notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Port details
lagan Efficient tools for large-scale multiple alignments of genomic DNA
2.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.0Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
search for ports maintained by this maintainer
Port Added: 2006-03-16 22:31:50
Last Update: 2019-08-13 17:00:39
SVN Revision: 508834
License: GPLv2
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (44 items)
  1. lagan/anchors
  2. lagan/chaos
  3. lagan/glocal
  4. lagan/mlagan
  5. lagan/order
  6. lagan/anal_gloc.pl
  7. lagan/lagan.pl
  8. lagan/rechaos.pl
  9. lagan/slagan.pl
  10. lagan/utils/Glue
  11. lagan/utils/bin2bl
  12. lagan/utils/bin2mf
  13. lagan/utils/cextract
  14. lagan/utils/contigorder
  15. lagan/utils/cstat
  16. lagan/utils/dotplot
  17. lagan/utils/fa2xfa
  18. lagan/utils/getbounds
  19. lagan/utils/getcontigpos
  20. lagan/utils/getlength
  21. lagan/utils/getoverlap
  22. lagan/utils/rc
  23. lagan/utils/scorealign
  24. lagan/utils/scorecontigs
  25. lagan/utils/seqmerge
  26. lagan/utils/cmerge2.pl
  27. lagan/utils/draft.pl
  28. lagan/utils/mextract.pl
  29. lagan/utils/mf2bin.pl
  30. lagan/utils/mpretty.pl
  31. lagan/utils/mproject.pl
  32. lagan/utils/mrun.pl
  33. lagan/utils/mrunfile.pl
  34. lagan/utils/mrunpairs.pl
  35. lagan/utils/mviz.pl
  36. lagan/Readmes/README.FIRST
  37. lagan/Readmes/README.chaos
  38. lagan/Readmes/README.lagan
  39. lagan/Readmes/README.mlagan
  40. lagan/Readmes/README.tools
  41. lagan/Readmes/README.shuffle
  42. /usr/local/share/licenses/lagan-2.0_1/catalog.mk
  43. /usr/local/share/licenses/lagan-2.0_1/LICENSE
  44. /usr/local/share/licenses/lagan-2.0_1/GPLv2
Collapse this list.
Dependency lines:
  • lagan>0:biology/lagan
To install the port: cd /usr/ports/biology/lagan/ && make install clean
To add the package: pkg install lagan
PKGNAME: lagan
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Runtime dependencies:
  1. perl5>=5.30.r1<5.31 : lang/perl5.30
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. http://lagan.stanford.edu/lagan_web/

Number of commits found: 14

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
13 Aug 2019 16:00:39
Original commit files touched by this commit  2.0_1
Revision:508834
mat search for other commits by this committer
Convert to UCL & cleanup pkg-message (categories a-c)
19 May 2016 11:09:14
Original commit files touched by this commit  2.0_1
Revision:415503
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-messages

Approved by:	portmgr blanket
11 May 2016 21:48:50
Original commit files touched by this commit  2.0_1
Revision:415036
bapt search for other commits by this committer
Prevent collision with getline(3)
While here regen patches
09 Jan 2016 18:26:40
Original commit files touched by this commit  2.0_1
Revision:405652
pawel search for other commits by this committer
Remove deprecated PLIST_DIRSTRY and also no longer needed PLIST_DIRS
11 Jun 2015 10:17:25
Original commit files touched by this commit  2.0_1
Revision:389186
amdmi3 search for other commits by this committer
- Fix shebangs

MFH:		2015Q2
27 Nov 2013 13:16:48
Original commit files touched by this commit  2.0
Revision:335011
jadawin search for other commits by this committer
- Fix build
- Support STAGEDIR

PR:		ports/184238
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
20 Sep 2013 15:55:44
Original commit files touched by this commit  2.0
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
03 Aug 2013 13:44:01
Original commit files touched by this commit  2.0
Revision:324191  Sanity Test Failure
mat search for other commits by this committer
- Convert to new perl framework
- Remove MAKE_JOBS_SAFE=yes, it's the default.
15 Nov 2012 07:04:29
Original commit files touched by this commit  2.0
Revision:307436
wen search for other commits by this committer
- Update to version 2.0
- Update pkg-descr

PR:		172497
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>

Feature safe:	yes
01 Oct 2012 14:45:17
Original commit files touched by this commit  1.2
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.2

miwi search for other commits by this committer
- Get Rid MD5 support
08 Nov 2010 15:05:11
Original commit files touched by this commit  1.2

pav search for other commits by this committer
- Unbreak build: CPP is now part of MAKE_ENV

Reported by:    pointyhat
25 Jul 2008 09:08:42
Original commit files touched by this commit  1.2

pav search for other commits by this committer
- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV
16 Mar 2006 22:31:26
Original commit files touched by this commit  1.2

garga search for other commits by this committer
Add lagan 1.2, efficient tools for large-scale multiple alignments of
genomic DNA.

PR:             ports/93058
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 14

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
py-pillowOct 15
mod_perl2Oct 09
xpdfOct 06
xpdf3Oct 06
xpdf4Oct 06
unboundOct 03
cactiOct 02
gitlab-ceOct 02
gitlab-ceOct 02
ruby24Oct 02
ruby25Oct 02
mongodb34Sep 30
mongodb34Sep 30
mongodb36Sep 30
mongodb36Sep 30

8 vulnerabilities affecting 24 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2019-10-15 15:43:31


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 37689
Broken 77
Deprecated 104
Ignore 343
Forbidden 3
Restricted 158
No CDROM 73
Vulnerable 27
Expired 18
Set to expire 75
Interactive 0
new 24 hours 3
new 48 hours4
new 7 days27
new fortnight60
new month231

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2019 Dan Langille. All rights reserved.