainer)
18 Nov 2018 20:02:41
Original commit files touched by this commit Revision:485255  2.4.16
yuri search for other commits by this committer
biology/igv: Update 2.4.15 -> 2.4.16

Reported by:	portscout
04 Nov 2018 22:55:24
Original commit files touched by this commit Revision:484156  2.4.15
yuri search for other commits by this committer
biology/igv: Update 2.4.10 -> 2.4.15

Port changes:
* Change to gradle, corresponding updates in build, install, environment, etc.

Reported by:	portscout
25 Jun 2018 23:56:01
Original commit files touched by this commit Revision:473356  2.4.10
yuri search for other commits by this committer
New port: biology/igv: Visualization tool for genomic datasets

Number of commits found: 18