notbugIf you buy from Amazon USA, please support us by using this link.
Port details
igv Visualization tool for genomic datasets
2.4.16 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-06-25 23:56:14
Last Update: 2018-12-04 17:53:46
SVN Revision: 486619
Also Listed In: java
License: MIT
The Integrative Genomics Viewer (IGV) is a high-performance visualization tool
for interactive exploration of large, integrated genomic datasets. It supports
a wide variety of data types, including array-based and next-generation sequence
data, and genomic annotations.

WWW: https://software.broadinstitute.org/software/igv/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (9 items)
  1. bin/igv
  2. /usr/local/share/java/classes/batik-codec-1.10.jar
  3. /usr/local/share/java/classes/goby-io-igv-1.1.jar
  4. /usr/local/share/java/classes/log4j-core-2.11.0.jar
  5. /usr/local/share/java/classes/igv.jar
  6. share/pixmaps/igv.png
  7. /usr/local/share/licenses/igv-2.4.16/catalog.mk
  8. /usr/local/share/licenses/igv-2.4.16/LICENSE
  9. /usr/local/share/licenses/igv-2.4.16/MIT
  10. Collapse this list.

Dependency line: igv>0:biology/igv


To install the port: cd /usr/ports/biology/igv/ && make install clean
To add the package: pkg install igv

PKGNAME: igv

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1542564950
SHA256 (igv-2.4.16/tools.png) = 7a619d7770da008d1bc23a60a07f416625ba3a404a3656b8d1bda0de97415d1c
SIZE (igv-2.4.16/tools.png) = 5139
SHA256 (igv-2.4.16/igvteam-igv-v2.4.16_GH0.tar.gz) = 3c8187d2a7e7991d1892417bf3880b050643a35c73af8e8b649de93feb05402b
SIZE (igv-2.4.16/igvteam-igv-v2.4.16_GH0.tar.gz) = 141291418


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. openjfx8-devel>0 : java/openjfx8-devel
  2. gradle4 : devel/gradle4
  3. java : java/openjdk8
Runtime dependencies:
  1. openjfx8-devel>0 : java/openjfx8-devel
  2. java : java/openjdk8
Library dependencies:
  1. libintl.so : devel/gettext-runtime
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
gettext-runtime

Master Sites:
  1. https://codeload.github.com/igvteam/igv/tar.gz/v2.4.16?dummy=/

Number of commits found: 4

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
04 Dec 2018 17:53:46
Original commit files touched by this commit  2.4.16
Revision:486619
yuri search for other commits by this committer
devel/gradle: Update to 5.0

Change biology/igv and biology/gatk to gradle4 due to build failures with
gradle5.

PR:		233623
Approved by:	gasol.wu@gmail.com (maintainer)
18 Nov 2018 20:02:41
Original commit files touched by this commit  2.4.16
Revision:485255
yuri search for other commits by this committer
biology/igv: Update 2.4.15 -> 2.4.16

Reported by:	portscout
04 Nov 2018 22:55:24
Original commit files touched by this commit  2.4.15
Revision:484156
yuri search for other commits by this committer
biology/igv: Update 2.4.10 -> 2.4.15

Port changes:
* Change to gradle, corresponding updates in build, install, environment, etc.

Reported by:	portscout
25 Jun 2018 23:56:01
Original commit files touched by this commit  2.4.10
Revision:473356
yuri search for other commits by this committer
New port: biology/igv: Visualization tool for genomic datasets

Number of commits found: 4

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
msmtpFeb 15
firefoxFeb 13
firefox-esrFeb 13
thunderbirdFeb 13
linux-flashplayerFeb 12
openjpeg*Feb 11
openjpeg*Feb 11
kf5-kauthFeb 10
unitFeb 08
curlFeb 07
gitlab-ceFeb 06
dovecotFeb 05
typo3-8Feb 02
typo3-9Feb 02
giteaFeb 01

12 vulnerabilities affecting 85 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2019-02-15 15:06:58


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 36375
Broken 114
Deprecated 404
Ignore 328
Forbidden 3
Restricted 162
No CDROM 74
Vulnerable 36
Expired 6
Set to expire 377
Interactive 0
new 24 hours 11
new 48 hours12
new 7 days50
new fortnight103
new month337

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2019 Dan Langille. All rights reserved.