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Port details
igv Visualization tool for genomic datasets
2.5.3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.5.3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-06-25 23:56:14
Last Update: 2019-06-01 21:49:20
SVN Revision: 503255
Also Listed In: java
License: MIT
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (9 items)
  1. bin/igv
  2. /usr/local/share/java/classes/batik-codec-1.10.jar
  3. /usr/local/share/java/classes/goby-io-igv-1.1.jar
  4. /usr/local/share/java/classes/log4j-core-2.11.0.jar
  5. /usr/local/share/java/classes/igv.jar
  6. share/pixmaps/igv.png
  7. /usr/local/share/licenses/igv-2.5.3/catalog.mk
  8. /usr/local/share/licenses/igv-2.5.3/LICENSE
  9. /usr/local/share/licenses/igv-2.5.3/MIT
Collapse this list.
Dependency lines:
  • igv>0:biology/igv
To install the port: cd /usr/ports/biology/igv/ && make install clean
To add the package: pkg install igv
PKGNAME: igv
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. openjfx8-devel>0 : java/openjfx8-devel
  2. gradle4 : devel/gradle4
  3. java : java/openjdk8
Runtime dependencies:
  1. openjfx8-devel>0 : java/openjfx8-devel
  2. java : java/openjdk8
Library dependencies:
  1. libintl.so : devel/gettext-runtime
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://codeload.github.com/igvteam/igv/tar.gz/v2.5.3?dummy=/

Number of commits found: 8

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
01 Jun 2019 20:49:20
Original commit files touched by this commit  2.5.3
Revision:503255
yuri search for other commits by this committer
biology/igv: Update 2.5.2 -> 2.5.3

Reported by:	portscout
11 May 2019 05:59:29
Original commit files touched by this commit  2.5.2
Revision:501223
yuri search for other commits by this committer
biology/igv: Update 2.5.0 -> 2.5.2

Reported by:	portscout
04 Apr 2019 04:49:41
Original commit files touched by this commit  2.5.0
Revision:497786
yuri search for other commits by this committer
biology/igv: Update 2.4.19 -> 2.5.0

Reported by:	portscout
23 Feb 2019 21:23:51
Original commit files touched by this commit  2.4.19
Revision:493730
yuri search for other commits by this committer
biology/igv: Update 2.4.16 -> 2.4.19

Reported by:	portscout
04 Dec 2018 17:53:46
Original commit files touched by this commit  2.4.16
Revision:486619
yuri search for other commits by this committer
devel/gradle: Update to 5.0

Change biology/igv and biology/gatk to gradle4 due to build failures with
gradle5.

PR:		233623
Approved by:	gasol.wu@gmail.com (maintainer)
18 Nov 2018 20:02:41
Original commit files touched by this commit  2.4.16
Revision:485255
yuri search for other commits by this committer
biology/igv: Update 2.4.15 -> 2.4.16

Reported by:	portscout
04 Nov 2018 22:55:24
Original commit files touched by this commit  2.4.15
Revision:484156
yuri search for other commits by this committer
biology/igv: Update 2.4.10 -> 2.4.15

Port changes:
* Change to gradle, corresponding updates in build, install, environment, etc.

Reported by:	portscout
25 Jun 2018 23:56:01
Original commit files touched by this commit  2.4.10
Revision:473356
yuri search for other commits by this committer
New port: biology/igv: Visualization tool for genomic datasets

Number of commits found: 8

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