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Port details
iqtree Efficient phylogenomic software by maximum likelihood
1.6.12 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 1.6.11Version of this port present on the latest quarterly branch.
Maintainer: jrm@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-10-21 16:58:02
Last Update: 2019-08-27 02:19:11
SVN Revision: 509979
License: GPLv2
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
  1. bin/iqtree
  2. /usr/local/share/licenses/iqtree-1.6.12/catalog.mk
  3. /usr/local/share/licenses/iqtree-1.6.12/LICENSE
  4. /usr/local/share/licenses/iqtree-1.6.12/GPLv2
Collapse this list.
Dependency lines:
  • iqtree>0:biology/iqtree
To install the port: cd /usr/ports/biology/iqtree/ && make install clean
To add the package: pkg install iqtree
PKGNAME: iqtree
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
  3. eigen3.pc : math/eigen3
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://codeload.github.com/Cibiv/IQ-TREE/tar.gz/v1.6.12?dummy=/

Number of commits found: 27

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
27 Aug 2019 01:19:11
Original commit files touched by this commit  1.6.12
Revision:509979
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.12

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.12
26 Jul 2019 20:46:57
Original commit files touched by this commit  1.6.11_1
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
24 Jun 2019 21:47:35
Original commit files touched by this commit  1.6.11
Revision:505061
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.11

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.11
21 Feb 2019 14:33:43
Original commit files touched by this commit  1.6.10
Revision:493504
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.10

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.10
27 Dec 2018 18:34:44
Original commit files touched by this commit  1.6.9_1
Revision:488558
jrm search for other commits by this committer
biology/iqtree: switch to outsource cmake build
26 Dec 2018 09:06:35
Original commit files touched by this commit  1.6.9_1
Revision:488363
tcberner search for other commits by this committer
Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7
25 Dec 2018 20:25:40
Original commit files touched by this commit  1.6.9
Revision:488341
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
23 Dec 2018 13:21:12
Original commit files touched by this commit  1.6.9
Revision:488217
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.9

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.9
12 Dec 2018 01:35:36
Original commit files touched by this commit  1.6.8_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
28 Oct 2018 22:00:18
Original commit files touched by this commit  1.6.8
Revision:483358
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.8

Upstream release notes:
https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.8
16 Oct 2018 13:49:54
Original commit files touched by this commit  1.6.7.1
Revision:482228
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.7.1

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.7.1
27 Aug 2018 01:20:29
Original commit files touched by this commit  1.6.7
Revision:478170
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.7

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.7
29 Jul 2018 22:18:46
Original commit files touched by this commit  1.6.6_1
Revision:475857
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
08 Jul 2018 21:15:47
Original commit files touched by this commit  1.6.6
Revision:474201
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.6

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.6
18 Jun 2018 01:48:46
Original commit files touched by this commit  1.6.5
Revision:472665
linimon search for other commits by this committer
Mark ports broken on powerpc64, categories a-c.

While here, pet portlint and do some other cleanup.

Approved by:	portmgr (tier-2 blanket)
11 May 2018 16:57:10
Original commit files touched by this commit  1.6.5
Revision:469673
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.5

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.5
30 Apr 2018 16:37:22
Original commit files touched by this commit  1.6.4
Revision:468714
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.4

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.4
23 Mar 2018 01:22:47
Original commit files touched by this commit  1.6.3
Revision:465330
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.3

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.3
10 Mar 2018 17:46:06
Original commit files touched by this commit  1.6.2_1
Revision:464084
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
03 Mar 2018 03:15:24
Original commit files touched by this commit  1.6.2
Revision:463462
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.2

Upstream changes: http://www.iqtree.org/release/v1.6.2
02 Jan 2018 16:49:24
Original commit files touched by this commit  1.6.1_2
Revision:457914
tcberner search for other commits by this committer
New USES=eigen

  Usage:
    USES=eigen:<version>[,<type>]

    version: 2 or 3 (required)
    type:    build (default), run

  For example:
    USES=eigen:2,build,run
  will add a BUILD- and RUN_DEPENDS on math/eigen2, and
    USES=eigen:3
  will add a BUILD_DEPENDS on math/eigen3.

* Convert the existing ports to use it
  - biology/iqtree: remove run time dependency (seemed not to be needed)
  - graphics/movit: remove run time dependency (seemed not to be needed)
  - science/avogadro: add run time dependeny (installed cmake file requires it
to be present)

Reviewed by:	rakuco, mat
Differential Revision:	https://reviews.freebsd.org/D13702
29 Dec 2017 17:14:07
Original commit files touched by this commit  1.6.1_1
Revision:457516
jrm search for other commits by this committer
biology/iqtree: Fix distinfo after upstream re-released v1.6.1
28 Dec 2017 18:37:06
Original commit files touched by this commit  1.6.1
Revision:457467
jrm search for other commits by this committer
biology/iqtree: Update to version 1.6.1

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases
11 Dec 2017 07:18:48
Original commit files touched by this commit  1.6.b4_1
Revision:455927
linimon search for other commits by this committer
Mark several ports newly broken on arm.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
06 Nov 2017 14:24:39
Original commit files touched by this commit  1.6.b4_1
Revision:453620
mat search for other commits by this committer
Fix USE_GITHUB usage.

Sponsored by:	Absolight
21 Oct 2017 17:40:19
Original commit files touched by this commit  1.6.b4_1
Revision:452596
jrm search for other commits by this committer
biology/iqtree: Add EXAMPLES option and fix mess with installation of
example files in first commit
21 Oct 2017 16:57:53
Original commit files touched by this commit  1.6.b4
Revision:452595
jrm search for other commits by this committer
New port, biology/iqtree: Efficient phylogenomic software

WWW: http://www.iqtree.org/

Number of commits found: 27

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